| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is nemA [H]
Identifier: 119775541
GI number: 119775541
Start: 2894172
End: 2895215
Strand: Reverse
Name: nemA [H]
Synonym: Sama_2407
Alternate gene names: 119775541
Gene position: 2895215-2894172 (Counterclockwise)
Preceding gene: 119775543
Following gene: 119775539
Centisome position: 67.23
GC content: 55.94
Gene sequence:
>1044_bases ATGACTGACATACTCTTTACTCCAGTGGCGCTGAATGAGCGCATCGAGCTGAAAAACCGCATCCTGATGGCGCCTCTGAC CCGTTGTATGGCAGACGATGCGCTGGTGCCTACCCAGGCTATGGTCGACTACTATGCCCGCCGGGCAGATGCAGGGCTGA TTATCAGTGAGGCCACCATTATTCGCCCCGATGGTCAGGGTTATCCCAACACCCCGGGTATTTTCACCCAGGCGCAAATT GCCGGATGGCGTAAGGTCACCGATGCCGTACATGAAAATGGCGGCAAAATTTTTGCCCAACTGTGGCACACAGGCCGGGT GGCACATCCTCACTTTTGGGGTGGCACAGAAGTGATTGCGCCGTCGGCGGTGGGGGTAGAGGGTACAGTGCCCAGAATGC GTGAGCTCACCTATTTGGTTCCCCGTGAAGCCACAGCGCTGGAAATTGCCCAGTTGGTGGAGGACTATGCCAAGGCGGCT GAAAATGCCATCGAAGCCGGGTTCGACGGCGTCGAAATCCACGGTGCCAACGGTTATATGATTGACGAATTCCTGCATTA CGACAGCAATCGCCGCGAAGATGAGTTTGGTGGCAGCCCCGAAAACATGGTGTGCTTCCCGCTGCAGGTTGTGGATGCCG TTACTTCACGCATCGGTGCTGCGCGCACGGCACTGCGTATTTCACCGGCGGCTTACTTCAATATCGAGCCGGATCCCCGC GACCGGGCGGTGTTTGATCTTTTGCTGTCTGAATTGGATACCCGTGAACTTGCCTATTTGCACGGCGGTATATTCGACGA CAGCGTTCATTATGACTACCTCGACGGCCGGGTCAGTGAGTACCTGCGTCGCCACAGCCGTCATACCCTGGTGGGAGTGG GTAGCTACGATGCCGAAACAGCCGCTGCTGCCATTGCCACCAATAAGTTCGACGTGATTGCGATTGGCAGACCTTTTATT GCCAATCACGATTATGTTGCACGGGTACGTGAAGGCGCAGAGCTCAAGCCCTACAGTGATGAGCTGCTGCCAGTGCTTTA CTGA
Upstream 100 bases:
>100_bases AGGGTAACAGACTTTTTTGAATGTATGTTCAAAAAAGTTCTTGAATGTATGTTCAAGAATGATTATTTTGAATGCCTGTT CAAAATAGGAACCCCCATTC
Downstream 100 bases:
>100_bases TCCGCTTGGTGATACCAATAAAAAAGCCCCGCAGCAGCGGGGCTTTTTTCTGTCAGGGGCGCATCAATCGTTGTCGAGTT TATGTTTGCCCAGCACAGTG
Product: Oye family NADH-dependent flavin oxidoreductase
Products: NADP; Cytotoxic compound [C]
Alternate protein names: N-ethylmaleimide reducing enzyme [H]
Number of amino acids: Translated: 347; Mature: 346
Protein sequence:
>347_residues MTDILFTPVALNERIELKNRILMAPLTRCMADDALVPTQAMVDYYARRADAGLIISEATIIRPDGQGYPNTPGIFTQAQI AGWRKVTDAVHENGGKIFAQLWHTGRVAHPHFWGGTEVIAPSAVGVEGTVPRMRELTYLVPREATALEIAQLVEDYAKAA ENAIEAGFDGVEIHGANGYMIDEFLHYDSNRREDEFGGSPENMVCFPLQVVDAVTSRIGAARTALRISPAAYFNIEPDPR DRAVFDLLLSELDTRELAYLHGGIFDDSVHYDYLDGRVSEYLRRHSRHTLVGVGSYDAETAAAAIATNKFDVIAIGRPFI ANHDYVARVREGAELKPYSDELLPVLY
Sequences:
>Translated_347_residues MTDILFTPVALNERIELKNRILMAPLTRCMADDALVPTQAMVDYYARRADAGLIISEATIIRPDGQGYPNTPGIFTQAQI AGWRKVTDAVHENGGKIFAQLWHTGRVAHPHFWGGTEVIAPSAVGVEGTVPRMRELTYLVPREATALEIAQLVEDYAKAA ENAIEAGFDGVEIHGANGYMIDEFLHYDSNRREDEFGGSPENMVCFPLQVVDAVTSRIGAARTALRISPAAYFNIEPDPR DRAVFDLLLSELDTRELAYLHGGIFDDSVHYDYLDGRVSEYLRRHSRHTLVGVGSYDAETAAAAIATNKFDVIAIGRPFI ANHDYVARVREGAELKPYSDELLPVLY >Mature_346_residues TDILFTPVALNERIELKNRILMAPLTRCMADDALVPTQAMVDYYARRADAGLIISEATIIRPDGQGYPNTPGIFTQAQIA GWRKVTDAVHENGGKIFAQLWHTGRVAHPHFWGGTEVIAPSAVGVEGTVPRMRELTYLVPREATALEIAQLVEDYAKAAE NAIEAGFDGVEIHGANGYMIDEFLHYDSNRREDEFGGSPENMVCFPLQVVDAVTSRIGAARTALRISPAAYFNIEPDPRD RAVFDLLLSELDTRELAYLHGGIFDDSVHYDYLDGRVSEYLRRHSRHTLVGVGSYDAETAAAAIATNKFDVIAIGRPFIA NHDYVARVREGAELKPYSDELLPVLY
Specific function: Catalyzes the reduction of N-ethylmaleimide (NEM) to N- ethylsuccinimide [H]
COG id: COG1902
COG function: function code C; NADH:flavin oxidoreductases, Old Yellow Enzyme family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NADH:flavin oxidoreductase/NADH oxidase family [H]
Homologues:
Organism=Escherichia coli, GI1787939, Length=350, Percent_Identity=40, Blast_Score=226, Evalue=1e-60, Organism=Escherichia coli, GI1789463, Length=220, Percent_Identity=36.8181818181818, Blast_Score=120, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17559804, Length=376, Percent_Identity=25, Blast_Score=92, Evalue=5e-19, Organism=Caenorhabditis elegans, GI72001454, Length=358, Percent_Identity=25.6983240223464, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17564188, Length=377, Percent_Identity=23.8726790450928, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17565138, Length=342, Percent_Identity=26.6081871345029, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17559802, Length=349, Percent_Identity=23.4957020057307, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17540738, Length=220, Percent_Identity=25.9090909090909, Blast_Score=70, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6321973, Length=358, Percent_Identity=33.5195530726257, Blast_Score=159, Evalue=6e-40, Organism=Saccharomyces cerevisiae, GI6325086, Length=357, Percent_Identity=33.0532212885154, Blast_Score=159, Evalue=8e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001155 [H]
Pfam domain/function: PF00724 Oxidored_FMN [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 38424; Mature: 38293
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDILFTPVALNERIELKNRILMAPLTRCMADDALVPTQAMVDYYARRADAGLIISEATI CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECEEE IRPDGQGYPNTPGIFTQAQIAGWRKVTDAVHENGGKIFAQLWHTGRVAHPHFWGGTEVIA ECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCCCCCCCCCCCCEEC PSAVGVEGTVPRMRELTYLVPREATALEIAQLVEDYAKAAENAIEAGFDGVEIHGANGYM CCCCCCCCCCHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC IDEFLHYDSNRREDEFGGSPENMVCFPLQVVDAVTSRIGAARTALRISPAAYFNIEPDPR HHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHEEECCEEEEECCCCCC DRAVFDLLLSELDTRELAYLHGGIFDDSVHYDYLDGRVSEYLRRHSRHTLVGVGSYDAET HHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHCHHHHHHHHHCCCCEEEEECCCCCHH AAAAIATNKFDVIAIGRPFIANHDYVARVREGAELKPYSDELLPVLY HHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEECC >Mature Secondary Structure TDILFTPVALNERIELKNRILMAPLTRCMADDALVPTQAMVDYYARRADAGLIISEATI CCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECEEE IRPDGQGYPNTPGIFTQAQIAGWRKVTDAVHENGGKIFAQLWHTGRVAHPHFWGGTEVIA ECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCCCCCCCCCCCCEEC PSAVGVEGTVPRMRELTYLVPREATALEIAQLVEDYAKAAENAIEAGFDGVEIHGANGYM CCCCCCCCCCHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC IDEFLHYDSNRREDEFGGSPENMVCFPLQVVDAVTSRIGAARTALRISPAAYFNIEPDPR HHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHEEECCEEEEECCCCCC DRAVFDLLLSELDTRELAYLHGGIFDDSVHYDYLDGRVSEYLRRHSRHTLVGVGSYDAET HHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHCHHHHHHHHHCCCCEEEEECCCCCHH AAAAIATNKFDVIAIGRPFIANHDYVARVREGAELKPYSDELLPVLY HHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: FMN. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NADPH; N-ethylmaleimide [C]
Specific reaction: NADPH + N-ethylmaleimide = NADP + Cytotoxic compound [C]
General reaction: Reduction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9013822; 9278503 [H]