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The map label for this gene is yciR [C]

Identifier: 119775539

GI number: 119775539

Start: 2889190

End: 2891445

Strand: Reverse

Name: yciR [C]

Synonym: Sama_2405

Alternate gene names: 119775539

Gene position: 2891445-2889190 (Counterclockwise)

Preceding gene: 119775541

Following gene: 119775538

Centisome position: 67.15

GC content: 54.21

Gene sequence:

>2256_bases
ATGCTTGAATGGTTTGTTGATCACACCCGATTGGGGGCTGGGCTTTGGACCAGCCGAGATGAATGCCTTTGGCAACAGAA
CGCCGATGGCGACCCCATGACCACTTTGACAGTCAGCGGTATCGGGGGCGAGCTGAAGCTCTGTTTACATGGAGATGTAC
TCACTGACGGCCATCAACTGCTGGCAAAAGCATTGCTGGAAGGTGTGGCTGCCGCACTTGGCGGCGGAGAGTCCGGTCTG
CTGCAAAGCTTTATGGATGCCTTTGACGAACACATCTGGATAAAGGATGCTGAGGGGCGTTACCGATTTATTAACCAGAG
TACCTTGGTGTCGTGGGATTTAAGCCCGGCGCAGATATTGTCACGTAAAGATGCTGAGGTCTTTCCCGATCGTGTTTCCG
AGTACACAGACACAGATCTCAAGGCGGTCAAAGAAGGCCATCCCATTGTCGTCGCCGAATGTATTGACCGTTCGTTGGAT
AAGGGCAATATCTGGCTCGAAACCATCAAAGCGCCCATGTACGACATGGATGGCAGGCTACTAGGGGTGATAGGTACGAC
CCGGGACATTGCCAGGTACAAAGCTGCCGAAGAGCAATTGTTTCTGACCTCCAAGGTGTTTGAAAATGCCATTGAGGGGG
TGATGATCACCGATTCCAATGGGATTATCACCGAGATAAATGGCGCCTTTGAAACCATCACGGGTTACAGCCGTGATGAA
GTGATTGGCAAAACTCCCAAACTGCTTAATTCTGGACGCCATGAGCGGGACTTTTTTGAAAATCTCTGGCGGGCATTGAA
AACCCAGGGGCACTGGCACGGTGAGATTTGGAATCGCCGCAAAAATGGCACCCTGTTTGCCGAGCAAACCAGCATCAGCG
CCGTGTACGGTGAAGATGGGCAAGTCCGCTGCTTTGTGGCGGTGTTTTCCGATATCTCCCTGCTTAAACAAACCGAGGCC
GAAGTTGCTCAGCTTGCCTGGCACGACCCGCTCACCCGCTTGCCCAATCGCTCCAAACTCACCACCATCAGCCAGCAGCA
AATCAAGCTCGCCGCCAACCGAAAAACCCGATTGGCGCTGCTGCTTATCGACGTGGACCTCTTCAAACACATTAATGACA
GTTTTGGGCACCTCGCAGGCGACAAAGTGTTGCTGTCGTTATCCGAGCGTCTCGCCGCACTGCTTGGCGCCGAAGATACT
CTGGCCCGAATTGGAGGCGATGAGTTTGTATTGCTGACACAGGTGAGACGCCGGGACGACATTCCTGTGATCCTGTCTGC
CATTCAAAGAGCGTTTGATACCAGCTTCGATACCAGTGAGGGCGAGTCGGTTCGCCTCAGTGCCAGTATCGGTATTGCTG
TGTATCCCGACGATGGCGATAACCCGGACACCTTGCTGAAAAACGCCGATGCCGCCATGTATCGGGCCAAGCAGCAAGGC
CGTAATCGCCATGCGTTTTATACAGAGCAAATGACGCAAAGTTCCATGCAGCAATTGCGGCTGCAAACTGCCCTCAGAGG
CGCGGTGAAAAACAGCGCACTATCGTTGGTTTACCAACCCAAAATCAATTTGCGTACCCGTAAACTCATTGGCGTAGAGG
CCCTGTGTCGGTGGACAGATCATGAGCTCGGGGTTGTGTCTCCGGCAGAATTTATTCCGGTTGCCGAGTCCATTGGCTTG
ATGCCGGAGATAGGCCTGTGGGTATTGAAAGAGGCCTGTCGCCAGGCGCGAATTTGGCGTGACCAGGGGCTTAACCCCGG
TCGCATGGCGGTAAATGTGTCGGGTTCTCAGCTTACCGGCGATAACTTTGCCGACAGTGTCGCCAGAGTGCTCACACAAA
CAGGGCTCTCCCCGGACGCCCTTGAGCTGGAAATCACCGAGTCCGTTGTGCTGGATAATCCCGCCAGTGCCATCGACACC
ATGGACAAACTTCGTGGTATGGGGGTCAGTCTGGCGCTGGATGATTTCGGCACCGGGTATTCCTCGCTGAGTTATTTGCG
CAAGCTGCCCCTTAACAAGCTCAAAATAGATCAGTCATTCGTCAGGGAACTCCCCACCGATCAGGACAGCGGCGCCATCG
CCATGGCCATTATCGCCATGGGAGAGGCGCTGAAACTGGGCGTAATCGCCGAAGGGGTTGAAAACGAAACGCAGGCTGAG
TTTTTGCTGCGTTTGGGCTGCACCGAGGCCCAGGGGTATCTGTTTGCCAGGCCATTATTGGCATCAGAGCTGAAGCAGCT
GCTGCAAGGCGGGTGA

Upstream 100 bases:

>100_bases
CTTGCAGCTACACTAATTAGGTAGCTATTTGGAAGTGGAGCGGGTATTGAACAGTCGGGCACATGGCAATCATCAGACAG
CCATAAAAAGCGTATCTCCC

Downstream 100 bases:

>100_bases
TCCTGCGATTAAGCCTTGCTACTATAGCGCCCTTTAGTTTGTGCTCCGGAGTTTCCCGTGTCTTTTGCTGCTTTTACTCT
GCCGTCTCCCTTGGCTAACA

Product: sensory box protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 751; Mature: 751

Protein sequence:

>751_residues
MLEWFVDHTRLGAGLWTSRDECLWQQNADGDPMTTLTVSGIGGELKLCLHGDVLTDGHQLLAKALLEGVAAALGGGESGL
LQSFMDAFDEHIWIKDAEGRYRFINQSTLVSWDLSPAQILSRKDAEVFPDRVSEYTDTDLKAVKEGHPIVVAECIDRSLD
KGNIWLETIKAPMYDMDGRLLGVIGTTRDIARYKAAEEQLFLTSKVFENAIEGVMITDSNGIITEINGAFETITGYSRDE
VIGKTPKLLNSGRHERDFFENLWRALKTQGHWHGEIWNRRKNGTLFAEQTSISAVYGEDGQVRCFVAVFSDISLLKQTEA
EVAQLAWHDPLTRLPNRSKLTTISQQQIKLAANRKTRLALLLIDVDLFKHINDSFGHLAGDKVLLSLSERLAALLGAEDT
LARIGGDEFVLLTQVRRRDDIPVILSAIQRAFDTSFDTSEGESVRLSASIGIAVYPDDGDNPDTLLKNADAAMYRAKQQG
RNRHAFYTEQMTQSSMQQLRLQTALRGAVKNSALSLVYQPKINLRTRKLIGVEALCRWTDHELGVVSPAEFIPVAESIGL
MPEIGLWVLKEACRQARIWRDQGLNPGRMAVNVSGSQLTGDNFADSVARVLTQTGLSPDALELEITESVVLDNPASAIDT
MDKLRGMGVSLALDDFGTGYSSLSYLRKLPLNKLKIDQSFVRELPTDQDSGAIAMAIIAMGEALKLGVIAEGVENETQAE
FLLRLGCTEAQGYLFARPLLASELKQLLQGG

Sequences:

>Translated_751_residues
MLEWFVDHTRLGAGLWTSRDECLWQQNADGDPMTTLTVSGIGGELKLCLHGDVLTDGHQLLAKALLEGVAAALGGGESGL
LQSFMDAFDEHIWIKDAEGRYRFINQSTLVSWDLSPAQILSRKDAEVFPDRVSEYTDTDLKAVKEGHPIVVAECIDRSLD
KGNIWLETIKAPMYDMDGRLLGVIGTTRDIARYKAAEEQLFLTSKVFENAIEGVMITDSNGIITEINGAFETITGYSRDE
VIGKTPKLLNSGRHERDFFENLWRALKTQGHWHGEIWNRRKNGTLFAEQTSISAVYGEDGQVRCFVAVFSDISLLKQTEA
EVAQLAWHDPLTRLPNRSKLTTISQQQIKLAANRKTRLALLLIDVDLFKHINDSFGHLAGDKVLLSLSERLAALLGAEDT
LARIGGDEFVLLTQVRRRDDIPVILSAIQRAFDTSFDTSEGESVRLSASIGIAVYPDDGDNPDTLLKNADAAMYRAKQQG
RNRHAFYTEQMTQSSMQQLRLQTALRGAVKNSALSLVYQPKINLRTRKLIGVEALCRWTDHELGVVSPAEFIPVAESIGL
MPEIGLWVLKEACRQARIWRDQGLNPGRMAVNVSGSQLTGDNFADSVARVLTQTGLSPDALELEITESVVLDNPASAIDT
MDKLRGMGVSLALDDFGTGYSSLSYLRKLPLNKLKIDQSFVRELPTDQDSGAIAMAIIAMGEALKLGVIAEGVENETQAE
FLLRLGCTEAQGYLFARPLLASELKQLLQGG
>Mature_751_residues
MLEWFVDHTRLGAGLWTSRDECLWQQNADGDPMTTLTVSGIGGELKLCLHGDVLTDGHQLLAKALLEGVAAALGGGESGL
LQSFMDAFDEHIWIKDAEGRYRFINQSTLVSWDLSPAQILSRKDAEVFPDRVSEYTDTDLKAVKEGHPIVVAECIDRSLD
KGNIWLETIKAPMYDMDGRLLGVIGTTRDIARYKAAEEQLFLTSKVFENAIEGVMITDSNGIITEINGAFETITGYSRDE
VIGKTPKLLNSGRHERDFFENLWRALKTQGHWHGEIWNRRKNGTLFAEQTSISAVYGEDGQVRCFVAVFSDISLLKQTEA
EVAQLAWHDPLTRLPNRSKLTTISQQQIKLAANRKTRLALLLIDVDLFKHINDSFGHLAGDKVLLSLSERLAALLGAEDT
LARIGGDEFVLLTQVRRRDDIPVILSAIQRAFDTSFDTSEGESVRLSASIGIAVYPDDGDNPDTLLKNADAAMYRAKQQG
RNRHAFYTEQMTQSSMQQLRLQTALRGAVKNSALSLVYQPKINLRTRKLIGVEALCRWTDHELGVVSPAEFIPVAESIGL
MPEIGLWVLKEACRQARIWRDQGLNPGRMAVNVSGSQLTGDNFADSVARVLTQTGLSPDALELEITESVVLDNPASAIDT
MDKLRGMGVSLALDDFGTGYSSLSYLRKLPLNKLKIDQSFVRELPTDQDSGAIAMAIIAMGEALKLGVIAEGVENETQAE
FLLRLGCTEAQGYLFARPLLASELKQLLQGG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=545, Percent_Identity=34.4954128440367, Blast_Score=298, Evalue=1e-81,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=35.8974358974359, Blast_Score=259, Evalue=4e-70,
Organism=Escherichia coli, GI226510982, Length=429, Percent_Identity=31.7016317016317, Blast_Score=196, Evalue=4e-51,
Organism=Escherichia coli, GI1787055, Length=451, Percent_Identity=26.6075388026608, Blast_Score=166, Evalue=5e-42,
Organism=Escherichia coli, GI1790496, Length=254, Percent_Identity=34.6456692913386, Blast_Score=143, Evalue=4e-35,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=34.0080971659919, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=33.1967213114754, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1786507, Length=265, Percent_Identity=28.6792452830189, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI87082096, Length=426, Percent_Identity=25.3521126760563, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=35.1239669421488, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=429, Percent_Identity=26.8065268065268, Blast_Score=117, Evalue=4e-27,
Organism=Escherichia coli, GI1788502, Length=233, Percent_Identity=30.4721030042918, Blast_Score=112, Evalue=9e-26,
Organism=Escherichia coli, GI1788381, Length=496, Percent_Identity=25.4032258064516, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=36.7469879518072, Blast_Score=100, Evalue=7e-22,
Organism=Escherichia coli, GI145693134, Length=174, Percent_Identity=37.3563218390805, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87081881, Length=193, Percent_Identity=34.7150259067358, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI87082007, Length=160, Percent_Identity=34.375, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787802, Length=206, Percent_Identity=29.6116504854369, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=31.7073170731707, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=33.1288343558282, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=30.9090909090909, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1786584, Length=155, Percent_Identity=30.3225806451613, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1789650, Length=424, Percent_Identity=22.1698113207547, Blast_Score=73, Evalue=8e-14,
Organism=Escherichia coli, GI1787410, Length=225, Percent_Identity=24, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1788085, Length=198, Percent_Identity=26.2626262626263, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787056, Length=123, Percent_Identity=34.9593495934959, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 82836; Mature: 82836

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEWFVDHTRLGAGLWTSRDECLWQQNADGDPMTTLTVSGIGGELKLCLHGDVLTDGHQL
CCCEEECHHHCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCHHHH
LAKALLEGVAAALGGGESGLLQSFMDAFDEHIWIKDAEGRYRFINQSTLVSWDLSPAQIL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCEEEECCCEEEEECCCHHHHH
SRKDAEVFPDRVSEYTDTDLKAVKEGHPIVVAECIDRSLDKGNIWLETIKAPMYDMDGRL
CCCCCHHCCHHHHHHCCCHHHHHHCCCCEEEEHHHHCCCCCCCEEEEECCCCCCCCCCCE
LGVIGTTRDIARYKAAEEQLFLTSKVFENAIEGVMITDSNGIITEINGAFETITGYSRDE
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCHHHHCCCCHHH
VIGKTPKLLNSGRHERDFFENLWRALKTQGHWHGEIWNRRKNGTLFAEQTSISAVYGEDG
HCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEECCCEEEEECCCC
QVRCFVAVFSDISLLKQTEAEVAQLAWHDPLTRLPNRSKLTTISQQQIKLAANRKTRLAL
CEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEHHHHHHHHHCCCCCEEEE
LLIDVDLFKHINDSFGHLAGDKVLLSLSERLAALLGAEDTLARIGGDEFVLLTQVRRRDD
EEEEHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEHHCCCC
IPVILSAIQRAFDTSFDTSEGESVRLSASIGIAVYPDDGDNPDTLLKNADAAMYRAKQQG
CHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHCCHHHHHHHHHHC
RNRHAFYTEQMTQSSMQQLRLQTALRGAVKNSALSLVYQPKINLRTRKLIGVEALCRWTD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
HELGVVSPAEFIPVAESIGLMPEIGLWVLKEACRQARIWRDQGLNPGRMAVNVSGSQLTG
CCCCCCCCHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEECC
DNFADSVARVLTQTGLSPDALELEITESVVLDNPASAIDTMDKLRGMGVSLALDDFGTGY
CHHHHHHHHHHHHCCCCCCCEEEEEECCEEECCCHHHHHHHHHHHCCCEEEEECCCCCCH
SSLSYLRKLPLNKLKIDQSFVRELPTDQDSGAIAMAIIAMGEALKLGVIAEGVENETQAE
HHHHHHHHCCCCCEECCHHHHHHCCCCCCCCHHHHHHHHHCCHHEEHHHHCCCCCHHHHH
FLLRLGCTEAQGYLFARPLLASELKQLLQGG
HHHHHCCCCCCCEEEEHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLEWFVDHTRLGAGLWTSRDECLWQQNADGDPMTTLTVSGIGGELKLCLHGDVLTDGHQL
CCCEEECHHHCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCHHHH
LAKALLEGVAAALGGGESGLLQSFMDAFDEHIWIKDAEGRYRFINQSTLVSWDLSPAQIL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCEEEECCCEEEEECCCHHHHH
SRKDAEVFPDRVSEYTDTDLKAVKEGHPIVVAECIDRSLDKGNIWLETIKAPMYDMDGRL
CCCCCHHCCHHHHHHCCCHHHHHHCCCCEEEEHHHHCCCCCCCEEEEECCCCCCCCCCCE
LGVIGTTRDIARYKAAEEQLFLTSKVFENAIEGVMITDSNGIITEINGAFETITGYSRDE
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCHHHHCCCCHHH
VIGKTPKLLNSGRHERDFFENLWRALKTQGHWHGEIWNRRKNGTLFAEQTSISAVYGEDG
HCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEECCCEEEEECCCC
QVRCFVAVFSDISLLKQTEAEVAQLAWHDPLTRLPNRSKLTTISQQQIKLAANRKTRLAL
CEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEHHHHHHHHHCCCCCEEEE
LLIDVDLFKHINDSFGHLAGDKVLLSLSERLAALLGAEDTLARIGGDEFVLLTQVRRRDD
EEEEHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEHHCCCC
IPVILSAIQRAFDTSFDTSEGESVRLSASIGIAVYPDDGDNPDTLLKNADAAMYRAKQQG
CHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHCCHHHHHHHHHHC
RNRHAFYTEQMTQSSMQQLRLQTALRGAVKNSALSLVYQPKINLRTRKLIGVEALCRWTD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
HELGVVSPAEFIPVAESIGLMPEIGLWVLKEACRQARIWRDQGLNPGRMAVNVSGSQLTG
CCCCCCCCHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEECC
DNFADSVARVLTQTGLSPDALELEITESVVLDNPASAIDTMDKLRGMGVSLALDDFGTGY
CHHHHHHHHHHHHCCCCCCCEEEEEECCEEECCCHHHHHHHHHHHCCCEEEEECCCCCCH
SSLSYLRKLPLNKLKIDQSFVRELPTDQDSGAIAMAIIAMGEALKLGVIAEGVENETQAE
HHHHHHHHCCCCCEECCHHHHHHCCCCCCCCHHHHHHHHHCCHHEEHHHHCCCCCHHHHH
FLLRLGCTEAQGYLFARPLLASELKQLLQGG
HHHHHCCCCCCCEEEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]