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The map label for this gene is nodV [H]

Identifier: 119775534

GI number: 119775534

Start: 2882839

End: 2884665

Strand: Reverse

Name: nodV [H]

Synonym: Sama_2400

Alternate gene names: 119775534

Gene position: 2884665-2882839 (Counterclockwise)

Preceding gene: 119775538

Following gene: 119775533

Centisome position: 66.99

GC content: 57.25

Gene sequence:

>1827_bases
ATGAGTAAGGCATGGCGGCTTTTATTAATGTTGGCGTTGCTGCCAGTGGCGATGGCCTTTGCAGGGGGGGCAGCTGACGA
ACACGTTCAGGGCAAACAGGAGGTGCGTATTGGCATTCTGACCTTCGCCGAGCGCTCGGACACCCTGAATACCTGGCAGG
CCACCGCAGATTATCTTGCCCGGCAGACAGGACATGCCATCCGCATCGAACCGCTGACACCATCGGAGCTTGATAGGCAG
GTCAAGGCCCGGGCGCTGGACTTTATTATCTCCAACCAGTTTGTGGCTGTGGGGTACAAAAAAGACTGGGGCGCCAGTCA
ATTACTGACCCTTATTCCCGCTGACGGCCGGGATCCCGCCCGAGCCATGGGCTCGGCGCTGGTGGTGCGCGCAGGTGTTT
CGGTTACCCGTTGGCAGCAGCTTACCGATCTCAAGATTGTGTCCACTGATCCCCGGGCCTTTGGTGGCTTTCTGATTTTT
GCCGGTGAGATGGTGAGGCGCGGATTGGACCCCGTCAGGGATTTACCTGGACTCAGCTTTGCAGGGTTTCCTCAGACCAA
GCTGTTGCAAAAGCTCTGGCTGAACGAGGCTGATATGGCCATTTTGCCCGCCTGCGTATTGGAGCAGGCCATTGCCCGGG
GCGAGTACCCGCAGGGGGCATTTGATATTGCTTTGGCCAAAGCAACGTCCGGATTTGCCTGTGGTGTCTCGAGTGAACTC
TATCCCTATACCACATTATCCAAGCTTGGCCACACCCAAAGTGCCCTGGCAACCGAGGTGGCCAGGGCGTTGCTGTCGAT
GGAGGCCAATACAGCGGCGGCCATCAGTGGCGGCTATCGCGGCTGGTCTGTGCCGGTTAACGATAATCGGGTGTTTGCGC
TCAAACACACATTGAGAGAATGGCCGTTTCAAACCAACTGGCAGCGCGTCGCCTCTGCCGCCATGCCCTGGTTTGGGGCC
ATAGTTCTGTGCTTGCTCCTTGGGTATCTGCATCACCTGCGGATAAAGCGGCTGGTGGTGAAACGTACCCGGGCACTGGA
AACGGAGATTGAGCAGCATCGCGAGACCCAGCGGGCCTTTAACGAGCAGCAGCGTCAGTTTTATCGCGCTCAGCGGGTGC
TGCTCACCGGAGAGATGGCGTCGGGGATCTCCCATGAGCTGAAGCAACCGCTGGCGGGGATCCGTTATCTGGCCCAGGGC
TGCCTGTATCGGCTTAAAGATAATGAACCCGAGATAGCATCGGCCCTTGGCGGGGTACTGACACAGGTCGATAGGGCTCA
GGAAACCATCAGCCGCCTGCGAAGTTTCTGTCAGCAGCCCAGTCGCAGTGTGCCCTATCGGGTGGATACCCTGATTGAAG
AGACCCTGGCACTGATCTCCCCGGAGCTTAAACGGTTGAAACTTGAACCCTCATTGGCGCTGACTGAGGTCGAGGCCAGG
CTGGACCCCGGGCTTATGACTCAGGTGTTGGTGAATGTATTGCTCAATGCGCTGGATGCCATGGCCGGACAGCCCACGCC
GTGGCTTGGTATTGCTCTTGAGGCCAAAGACTCAGATTACCTTATCCGGGTCTCTGACAATGGCTGTGGGTTAACTGAGG
CGCAGCTTTCCAGGCTGTTTTTCCCATTTGAGTCGGCCAAGGCCGATGGATTGGGTTTGGGCATGGTTATTTGCAAACGT
ATCGTCGAAGAGCATGGGGGCAAAATTTCGGCCCAGAATCGTTTTCATCACTCCGCAATCGAGGGCCAAATCTATGCCCC
CATTCACAGCAGCCCCTGTGGGCTGGAAATATGCATAGAGATGCCCCGGGGAGCCGCTCATGATTGA

Upstream 100 bases:

>100_bases
CGCATATCAGGCTGTGAAGCGGATCAACTCCCGGGAAGTTAAAGATGCGGGATGCTCGGTTAGGGCCGATAATCCCGGTG
TAATCTAATCGGGGAATATG

Downstream 100 bases:

>100_bases
TGTGTATCTGGTGGATGACGACCCCGATGTATTGGCGTCACTGAAATGGATGCTCGAAGGCCTTGGCATCAAAGCGCGGG
CCTTTGCATCGGCAGAGGAC

Product: sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 608; Mature: 607

Protein sequence:

>608_residues
MSKAWRLLLMLALLPVAMAFAGGAADEHVQGKQEVRIGILTFAERSDTLNTWQATADYLARQTGHAIRIEPLTPSELDRQ
VKARALDFIISNQFVAVGYKKDWGASQLLTLIPADGRDPARAMGSALVVRAGVSVTRWQQLTDLKIVSTDPRAFGGFLIF
AGEMVRRGLDPVRDLPGLSFAGFPQTKLLQKLWLNEADMAILPACVLEQAIARGEYPQGAFDIALAKATSGFACGVSSEL
YPYTTLSKLGHTQSALATEVARALLSMEANTAAAISGGYRGWSVPVNDNRVFALKHTLREWPFQTNWQRVASAAMPWFGA
IVLCLLLGYLHHLRIKRLVVKRTRALETEIEQHRETQRAFNEQQRQFYRAQRVLLTGEMASGISHELKQPLAGIRYLAQG
CLYRLKDNEPEIASALGGVLTQVDRAQETISRLRSFCQQPSRSVPYRVDTLIEETLALISPELKRLKLEPSLALTEVEAR
LDPGLMTQVLVNVLLNALDAMAGQPTPWLGIALEAKDSDYLIRVSDNGCGLTEAQLSRLFFPFESAKADGLGLGMVICKR
IVEEHGGKISAQNRFHHSAIEGQIYAPIHSSPCGLEICIEMPRGAAHD

Sequences:

>Translated_608_residues
MSKAWRLLLMLALLPVAMAFAGGAADEHVQGKQEVRIGILTFAERSDTLNTWQATADYLARQTGHAIRIEPLTPSELDRQ
VKARALDFIISNQFVAVGYKKDWGASQLLTLIPADGRDPARAMGSALVVRAGVSVTRWQQLTDLKIVSTDPRAFGGFLIF
AGEMVRRGLDPVRDLPGLSFAGFPQTKLLQKLWLNEADMAILPACVLEQAIARGEYPQGAFDIALAKATSGFACGVSSEL
YPYTTLSKLGHTQSALATEVARALLSMEANTAAAISGGYRGWSVPVNDNRVFALKHTLREWPFQTNWQRVASAAMPWFGA
IVLCLLLGYLHHLRIKRLVVKRTRALETEIEQHRETQRAFNEQQRQFYRAQRVLLTGEMASGISHELKQPLAGIRYLAQG
CLYRLKDNEPEIASALGGVLTQVDRAQETISRLRSFCQQPSRSVPYRVDTLIEETLALISPELKRLKLEPSLALTEVEAR
LDPGLMTQVLVNVLLNALDAMAGQPTPWLGIALEAKDSDYLIRVSDNGCGLTEAQLSRLFFPFESAKADGLGLGMVICKR
IVEEHGGKISAQNRFHHSAIEGQIYAPIHSSPCGLEICIEMPRGAAHD
>Mature_607_residues
SKAWRLLLMLALLPVAMAFAGGAADEHVQGKQEVRIGILTFAERSDTLNTWQATADYLARQTGHAIRIEPLTPSELDRQV
KARALDFIISNQFVAVGYKKDWGASQLLTLIPADGRDPARAMGSALVVRAGVSVTRWQQLTDLKIVSTDPRAFGGFLIFA
GEMVRRGLDPVRDLPGLSFAGFPQTKLLQKLWLNEADMAILPACVLEQAIARGEYPQGAFDIALAKATSGFACGVSSELY
PYTTLSKLGHTQSALATEVARALLSMEANTAAAISGGYRGWSVPVNDNRVFALKHTLREWPFQTNWQRVASAAMPWFGAI
VLCLLLGYLHHLRIKRLVVKRTRALETEIEQHRETQRAFNEQQRQFYRAQRVLLTGEMASGISHELKQPLAGIRYLAQGC
LYRLKDNEPEIASALGGVLTQVDRAQETISRLRSFCQQPSRSVPYRVDTLIEETLALISPELKRLKLEPSLALTEVEARL
DPGLMTQVLVNVLLNALDAMAGQPTPWLGIALEAKDSDYLIRVSDNGCGLTEAQLSRLFFPFESAKADGLGLGMVICKRI
VEEHGGKISAQNRFHHSAIEGQIYAPIHSSPCGLEICIEMPRGAAHD

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process. NodV may function as a membrane-associated protein kinase that phosphorylates nodW in response to

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=217, Percent_Identity=30.4147465437788, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1790436, Length=226, Percent_Identity=30.9734513274336, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI1790300, Length=252, Percent_Identity=30.952380952381, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87081816, Length=259, Percent_Identity=27.7992277992278, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 66943; Mature: 66812

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAWRLLLMLALLPVAMAFAGGAADEHVQGKQEVRIGILTFAERSDTLNTWQATADYLA
CCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHEEEEEEEEECCCCCHHHHHHHHHHHH
RQTGHAIRIEPLTPSELDRQVKARALDFIISNQFVAVGYKKDWGASQLLTLIPADGRDPA
HHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHEEEEECCCCCCHH
RAMGSALVVRAGVSVTRWQQLTDLKIVSTDPRAFGGFLIFAGEMVRRGLDPVRDLPGLSF
HHHHHHHHHHCCCCHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCC
AGFPQTKLLQKLWLNEADMAILPACVLEQAIARGEYPQGAFDIALAKATSGFACGVSSEL
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHEEHHCCCCCEECCCCCC
YPYTTLSKLGHTQSALATEVARALLSMEANTAAAISGGYRGWSVPVNDNRVFALKHTLRE
CCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCCCCCCEEEEEHHHHHH
WPFQTNWQRVASAAMPWFGAIVLCLLLGYLHHLRIKRLVVKRTRALETEIEQHRETQRAF
CCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NEQQRQFYRAQRVLLTGEMASGISHELKQPLAGIRYLAQGCLYRLKDNEPEIASALGGVL
HHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
TQVDRAQETISRLRSFCQQPSRSVPYRVDTLIEETLALISPELKRLKLEPSLALTEVEAR
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHEECCCCHHHHHHHHH
LDPGLMTQVLVNVLLNALDAMAGQPTPWLGIALEAKDSDYLIRVSDNGCGLTEAQLSRLF
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHH
FPFESAKADGLGLGMVICKRIVEEHGGKISAQNRFHHSAIEGQIYAPIHSSPCGLEICIE
CCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHCCEEEECCCCCCCCEEEEEE
MPRGAAHD
CCCCCCCC
>Mature Secondary Structure 
SKAWRLLLMLALLPVAMAFAGGAADEHVQGKQEVRIGILTFAERSDTLNTWQATADYLA
CHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHEEEEEEEEECCCCCHHHHHHHHHHHH
RQTGHAIRIEPLTPSELDRQVKARALDFIISNQFVAVGYKKDWGASQLLTLIPADGRDPA
HHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHEEEEECCCCCCHH
RAMGSALVVRAGVSVTRWQQLTDLKIVSTDPRAFGGFLIFAGEMVRRGLDPVRDLPGLSF
HHHHHHHHHHCCCCHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCC
AGFPQTKLLQKLWLNEADMAILPACVLEQAIARGEYPQGAFDIALAKATSGFACGVSSEL
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHEEHHCCCCCEECCCCCC
YPYTTLSKLGHTQSALATEVARALLSMEANTAAAISGGYRGWSVPVNDNRVFALKHTLRE
CCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCCCCCCEEEEEHHHHHH
WPFQTNWQRVASAAMPWFGAIVLCLLLGYLHHLRIKRLVVKRTRALETEIEQHRETQRAF
CCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NEQQRQFYRAQRVLLTGEMASGISHELKQPLAGIRYLAQGCLYRLKDNEPEIASALGGVL
HHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
TQVDRAQETISRLRSFCQQPSRSVPYRVDTLIEETLALISPELKRLKLEPSLALTEVEAR
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHEECCCCHHHHHHHHH
LDPGLMTQVLVNVLLNALDAMAGQPTPWLGIALEAKDSDYLIRVSDNGCGLTEAQLSRLF
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHH
FPFESAKADGLGLGMVICKRIVEEHGGKISAQNRFHHSAIEGQIYAPIHSSPCGLEICIE
CCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHCCEEEECCCCCCCCEEEEEE
MPRGAAHD
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]