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The map label for this gene is smpA [H]

Identifier: 119775519

GI number: 119775519

Start: 2866119

End: 2866610

Strand: Direct

Name: smpA [H]

Synonym: Sama_2385

Alternate gene names: 119775519

Gene position: 2866119-2866610 (Clockwise)

Preceding gene: 119775512

Following gene: 119775522

Centisome position: 66.56

GC content: 49.8

Gene sequence:

>492_bases
ATGTTGAACAAGAAGCAAAGTCTTACCCTGCTGGGGGCCGCAGCCCTCTCACTGTCTCTCTCTGGCTGCAGTGTTTTCGA
TTGGCTGGTGTACAAGCCTGATATTCCTCAGGGTAACTACATGGAGCCACAGCAGGTTGAAAAGCTCAGAATCGAGATGA
CCAAGGAGCAGGCCGAATATGTGCTGGGCCGTCCTGTGCTCAGAGACAGCTTCGCTGACGATACCTGGTACTACGTGTAC
CATTTCAAAAGCGGTCGTGACGCCAGTGTCATTCACAAGGAATTAGTGCTGTATTTTGAAAATAATCAACTAGTTAAAGT
AACAGGTGATTATGAACTCTCCAGCGAGTTCAATACCCCACTGGAACAGAGTAAGCTGCCAAGTGTGAATGCAGCCGAAG
TCGTGCCTCAGGTGCCTGAACAACGCGGTGATGACAAGCCGTTGGTGGAAGAAGGCAAGGAAAACGATCCCAAGGCCATT
CGCAAGTTCTGA

Upstream 100 bases:

>100_bases
TCAAATTCCGGCAAATGATGGGTTTTCGGCAGCCACCCTTGTCAGTTTGACCCTGCCTTGGGTATGATGGCCCGCAGTTT
TTAAGGAATAAGCACTCACG

Downstream 100 bases:

>100_bases
TACGAAGATTAGCCCAATAAAAAAGCGCCACGCGGCGCTTTTTTATTGGCTGTTGCTCAGTAGTGAGCCGGCCATGGTAT
TTGAATCCGTTTTGTCCATA

Product: small protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MLNKKQSLTLLGAAALSLSLSGCSVFDWLVYKPDIPQGNYMEPQQVEKLRIEMTKEQAEYVLGRPVLRDSFADDTWYYVY
HFKSGRDASVIHKELVLYFENNQLVKVTGDYELSSEFNTPLEQSKLPSVNAAEVVPQVPEQRGDDKPLVEEGKENDPKAI
RKF

Sequences:

>Translated_163_residues
MLNKKQSLTLLGAAALSLSLSGCSVFDWLVYKPDIPQGNYMEPQQVEKLRIEMTKEQAEYVLGRPVLRDSFADDTWYYVY
HFKSGRDASVIHKELVLYFENNQLVKVTGDYELSSEFNTPLEQSKLPSVNAAEVVPQVPEQRGDDKPLVEEGKENDPKAI
RKF
>Mature_163_residues
MLNKKQSLTLLGAAALSLSLSGCSVFDWLVYKPDIPQGNYMEPQQVEKLRIEMTKEQAEYVLGRPVLRDSFADDTWYYVY
HFKSGRDASVIHKELVLYFENNQLVKVTGDYELSSEFNTPLEQSKLPSVNAAEVVPQVPEQRGDDKPLVEEGKENDPKAI
RKF

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=98, Percent_Identity=40.8163265306122, Blast_Score=87, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 18587; Mature: 18587

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKKQSLTLLGAAALSLSLSGCSVFDWLVYKPDIPQGNYMEPQQVEKLRIEMTKEQAEY
CCCCCCHHHHEEHHHHEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VLGRPVLRDSFADDTWYYVYHFKSGRDASVIHKELVLYFENNQLVKVTGDYELSSEFNTP
HHCCCHHHCCCCCCEEEEEEEECCCCCHHHHEEEEEEEECCCEEEEEECCEEECCCCCCC
LEQSKLPSVNAAEVVPQVPEQRGDDKPLVEEGKENDPKAIRKF
HHHHCCCCCCHHHHCCCCHHHCCCCCCHHHCCCCCCCHHHHCC
>Mature Secondary Structure
MLNKKQSLTLLGAAALSLSLSGCSVFDWLVYKPDIPQGNYMEPQQVEKLRIEMTKEQAEY
CCCCCCHHHHEEHHHHEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VLGRPVLRDSFADDTWYYVYHFKSGRDASVIHKELVLYFENNQLVKVTGDYELSSEFNTP
HHCCCHHHCCCCCCEEEEEEEECCCCCHHHHEEEEEEEECCCEEEEEECCEEECCCCCCC
LEQSKLPSVNAAEVVPQVPEQRGDDKPLVEEGKENDPKAIRKF
HHHHCCCCCCHHHHCCCCHHHCCCCCCHHHCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA