Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 119775510

GI number: 119775510

Start: 2853580

End: 2855325

Strand: Direct

Name: cph2 [H]

Synonym: Sama_2376

Alternate gene names: 119775510

Gene position: 2853580-2855325 (Clockwise)

Preceding gene: 119775509

Following gene: 119775511

Centisome position: 66.27

GC content: 51.78

Gene sequence:

>1746_bases
ATGCGACCGTTACAAAGCCTGAAGCGCAAACTCACTATCCTGTTTTACCTGATTTCTTTAATGACTGTCGGGATAGGGAT
TATTGCCGTTTCTCTTTCACAGTCGCTCAAATTACAGGTGGATGCCATGGTGGCCAACGACCTGGCCGAGGTTCGTTTGG
CCATGTCCCAGGTGAGGCTTGCCGAGCAATTACAAACGACCGTCGCCAAGCTTAAAAATGTCGTCGATGATACGGAGCGA
AGCGACCTGTTAAGAGAGCTTTCGGCCCAGTGGCAGCAATTATTGAATGGCACTCAAAAGCTTGGCAGCTTTCACCACAG
TGACGACCAAACATCGGCACTTGGCGAGCAGGCGATAATGCAACAGCAGATGCTGAGCACACTGGCTCGACTCGATGAGT
TCAGTAGCCAGGCGCTGCTATCCCGATTACAGGTAGCCAACCTTATTCAGAATCTCAATGACATGCAGGCTGGATTTGTC
AGGGAGTACAGAGACAACCTCGGAAACCTGGATGAACGTGCCCGGGATGCCATGACGCAGGGTAATATTCCGGCCCTTAA
TTCGCTGCTTTCAGACCATCACATCAATTCAGAGTTTTTGCATCTGGGTGAGCGCCTGTTTGCCACCTTGCTGCGAACTA
CAGAGCATTTACCACCAGTGGAAATCAATTCCCTGCAGCGCCAAAGTCTGAGGCTTTTACGGGAAATGGAGCCCTTGGTA
AGTCAGCTCAATGACAGGGAGTCGGCGGACAATTGGCTGGCACAGCTGAAACATCAAATGGTCGGCAGTGACAATCTGTT
TGAGCTCAGTCGAAACCAGCAAAAACGCCGTGCGGTGGCAGGTACGCATTTTGACGAGCATGCCAACATGGCCCGCCAGA
GTGCCGACTTCTTCCAGGAAGAGTTCCGTCAAAGGGATGAAAACATCCGCAATGCCAGCCTGGACCTCAAACGGGATGCC
ATGGCATTTTTGGTATTGATTGTCGTGGCAGGTATCGTCTATTGCGGTCTGATTTGGCTCACCAACTGGCACTTTATTGC
CAAGGGGATCATCAACCCCGTCATTGCCACGCGCAATGCCATGAATGACATAGTCAATGAGAAGCTCGATACCGTCCTGC
CCAAGGCCGACAATTTGGAGCTTCAGCAAATGGTCAGCTCCCTCGAAACGCTCAAGAGCTACGCCGCTCAAGTGAAAGCC
ATCTCAGAAATCGACGGTCTGACCGGCATTCACAACCGCCGCTACTTTGACCTGAAGCTCGACGCCGCGCTTGCCCGTCA
CCAAAAGGAACACATCCACCTCGGGCTTATCATGTTTGATCTGGATTATTTTAAACAATTCAATGACACCTATGGCCATC
TGGCCGGGGATCAATGTCTCAAGGATGTGGTGAACCGGATAAAACAGCTGTTGCCCAATGGCAATGAGACCTTTGCCCGC
TATGGCGGCGAGGAATTCGTCTTATTAGTGCAAGGCTACGACTGGCGTGCTTTACGACAGATTGCCGAAGACATTCGTGA
GAGTATTGTCACCCTGGCAATTCCCCATCGCCAGACCCCTCAAGGTATAGCGACTCTGAGTTTGGGCATCGCACACCTGC
CACAGGATCAACGGGCCACGGCACAGGAGCTGATTGCAACCGGCGATACCGCACTGTACCGGGCAAAACGCCGTGGCAAA
AACTGTTGTGAATTCATGGTTGTCAGTACAAGCTACGAGCCCAAACCGGGCGATCCCTTGATTTAA

Upstream 100 bases:

>100_bases
AACCCAGTCATGCCGGTCAATACTTCACCGAGCTCAATCAAACTATCCTGAGACTGCAAAATAGCCAGGGAGAAACCGCG
GCAATGGAAAAATAGTCCGA

Downstream 100 bases:

>100_bases
TTGTTGCTAAACCCCATTGAGATAAAAAGGAAGTCAACTGGGAGTCACATGGCGGCACTCATCATCGTCAGTTTTCTGGG
GATACTCGGTATTTATTGGA

Product: GGDEF family protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 581; Mature: 581

Protein sequence:

>581_residues
MRPLQSLKRKLTILFYLISLMTVGIGIIAVSLSQSLKLQVDAMVANDLAEVRLAMSQVRLAEQLQTTVAKLKNVVDDTER
SDLLRELSAQWQQLLNGTQKLGSFHHSDDQTSALGEQAIMQQQMLSTLARLDEFSSQALLSRLQVANLIQNLNDMQAGFV
REYRDNLGNLDERARDAMTQGNIPALNSLLSDHHINSEFLHLGERLFATLLRTTEHLPPVEINSLQRQSLRLLREMEPLV
SQLNDRESADNWLAQLKHQMVGSDNLFELSRNQQKRRAVAGTHFDEHANMARQSADFFQEEFRQRDENIRNASLDLKRDA
MAFLVLIVVAGIVYCGLIWLTNWHFIAKGIINPVIATRNAMNDIVNEKLDTVLPKADNLELQQMVSSLETLKSYAAQVKA
ISEIDGLTGIHNRRYFDLKLDAALARHQKEHIHLGLIMFDLDYFKQFNDTYGHLAGDQCLKDVVNRIKQLLPNGNETFAR
YGGEEFVLLVQGYDWRALRQIAEDIRESIVTLAIPHRQTPQGIATLSLGIAHLPQDQRATAQELIATGDTALYRAKRRGK
NCCEFMVVSTSYEPKPGDPLI

Sequences:

>Translated_581_residues
MRPLQSLKRKLTILFYLISLMTVGIGIIAVSLSQSLKLQVDAMVANDLAEVRLAMSQVRLAEQLQTTVAKLKNVVDDTER
SDLLRELSAQWQQLLNGTQKLGSFHHSDDQTSALGEQAIMQQQMLSTLARLDEFSSQALLSRLQVANLIQNLNDMQAGFV
REYRDNLGNLDERARDAMTQGNIPALNSLLSDHHINSEFLHLGERLFATLLRTTEHLPPVEINSLQRQSLRLLREMEPLV
SQLNDRESADNWLAQLKHQMVGSDNLFELSRNQQKRRAVAGTHFDEHANMARQSADFFQEEFRQRDENIRNASLDLKRDA
MAFLVLIVVAGIVYCGLIWLTNWHFIAKGIINPVIATRNAMNDIVNEKLDTVLPKADNLELQQMVSSLETLKSYAAQVKA
ISEIDGLTGIHNRRYFDLKLDAALARHQKEHIHLGLIMFDLDYFKQFNDTYGHLAGDQCLKDVVNRIKQLLPNGNETFAR
YGGEEFVLLVQGYDWRALRQIAEDIRESIVTLAIPHRQTPQGIATLSLGIAHLPQDQRATAQELIATGDTALYRAKRRGK
NCCEFMVVSTSYEPKPGDPLI
>Mature_581_residues
MRPLQSLKRKLTILFYLISLMTVGIGIIAVSLSQSLKLQVDAMVANDLAEVRLAMSQVRLAEQLQTTVAKLKNVVDDTER
SDLLRELSAQWQQLLNGTQKLGSFHHSDDQTSALGEQAIMQQQMLSTLARLDEFSSQALLSRLQVANLIQNLNDMQAGFV
REYRDNLGNLDERARDAMTQGNIPALNSLLSDHHINSEFLHLGERLFATLLRTTEHLPPVEINSLQRQSLRLLREMEPLV
SQLNDRESADNWLAQLKHQMVGSDNLFELSRNQQKRRAVAGTHFDEHANMARQSADFFQEEFRQRDENIRNASLDLKRDA
MAFLVLIVVAGIVYCGLIWLTNWHFIAKGIINPVIATRNAMNDIVNEKLDTVLPKADNLELQQMVSSLETLKSYAAQVKA
ISEIDGLTGIHNRRYFDLKLDAALARHQKEHIHLGLIMFDLDYFKQFNDTYGHLAGDQCLKDVVNRIKQLLPNGNETFAR
YGGEEFVLLVQGYDWRALRQIAEDIRESIVTLAIPHRQTPQGIATLSLGIAHLPQDQRATAQELIATGDTALYRAKRRGK
NCCEFMVVSTSYEPKPGDPLI

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=189, Percent_Identity=37.037037037037, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=29.8850574712644, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=32.2222222222222, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787816, Length=190, Percent_Identity=31.5789473684211, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=33.7278106508876, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=30.1204819277108, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787056, Length=216, Percent_Identity=28.2407407407407, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787802, Length=186, Percent_Identity=30.1075268817204, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788381, Length=171, Percent_Identity=30.4093567251462, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87082007, Length=182, Percent_Identity=29.6703296703297, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI87081977, Length=180, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 65765; Mature: 65765

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCHHHHHHHHHCCCCCHHEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MRPLQSLKRKLTILFYLISLMTVGIGIIAVSLSQSLKLQVDAMVANDLAEVRLAMSQVRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEQLQTTVAKLKNVVDDTERSDLLRELSAQWQQLLNGTQKLGSFHHSDDQTSALGEQAIM
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
QQQMLSTLARLDEFSSQALLSRLQVANLIQNLNDMQAGFVREYRDNLGNLDERARDAMTQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
GNIPALNSLLSDHHINSEFLHLGERLFATLLRTTEHLPPVEINSLQRQSLRLLREMEPLV
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
SQLNDRESADNWLAQLKHQMVGSDNLFELSRNQQKRRAVAGTHFDEHANMARQSADFFQE
HHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
EFRQRDENIRNASLDLKRDAMAFLVLIVVAGIVYCGLIWLTNWHFIAKGIINPVIATRNA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNDIVNEKLDTVLPKADNLELQQMVSSLETLKSYAAQVKAISEIDGLTGIHNRRYFDLKL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEH
DAALARHQKEHIHLGLIMFDLDYFKQFNDTYGHLAGDQCLKDVVNRIKQLLPNGNETFAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
YGGEEFVLLVQGYDWRALRQIAEDIRESIVTLAIPHRQTPQGIATLSLGIAHLPQDQRAT
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH
AQELIATGDTALYRAKRRGKNCCEFMVVSTSYEPKPGDPLI
HHHHHHCCHHHHHHHHHCCCCCHHEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]