Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775509

Identifier: 119775509

GI number: 119775509

Start: 2852135

End: 2853574

Strand: Direct

Name: 119775509

Synonym: Sama_2375

Alternate gene names: NA

Gene position: 2852135-2853574 (Clockwise)

Preceding gene: 119775508

Following gene: 119775510

Centisome position: 66.23

GC content: 51.11

Gene sequence:

>1440_bases
ATGGCGCTTTTACCCAGACTCAGTAGCGTGGGATTATTGCTTTTCCTGACCTCTACCTCTTTATGGGCAGAATTCTCTTT
AAGTGAAATCCCACCTCTTGACAATAAAACCCCCATCACTCTGGTGGCCGAAACCGGCTTCTGGACCGACTACCTACAGA
CAAAAATGCTACCGGCATTCACCAGGCAAACCGGCATTGAAGTGAAAGTGGTCAGTACACAACTGGACGACATGTTCAAT
TTGCAACAGGCCTCACTCAGGATGGCCAAAGGGGAATTCGATTTACTGTCAATGGAAGCTGGCTGGGCCAAAGAGTGGGC
GGCCAATGGTTACACTGTGCCTCTGGAAGAGCTGGCAGGTCTATATGACCCAGGCGGCACCAAAGCCATGTCGCGCTATC
TCGAGCCCTATTATCCTTCGCTGCTGAGCATTCTGTCTTATCGGGGAGAAGTTCACGCCATCCCCTACAACAATTACGTG
ATGGGCAATCATTTTCGGCGCGATCTTTTTGAAAATGCTGACGAACAAAAACATTTCCTTGAACGCTACGGCTATCCCCT
CAAGGCGCCAGACACACTCGTGCAGCTTAAGGATATTGCAGAGTTTTTTACCCGAAAACCAGGCGACGTGCTCGCCGGTA
AATTGCTGAAACAGCCTTTCTATGGTGTTGCGCTGATGTCCGGTAACAAGCCCCACATCAACGATGAATTTTCAGCGATT
TTGTGGAGCATGGGTGACCGTTGGTTTACCCCGGTTTATGAAGACAACGGGCGACTGAATCACTTCGAAGTCAGTCGTAA
TCTGGATAAAAAGCTGCAGGTCGCCAATTACTATCAGTCCATTAAGCCCTTTGCCATTCCGGCCGACGACGCCTTTGCCT
TTAACGAAGCCGCCGACGCCCTCGCCAATGGCCGGGTGGCCATGTGGCCCTTTGCTTATAACAACTTATGGCTTAAATCC
GCCGTCGTTGAGAAAAAAGTGGAAGGGGCACGTCTCGATGTGGCTCAGGTAGCGGGAGGTAAACCCTATGTTGGTGCCTA
TGCCTTTGCAGTAAGTTACGACAGCCGTAACCCCGAAGCCGCGTACTGGCTACTGAAGTACATGGGTTCGTTTCAGGCAC
AATATGATTACGCCATGGGCGGTGGTAATCCCTGTCGTATTGATGTGGCAACCCACACAGATTTTCAGGCTCCTGGCCTG
AAAGCCATCGGCGGCGCATTTATGGCAAGCCACCAAGCGAATCTGGCTTGGGCCGGTGATATCCGCACCATGGGACACTT
TACCAGTTCAGTCATGGGGCAAATTTACCCGGAGCTTGCAAAAACCTGCTTTGCCGTGAGCCGCCAACCCAGTCATGCCG
GTCAATACTTCACCGAGCTCAATCAAACTATCCTGAGACTGCAAAATAGCCAGGGAGAAACCGCGGCAATGGAAAAATAG

Upstream 100 bases:

>100_bases
AACAAGCCATCTGGCATTTGACCTGAGTTACGTACATAATCCCTCCAAACACTCTCCACAGCCAAATCCACAACAGAAGC
TACTGCAATTAATAGAAAAA

Downstream 100 bases:

>100_bases
TCCGAATGCGACCGTTACAAAGCCTGAAGCGCAAACTCACTATCCTGTTTTACCTGATTTCTTTAATGACTGTCGGGATA
GGGATTATTGCCGTTTCTCT

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MALLPRLSSVGLLLFLTSTSLWAEFSLSEIPPLDNKTPITLVAETGFWTDYLQTKMLPAFTRQTGIEVKVVSTQLDDMFN
LQQASLRMAKGEFDLLSMEAGWAKEWAANGYTVPLEELAGLYDPGGTKAMSRYLEPYYPSLLSILSYRGEVHAIPYNNYV
MGNHFRRDLFENADEQKHFLERYGYPLKAPDTLVQLKDIAEFFTRKPGDVLAGKLLKQPFYGVALMSGNKPHINDEFSAI
LWSMGDRWFTPVYEDNGRLNHFEVSRNLDKKLQVANYYQSIKPFAIPADDAFAFNEAADALANGRVAMWPFAYNNLWLKS
AVVEKKVEGARLDVAQVAGGKPYVGAYAFAVSYDSRNPEAAYWLLKYMGSFQAQYDYAMGGGNPCRIDVATHTDFQAPGL
KAIGGAFMASHQANLAWAGDIRTMGHFTSSVMGQIYPELAKTCFAVSRQPSHAGQYFTELNQTILRLQNSQGETAAMEK

Sequences:

>Translated_479_residues
MALLPRLSSVGLLLFLTSTSLWAEFSLSEIPPLDNKTPITLVAETGFWTDYLQTKMLPAFTRQTGIEVKVVSTQLDDMFN
LQQASLRMAKGEFDLLSMEAGWAKEWAANGYTVPLEELAGLYDPGGTKAMSRYLEPYYPSLLSILSYRGEVHAIPYNNYV
MGNHFRRDLFENADEQKHFLERYGYPLKAPDTLVQLKDIAEFFTRKPGDVLAGKLLKQPFYGVALMSGNKPHINDEFSAI
LWSMGDRWFTPVYEDNGRLNHFEVSRNLDKKLQVANYYQSIKPFAIPADDAFAFNEAADALANGRVAMWPFAYNNLWLKS
AVVEKKVEGARLDVAQVAGGKPYVGAYAFAVSYDSRNPEAAYWLLKYMGSFQAQYDYAMGGGNPCRIDVATHTDFQAPGL
KAIGGAFMASHQANLAWAGDIRTMGHFTSSVMGQIYPELAKTCFAVSRQPSHAGQYFTELNQTILRLQNSQGETAAMEK
>Mature_478_residues
ALLPRLSSVGLLLFLTSTSLWAEFSLSEIPPLDNKTPITLVAETGFWTDYLQTKMLPAFTRQTGIEVKVVSTQLDDMFNL
QQASLRMAKGEFDLLSMEAGWAKEWAANGYTVPLEELAGLYDPGGTKAMSRYLEPYYPSLLSILSYRGEVHAIPYNNYVM
GNHFRRDLFENADEQKHFLERYGYPLKAPDTLVQLKDIAEFFTRKPGDVLAGKLLKQPFYGVALMSGNKPHINDEFSAIL
WSMGDRWFTPVYEDNGRLNHFEVSRNLDKKLQVANYYQSIKPFAIPADDAFAFNEAADALANGRVAMWPFAYNNLWLKSA
VVEKKVEGARLDVAQVAGGKPYVGAYAFAVSYDSRNPEAAYWLLKYMGSFQAQYDYAMGGGNPCRIDVATHTDFQAPGLK
AIGGAFMASHQANLAWAGDIRTMGHFTSSVMGQIYPELAKTCFAVSRQPSHAGQYFTELNQTILRLQNSQGETAAMEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53550; Mature: 53419

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLPRLSSVGLLLFLTSTSLWAEFSLSEIPPLDNKTPITLVAETGFWTDYLQTKMLPAF
CCCCCCHHHCCEEEEEECCHHHHCCCHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
TRQTGIEVKVVSTQLDDMFNLQQASLRMAKGEFDLLSMEAGWAKEWAANGYTVPLEELAG
HHCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEECHHHHCC
LYDPGGTKAMSRYLEPYYPSLLSILSYRGEVHAIPYNNYVMGNHFRRDLFENADEQKHFL
CCCCCCHHHHHHHHCHHHHHHHHHHHCCCCEEEECCCCEEECCHHHHHHHCCCCHHHHHH
ERYGYPLKAPDTLVQLKDIAEFFTRKPGDVLAGKLLKQPFYGVALMSGNKPHINDEFSAI
HHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
LWSMGDRWFTPVYEDNGRLNHFEVSRNLDKKLQVANYYQSIKPFAIPADDAFAFNEAADA
HHHCCCCEECCEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
LANGRVAMWPFAYNNLWLKSAVVEKKVEGARLDVAQVAGGKPYVGAYAFAVSYDSRNPEA
HHCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEHHHHCCCCCCEEEEEEEEEECCCCCHH
AYWLLKYMGSFQAQYDYAMGGGNPCRIDVATHTDFQAPGLKAIGGAFMASHQANLAWAGD
HHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECC
IRTMGHFTSSVMGQIYPELAKTCFAVSRQPSHAGQYFTELNQTILRLQNSQGETAAMEK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ALLPRLSSVGLLLFLTSTSLWAEFSLSEIPPLDNKTPITLVAETGFWTDYLQTKMLPAF
CCCCCHHHCCEEEEEECCHHHHCCCHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
TRQTGIEVKVVSTQLDDMFNLQQASLRMAKGEFDLLSMEAGWAKEWAANGYTVPLEELAG
HHCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEECHHHHCC
LYDPGGTKAMSRYLEPYYPSLLSILSYRGEVHAIPYNNYVMGNHFRRDLFENADEQKHFL
CCCCCCHHHHHHHHCHHHHHHHHHHHCCCCEEEECCCCEEECCHHHHHHHCCCCHHHHHH
ERYGYPLKAPDTLVQLKDIAEFFTRKPGDVLAGKLLKQPFYGVALMSGNKPHINDEFSAI
HHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
LWSMGDRWFTPVYEDNGRLNHFEVSRNLDKKLQVANYYQSIKPFAIPADDAFAFNEAADA
HHHCCCCEECCEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
LANGRVAMWPFAYNNLWLKSAVVEKKVEGARLDVAQVAGGKPYVGAYAFAVSYDSRNPEA
HHCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEHHHHCCCCCCEEEEEEEEEECCCCCHH
AYWLLKYMGSFQAQYDYAMGGGNPCRIDVATHTDFQAPGLKAIGGAFMASHQANLAWAGD
HHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECC
IRTMGHFTSSVMGQIYPELAKTCFAVSRQPSHAGQYFTELNQTILRLQNSQGETAAMEK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA