| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775489
Identifier: 119775489
GI number: 119775489
Start: 2827640
End: 2828020
Strand: Reverse
Name: 119775489
Synonym: Sama_2354
Alternate gene names: NA
Gene position: 2828020-2827640 (Counterclockwise)
Preceding gene: 119775490
Following gene: 119775487
Centisome position: 65.67
GC content: 53.28
Gene sequence:
>381_bases ATGAAGATTGACCACATCACCCTTTTGGTGTCATCGCTGGAAATAAGCATGCCTTACTACGAGCAATTACTGCCCTTGCT CGGTTTTTCAAAAAAGAAAAACCACATCTGGACGGATGGTGAGGGCTTTTTCTTTCAATTCCTGCAGGCAAAAACGGGTA CCTCAGCCTATGAGCGTTACGGCGCCGGCATGAATCACCTGGGCTTTGGCGCCTCATTGCCTGAGCAGGTTTATGGGGTG CGCGCCGCCATGGCGGAGGCGGGGTTTGAGGTGCCTGAGGTGCAAAATCTCGGTGGTGCCGTCGCCCTGTTTATGAAAGA CCCTGACGGGGTGCGCTTCGAAGTCACCTATTACCCACCGGGGATGGCTGTGGTTGATTAA
Upstream 100 bases:
>100_bases GAATTAAACGCGGGTAGTGGGCTTGCAAAGCCAGTGGCGCAGTCGTTGAATAAATGACTCACTTTCATGTCTGGATTTAG AAACAGGGAACAGTTCGCTT
Downstream 100 bases:
>100_bases CCTCTGTGGGTGTACTGCTTTCTCCTCAGTGCCCGTGTTCGACCAACAACAATCATGAAATCATTTTCTTATAAAGGGCT GCGACCTTTGGAAGCGTGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 126; Mature: 126
Protein sequence:
>126_residues MKIDHITLLVSSLEISMPYYEQLLPLLGFSKKKNHIWTDGEGFFFQFLQAKTGTSAYERYGAGMNHLGFGASLPEQVYGV RAAMAEAGFEVPEVQNLGGAVALFMKDPDGVRFEVTYYPPGMAVVD
Sequences:
>Translated_126_residues MKIDHITLLVSSLEISMPYYEQLLPLLGFSKKKNHIWTDGEGFFFQFLQAKTGTSAYERYGAGMNHLGFGASLPEQVYGV RAAMAEAGFEVPEVQNLGGAVALFMKDPDGVRFEVTYYPPGMAVVD >Mature_126_residues MKIDHITLLVSSLEISMPYYEQLLPLLGFSKKKNHIWTDGEGFFFQFLQAKTGTSAYERYGAGMNHLGFGASLPEQVYGV RAAMAEAGFEVPEVQNLGGAVALFMKDPDGVRFEVTYYPPGMAVVD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13918; Mature: 13918
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIDHITLLVSSLEISMPYYEQLLPLLGFSKKKNHIWTDGEGFFFQFLQAKTGTSAYERY CCCCHHEEEEEHHCCCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHCCCCHHHHHH GAGMNHLGFGASLPEQVYGVRAAMAEAGFEVPEVQNLGGAVALFMKDPDGVRFEVTYYPP CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECC GMAVVD CEEECC >Mature Secondary Structure MKIDHITLLVSSLEISMPYYEQLLPLLGFSKKKNHIWTDGEGFFFQFLQAKTGTSAYERY CCCCHHEEEEEHHCCCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHCCCCHHHHHH GAGMNHLGFGASLPEQVYGVRAAMAEAGFEVPEVQNLGGAVALFMKDPDGVRFEVTYYPP CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECC GMAVVD CEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA