Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775474

Identifier: 119775474

GI number: 119775474

Start: 2805933

End: 2806484

Strand: Direct

Name: 119775474

Synonym: Sama_2339

Alternate gene names: NA

Gene position: 2805933-2806484 (Clockwise)

Preceding gene: 119775473

Following gene: 119775477

Centisome position: 65.16

GC content: 51.81

Gene sequence:

>552_bases
ATGAAGTCACTCCTTTCCCTGCTGTTACTCTGCCTTTCTTTTCAGGGTGTTGCCAAAGAGGTTGCGGGTATAGCCCTGCC
CGATAGCCTGTTGCAGGATAATCACGCCTATGTGCTCAATGGCGCCGGGGTACGCAGTAAATTTTTTATGGACCTATACG
TCGGCAGCCTCTATCTAACCACCACAGCCGACACAGCCGATAAGGTGATGGCACAGGATAAAGCCATCATCCGGCTGGAT
ATTCTGTCTGACCTTATCACCAGCGAGAAAATGCGTAACGCAATTAACGAAGGCTTTGAAGCCGCAACCGATGGCAAACA
GGATGACGCCATGAAGGCCAGCATCGCCACCTTTATGACGCTGTTTGAAGCCGATATCAAACCAGGCGACAACTTCGTGC
TGATTGCTGGCCGGGATGGCGTGGAAGCCATCAAAAATGATGTCCCCCTACCTAAAGTAGGTGATGCAACCTTTGCTGCG
GCCCTTCTGAAAATCTGGCTCGGCGAGCATCCGGCCCAGAAAAGCCTTAAGCAGGAAATGCTCGGACGTTGA

Upstream 100 bases:

>100_bases
CTCTTTACCCAGGATGGCAATGTGCAATTGGGCGTTCGCAGCTAATATCTACCCAGGTCGGTTTCCTCCCGCCCTGCCCC
TCTTTTTTCCCGGAGCCGTT

Downstream 100 bases:

>100_bases
TGCATCATCCCTAAGACCAAAAAGGACCCTGTGGGTCCTTTTTGGGTTTCTGCATTGTTCAGCGCTAACGGTTTTACCGC
CGTGTATTCTGGAGCTGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: Exported Protein

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKSLLSLLLLCLSFQGVAKEVAGIALPDSLLQDNHAYVLNGAGVRSKFFMDLYVGSLYLTTTADTADKVMAQDKAIIRLD
ILSDLITSEKMRNAINEGFEAATDGKQDDAMKASIATFMTLFEADIKPGDNFVLIAGRDGVEAIKNDVPLPKVGDATFAA
ALLKIWLGEHPAQKSLKQEMLGR

Sequences:

>Translated_183_residues
MKSLLSLLLLCLSFQGVAKEVAGIALPDSLLQDNHAYVLNGAGVRSKFFMDLYVGSLYLTTTADTADKVMAQDKAIIRLD
ILSDLITSEKMRNAINEGFEAATDGKQDDAMKASIATFMTLFEADIKPGDNFVLIAGRDGVEAIKNDVPLPKVGDATFAA
ALLKIWLGEHPAQKSLKQEMLGR
>Mature_183_residues
MKSLLSLLLLCLSFQGVAKEVAGIALPDSLLQDNHAYVLNGAGVRSKFFMDLYVGSLYLTTTADTADKVMAQDKAIIRLD
ILSDLITSEKMRNAINEGFEAATDGKQDDAMKASIATFMTLFEADIKPGDNFVLIAGRDGVEAIKNDVPLPKVGDATFAA
ALLKIWLGEHPAQKSLKQEMLGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19778; Mature: 19778

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLLSLLLLCLSFQGVAKEVAGIALPDSLLQDNHAYVLNGAGVRSKFFMDLYVGSLYLT
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHCEEEEE
TTADTADKVMAQDKAIIRLDILSDLITSEKMRNAINEGFEAATDGKQDDAMKASIATFMT
ECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHH
LFEADIKPGDNFVLIAGRDGVEAIKNDVPLPKVGDATFAAALLKIWLGEHPAQKSLKQEM
HHHHCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
LGR
HCC
>Mature Secondary Structure
MKSLLSLLLLCLSFQGVAKEVAGIALPDSLLQDNHAYVLNGAGVRSKFFMDLYVGSLYLT
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHCEEEEE
TTADTADKVMAQDKAIIRLDILSDLITSEKMRNAINEGFEAATDGKQDDAMKASIATFMT
ECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHH
LFEADIKPGDNFVLIAGRDGVEAIKNDVPLPKVGDATFAAALLKIWLGEHPAQKSLKQEM
HHHHCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
LGR
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA