| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is mpg1 [H]
Identifier: 119775470
GI number: 119775470
Start: 2800658
End: 2801716
Strand: Direct
Name: mpg1 [H]
Synonym: Sama_2335
Alternate gene names: 119775470
Gene position: 2800658-2801716 (Clockwise)
Preceding gene: 119775469
Following gene: 119775471
Centisome position: 65.04
GC content: 43.63
Gene sequence:
>1059_bases ATGACTGAAAAGTGGAAATCTGTAACTCTTTCAGCGACATCTACCATCCGCGAGGCGCTTGAAATTATCAACAGAGAAGC CTTAAGAGTAGCGCTGGTGGTTGATAAAGATCGAAATCTTGTGGGCGTTGTCACCGATGGTGATATTCGAAGAGGTCTGC TAAAGAACTTATCTCTTTCAGATGGCATCGCTTTGGTAATGAATACCAATCCAACCACGGCAGAATCGGGTACGCCGAAG CAAGACCTCGTTGAATTGATGCAACGCAAAGGGATTATCTCAGTACCACTGTTGAAAAACGGTAAAATCGTCGGGCTGGA AACTCTCCAAAGTGCGCTGACCAGACCTACTTACCCCAACCCTGTTCTGATCATGGCGGGCGGCTTTGGCACCAGGCTAA AACCTTTAACCGATGACTGTCCAAAACCAATGCTTAAGATAGGTCAACGCCCCATTCTTGAAACCTTGATTATGCAAATG GTGAAATGTGGTTTTGAGCATTTTTACGTATCAACCCATTACATGCCTGAAAAAATCCATTCTCATTTTGGTGATGGTAA AAATTTTGGTGCGAATATCACCTATGTTCACGAAGATGTCCCTCTCGGAACGGGAGGTGCGTTAGGATTAGTGAAAGATA AACTACAGGATGACCTGCCGTTAATCGTGATCAATGGGGATGTATTAACCACAGTCAACTTTGAGCGACTTCTTGAGTTC CATTTAATCAATCAAGCAGATGCGACAATGTGCGTGCGGGAATATGAGTATCAGGTGCCCTACGGCGTAATCACTACCAA GGGAAAGAAAATCTCCGGAATGGTGGAAAAGCCTGTACAGCATTTCTTTGTAAATGCAGGGATCTATGTGGTATCCCCTG CTGTATATAAATCCGTCGAACCAAACAGTCACATAGATATGCCAGCTTTACTTGAAAAACACATGCATGCACGTGACAGA GTCTACACATTCCCTATCCATGAATATTGGCTGGATATTGGTCGAATGGATGAGTTCAACAAAGCACAATCTGACATAGA AGTGTTAGGGATTAATTAA
Upstream 100 bases:
>100_bases CTTGGATTTATCAAATCGAATGAGTCACTACTCCGAACATTTGCCCAAGAAGAGCAGCCTTTAAAATTCTATAAATTTAT CAAAAACATCGGTGAACACC
Downstream 100 bases:
>100_bases TGCTTAACGATAAACGTGTGCTGGCTCTCATACCTGCTCGAGGCGGCAGCAAACGCCTTCCGCGTAAAAATATTCGTCTA CTTAAGGGTATTCCCCTTAT
Product: putative sugar-phosphate nucleotide transferase
Products: NA
Alternate protein names: ATP-mannose-1-phosphate guanylyltransferase; GDP-mannose pyrophosphorylase; NDP-hexose pyrophosphorylase [H]
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MTEKWKSVTLSATSTIREALEIINREALRVALVVDKDRNLVGVVTDGDIRRGLLKNLSLSDGIALVMNTNPTTAESGTPK QDLVELMQRKGIISVPLLKNGKIVGLETLQSALTRPTYPNPVLIMAGGFGTRLKPLTDDCPKPMLKIGQRPILETLIMQM VKCGFEHFYVSTHYMPEKIHSHFGDGKNFGANITYVHEDVPLGTGGALGLVKDKLQDDLPLIVINGDVLTTVNFERLLEF HLINQADATMCVREYEYQVPYGVITTKGKKISGMVEKPVQHFFVNAGIYVVSPAVYKSVEPNSHIDMPALLEKHMHARDR VYTFPIHEYWLDIGRMDEFNKAQSDIEVLGIN
Sequences:
>Translated_352_residues MTEKWKSVTLSATSTIREALEIINREALRVALVVDKDRNLVGVVTDGDIRRGLLKNLSLSDGIALVMNTNPTTAESGTPK QDLVELMQRKGIISVPLLKNGKIVGLETLQSALTRPTYPNPVLIMAGGFGTRLKPLTDDCPKPMLKIGQRPILETLIMQM VKCGFEHFYVSTHYMPEKIHSHFGDGKNFGANITYVHEDVPLGTGGALGLVKDKLQDDLPLIVINGDVLTTVNFERLLEF HLINQADATMCVREYEYQVPYGVITTKGKKISGMVEKPVQHFFVNAGIYVVSPAVYKSVEPNSHIDMPALLEKHMHARDR VYTFPIHEYWLDIGRMDEFNKAQSDIEVLGIN >Mature_351_residues TEKWKSVTLSATSTIREALEIINREALRVALVVDKDRNLVGVVTDGDIRRGLLKNLSLSDGIALVMNTNPTTAESGTPKQ DLVELMQRKGIISVPLLKNGKIVGLETLQSALTRPTYPNPVLIMAGGFGTRLKPLTDDCPKPMLKIGQRPILETLIMQMV KCGFEHFYVSTHYMPEKIHSHFGDGKNFGANITYVHEDVPLGTGGALGLVKDKLQDDLPLIVINGDVLTTVNFERLLEFH LINQADATMCVREYEYQVPYGVITTKGKKISGMVEKPVQHFFVNAGIYVVSPAVYKSVEPNSHIDMPALLEKHMHARDRV YTFPIHEYWLDIGRMDEFNKAQSDIEVLGIN
Specific function: Not Known. [C]
COG id: COG1208
COG function: function code MJ; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transferase hexapeptide repeat family [H]
Homologues:
Organism=Homo sapiens, GI11761621, Length=228, Percent_Identity=31.5789473684211, Blast_Score=123, Evalue=2e-28, Organism=Homo sapiens, GI11761619, Length=228, Percent_Identity=31.5789473684211, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI133931050, Length=228, Percent_Identity=29.3859649122807, Blast_Score=113, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6320148, Length=228, Percent_Identity=32.8947368421053, Blast_Score=118, Evalue=1e-27, Organism=Drosophila melanogaster, GI21355443, Length=227, Percent_Identity=32.15859030837, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI24644084, Length=227, Percent_Identity=32.15859030837, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI24653912, Length=219, Percent_Identity=26.4840182648402, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005835 [H]
Pfam domain/function: PF00483 NTP_transferase [H]
EC number: =2.7.7.13 [H]
Molecular weight: Translated: 39254; Mature: 39123
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEKWKSVTLSATSTIREALEIINREALRVALVVDKDRNLVGVVTDGDIRRGLLKNLSLS CCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCHHHHHHHHCCCCC DGIALVMNTNPTTAESGTPKQDLVELMQRKGIISVPLLKNGKIVGLETLQSALTRPTYPN CCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCEEEHHHHHHHHCCCCCCC PVLIMAGGFGTRLKPLTDDCPKPMLKIGQRPILETLIMQMVKCGFEHFYVSTHYMPEKIH CEEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCHHHEEEEECCCHHHHH SHFGDGKNFGANITYVHEDVPLGTGGALGLVKDKLQDDLPLIVINGDVLTTVNFERLLEF HHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCEEEEECHHHHHHH HLINQADATMCVREYEYQVPYGVITTKGKKISGMVEKPVQHFFVNAGIYVVSPAVYKSVE HHCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECHHHHHCCC PNSHIDMPALLEKHMHARDRVYTFPIHEYWLDIGRMDEFNKAQSDIEVLGIN CCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCHHHHCCCCEEEEECC >Mature Secondary Structure TEKWKSVTLSATSTIREALEIINREALRVALVVDKDRNLVGVVTDGDIRRGLLKNLSLS CCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCHHHHHHHHCCCCC DGIALVMNTNPTTAESGTPKQDLVELMQRKGIISVPLLKNGKIVGLETLQSALTRPTYPN CCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCEEEHHHHHHHHCCCCCCC PVLIMAGGFGTRLKPLTDDCPKPMLKIGQRPILETLIMQMVKCGFEHFYVSTHYMPEKIH CEEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCHHHEEEEECCCHHHHH SHFGDGKNFGANITYVHEDVPLGTGGALGLVKDKLQDDLPLIVINGDVLTTVNFERLLEF HHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCEEEEECHHHHHHH HLINQADATMCVREYEYQVPYGVITTKGKKISGMVEKPVQHFFVNAGIYVVSPAVYKSVE HHCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECHHHHHCCC PNSHIDMPALLEKHMHARDRVYTFPIHEYWLDIGRMDEFNKAQSDIEVLGIN CCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCHHHHCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8334170 [H]