Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is mpg1 [H]

Identifier: 119775470

GI number: 119775470

Start: 2800658

End: 2801716

Strand: Direct

Name: mpg1 [H]

Synonym: Sama_2335

Alternate gene names: 119775470

Gene position: 2800658-2801716 (Clockwise)

Preceding gene: 119775469

Following gene: 119775471

Centisome position: 65.04

GC content: 43.63

Gene sequence:

>1059_bases
ATGACTGAAAAGTGGAAATCTGTAACTCTTTCAGCGACATCTACCATCCGCGAGGCGCTTGAAATTATCAACAGAGAAGC
CTTAAGAGTAGCGCTGGTGGTTGATAAAGATCGAAATCTTGTGGGCGTTGTCACCGATGGTGATATTCGAAGAGGTCTGC
TAAAGAACTTATCTCTTTCAGATGGCATCGCTTTGGTAATGAATACCAATCCAACCACGGCAGAATCGGGTACGCCGAAG
CAAGACCTCGTTGAATTGATGCAACGCAAAGGGATTATCTCAGTACCACTGTTGAAAAACGGTAAAATCGTCGGGCTGGA
AACTCTCCAAAGTGCGCTGACCAGACCTACTTACCCCAACCCTGTTCTGATCATGGCGGGCGGCTTTGGCACCAGGCTAA
AACCTTTAACCGATGACTGTCCAAAACCAATGCTTAAGATAGGTCAACGCCCCATTCTTGAAACCTTGATTATGCAAATG
GTGAAATGTGGTTTTGAGCATTTTTACGTATCAACCCATTACATGCCTGAAAAAATCCATTCTCATTTTGGTGATGGTAA
AAATTTTGGTGCGAATATCACCTATGTTCACGAAGATGTCCCTCTCGGAACGGGAGGTGCGTTAGGATTAGTGAAAGATA
AACTACAGGATGACCTGCCGTTAATCGTGATCAATGGGGATGTATTAACCACAGTCAACTTTGAGCGACTTCTTGAGTTC
CATTTAATCAATCAAGCAGATGCGACAATGTGCGTGCGGGAATATGAGTATCAGGTGCCCTACGGCGTAATCACTACCAA
GGGAAAGAAAATCTCCGGAATGGTGGAAAAGCCTGTACAGCATTTCTTTGTAAATGCAGGGATCTATGTGGTATCCCCTG
CTGTATATAAATCCGTCGAACCAAACAGTCACATAGATATGCCAGCTTTACTTGAAAAACACATGCATGCACGTGACAGA
GTCTACACATTCCCTATCCATGAATATTGGCTGGATATTGGTCGAATGGATGAGTTCAACAAAGCACAATCTGACATAGA
AGTGTTAGGGATTAATTAA

Upstream 100 bases:

>100_bases
CTTGGATTTATCAAATCGAATGAGTCACTACTCCGAACATTTGCCCAAGAAGAGCAGCCTTTAAAATTCTATAAATTTAT
CAAAAACATCGGTGAACACC

Downstream 100 bases:

>100_bases
TGCTTAACGATAAACGTGTGCTGGCTCTCATACCTGCTCGAGGCGGCAGCAAACGCCTTCCGCGTAAAAATATTCGTCTA
CTTAAGGGTATTCCCCTTAT

Product: putative sugar-phosphate nucleotide transferase

Products: NA

Alternate protein names: ATP-mannose-1-phosphate guanylyltransferase; GDP-mannose pyrophosphorylase; NDP-hexose pyrophosphorylase [H]

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MTEKWKSVTLSATSTIREALEIINREALRVALVVDKDRNLVGVVTDGDIRRGLLKNLSLSDGIALVMNTNPTTAESGTPK
QDLVELMQRKGIISVPLLKNGKIVGLETLQSALTRPTYPNPVLIMAGGFGTRLKPLTDDCPKPMLKIGQRPILETLIMQM
VKCGFEHFYVSTHYMPEKIHSHFGDGKNFGANITYVHEDVPLGTGGALGLVKDKLQDDLPLIVINGDVLTTVNFERLLEF
HLINQADATMCVREYEYQVPYGVITTKGKKISGMVEKPVQHFFVNAGIYVVSPAVYKSVEPNSHIDMPALLEKHMHARDR
VYTFPIHEYWLDIGRMDEFNKAQSDIEVLGIN

Sequences:

>Translated_352_residues
MTEKWKSVTLSATSTIREALEIINREALRVALVVDKDRNLVGVVTDGDIRRGLLKNLSLSDGIALVMNTNPTTAESGTPK
QDLVELMQRKGIISVPLLKNGKIVGLETLQSALTRPTYPNPVLIMAGGFGTRLKPLTDDCPKPMLKIGQRPILETLIMQM
VKCGFEHFYVSTHYMPEKIHSHFGDGKNFGANITYVHEDVPLGTGGALGLVKDKLQDDLPLIVINGDVLTTVNFERLLEF
HLINQADATMCVREYEYQVPYGVITTKGKKISGMVEKPVQHFFVNAGIYVVSPAVYKSVEPNSHIDMPALLEKHMHARDR
VYTFPIHEYWLDIGRMDEFNKAQSDIEVLGIN
>Mature_351_residues
TEKWKSVTLSATSTIREALEIINREALRVALVVDKDRNLVGVVTDGDIRRGLLKNLSLSDGIALVMNTNPTTAESGTPKQ
DLVELMQRKGIISVPLLKNGKIVGLETLQSALTRPTYPNPVLIMAGGFGTRLKPLTDDCPKPMLKIGQRPILETLIMQMV
KCGFEHFYVSTHYMPEKIHSHFGDGKNFGANITYVHEDVPLGTGGALGLVKDKLQDDLPLIVINGDVLTTVNFERLLEFH
LINQADATMCVREYEYQVPYGVITTKGKKISGMVEKPVQHFFVNAGIYVVSPAVYKSVEPNSHIDMPALLEKHMHARDRV
YTFPIHEYWLDIGRMDEFNKAQSDIEVLGIN

Specific function: Not Known. [C]

COG id: COG1208

COG function: function code MJ; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Homo sapiens, GI11761621, Length=228, Percent_Identity=31.5789473684211, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI11761619, Length=228, Percent_Identity=31.5789473684211, Blast_Score=123, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI133931050, Length=228, Percent_Identity=29.3859649122807, Blast_Score=113, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6320148, Length=228, Percent_Identity=32.8947368421053, Blast_Score=118, Evalue=1e-27,
Organism=Drosophila melanogaster, GI21355443, Length=227, Percent_Identity=32.15859030837, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24644084, Length=227, Percent_Identity=32.15859030837, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24653912, Length=219, Percent_Identity=26.4840182648402, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005835 [H]

Pfam domain/function: PF00483 NTP_transferase [H]

EC number: =2.7.7.13 [H]

Molecular weight: Translated: 39254; Mature: 39123

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKWKSVTLSATSTIREALEIINREALRVALVVDKDRNLVGVVTDGDIRRGLLKNLSLS
CCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCHHHHHHHHCCCCC
DGIALVMNTNPTTAESGTPKQDLVELMQRKGIISVPLLKNGKIVGLETLQSALTRPTYPN
CCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCEEEHHHHHHHHCCCCCCC
PVLIMAGGFGTRLKPLTDDCPKPMLKIGQRPILETLIMQMVKCGFEHFYVSTHYMPEKIH
CEEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCHHHEEEEECCCHHHHH
SHFGDGKNFGANITYVHEDVPLGTGGALGLVKDKLQDDLPLIVINGDVLTTVNFERLLEF
HHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCEEEEECHHHHHHH
HLINQADATMCVREYEYQVPYGVITTKGKKISGMVEKPVQHFFVNAGIYVVSPAVYKSVE
HHCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECHHHHHCCC
PNSHIDMPALLEKHMHARDRVYTFPIHEYWLDIGRMDEFNKAQSDIEVLGIN
CCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCHHHHCCCCEEEEECC
>Mature Secondary Structure 
TEKWKSVTLSATSTIREALEIINREALRVALVVDKDRNLVGVVTDGDIRRGLLKNLSLS
CCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCHHHHHHHHCCCCC
DGIALVMNTNPTTAESGTPKQDLVELMQRKGIISVPLLKNGKIVGLETLQSALTRPTYPN
CCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCEEEHHHHHHHHCCCCCCC
PVLIMAGGFGTRLKPLTDDCPKPMLKIGQRPILETLIMQMVKCGFEHFYVSTHYMPEKIH
CEEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCHHHEEEEECCCHHHHH
SHFGDGKNFGANITYVHEDVPLGTGGALGLVKDKLQDDLPLIVINGDVLTTVNFERLLEF
HHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCEEEEECHHHHHHH
HLINQADATMCVREYEYQVPYGVITTKGKKISGMVEKPVQHFFVNAGIYVVSPAVYKSVE
HHCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECHHHHHCCC
PNSHIDMPALLEKHMHARDRVYTFPIHEYWLDIGRMDEFNKAQSDIEVLGIN
CCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8334170 [H]