| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775466
Identifier: 119775466
GI number: 119775466
Start: 2797037
End: 2798035
Strand: Direct
Name: 119775466
Synonym: Sama_2331
Alternate gene names: NA
Gene position: 2797037-2798035 (Clockwise)
Preceding gene: 119775465
Following gene: 119775467
Centisome position: 64.95
GC content: 45.85
Gene sequence:
>999_bases ATGGTTAAGACTTTTATCATCGCCGAAGCGGGCGTAAATCATAATGGCAATATTGCTCTGGCAAAGCAGCTAATTGACTC TGCAGTGGAAGCCGGCGTTGATGCAGTAAAGTTCCAGACTTGGAAAACCGAATTGCTTGTCAGCAAAGATGCTGAAATGG CTGCATATCAGATTGAAAACACACACAAAAAAGAGTCTCAATTTGAAATGCTCAAGAGACTTGAGCTGAGTTATCCCGAC TTTATCGAGTTAAAGGCGTACTGTGATACTAAAAATATCTTGTTCCTTTCAACCCCAGACGAGCATGAAAGCGCTCGTTT TTTAAACGGATTACAGAGTGTCTTTAAAATTGGATCCGGTGAACTGACCAACGTTCCATTCCTCAGGTTAATTGCAGGTT TTGGTAAACCTGTGATCCTATCGACTGGCATGGGATACCTTTCAGAAGTGGAACAAGCACTGTTTGTGCTAACAGAAGCA GGACTGGCACTAACGGATATAACGGTTTTACATGCAACCACCGACTACCCCACGGCGCCACAGGACGTAAACTTACGTGC CATGCTGACTATTCAAAATGCGTTTCCCGGAGTTAAGGTCGGTTATTCCGACCATACTTTGGGGATTGAAGTATCTGTCG CGGCAGTCGCCTTGGGTGCAAGTATCATTGAAAAACATTTTACGCTGGATAAAGCAATGCCGGGCCCCGATCACAAAGCG AGCCTTGAACCTGCTGAACTGAAAGCGTTGGTGCAAGCCATTCGAAATGTCGAAGCATCCCTTGGGGATGGCCGAAAGCT CCCCACGTCAACTGAAATGGTTAATCGAAAGCTCGTCAGAAAAAGTATCATCGCAAATACTTATATCAGCGCGGGCACAG AGATAACCGCCGATATGTTGGATGTCAGACGTCCGGGAGATGGAATTTCCCCTTCTCGCTGGGATGAGGTAATCGGCAGT ATCGCCAAAAAGGACTATCAATCAGGAGACCTCATTTAA
Upstream 100 bases:
>100_bases CCCGAAAAGCGTATAGAACTGAACAAACTTTGGTGCGAATTGAGTACCACAGCAGAGATACCGGCAAGATTTCAGCTTTA TAGAGCTTTGGAGCCCAATC
Downstream 100 bases:
>100_bases TGCGGAAGATTTCCGTTGTGACAGCAACCCGAGCAGAATATGGATTGTTGAGAGGATTACTCGAGGACATCAATGCAGCA TCGGAGCTGGAATTACAGCT
Product: N-acylneuraminate-9-phosphate synthase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 332
Protein sequence:
>332_residues MVKTFIIAEAGVNHNGNIALAKQLIDSAVEAGVDAVKFQTWKTELLVSKDAEMAAYQIENTHKKESQFEMLKRLELSYPD FIELKAYCDTKNILFLSTPDEHESARFLNGLQSVFKIGSGELTNVPFLRLIAGFGKPVILSTGMGYLSEVEQALFVLTEA GLALTDITVLHATTDYPTAPQDVNLRAMLTIQNAFPGVKVGYSDHTLGIEVSVAAVALGASIIEKHFTLDKAMPGPDHKA SLEPAELKALVQAIRNVEASLGDGRKLPTSTEMVNRKLVRKSIIANTYISAGTEITADMLDVRRPGDGISPSRWDEVIGS IAKKDYQSGDLI
Sequences:
>Translated_332_residues MVKTFIIAEAGVNHNGNIALAKQLIDSAVEAGVDAVKFQTWKTELLVSKDAEMAAYQIENTHKKESQFEMLKRLELSYPD FIELKAYCDTKNILFLSTPDEHESARFLNGLQSVFKIGSGELTNVPFLRLIAGFGKPVILSTGMGYLSEVEQALFVLTEA GLALTDITVLHATTDYPTAPQDVNLRAMLTIQNAFPGVKVGYSDHTLGIEVSVAAVALGASIIEKHFTLDKAMPGPDHKA SLEPAELKALVQAIRNVEASLGDGRKLPTSTEMVNRKLVRKSIIANTYISAGTEITADMLDVRRPGDGISPSRWDEVIGS IAKKDYQSGDLI >Mature_332_residues MVKTFIIAEAGVNHNGNIALAKQLIDSAVEAGVDAVKFQTWKTELLVSKDAEMAAYQIENTHKKESQFEMLKRLELSYPD FIELKAYCDTKNILFLSTPDEHESARFLNGLQSVFKIGSGELTNVPFLRLIAGFGKPVILSTGMGYLSEVEQALFVLTEA GLALTDITVLHATTDYPTAPQDVNLRAMLTIQNAFPGVKVGYSDHTLGIEVSVAAVALGASIIEKHFTLDKAMPGPDHKA SLEPAELKALVQAIRNVEASLGDGRKLPTSTEMVNRKLVRKSIIANTYISAGTEITADMLDVRRPGDGISPSRWDEVIGS IAKKDYQSGDLI
Specific function: Unknown
COG id: COG2089
COG function: function code M; Sialic acid synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis spsE [H]
Homologues:
Organism=Homo sapiens, GI12056473, Length=301, Percent_Identity=38.2059800664452, Blast_Score=206, Evalue=2e-53, Organism=Drosophila melanogaster, GI21357081, Length=257, Percent_Identity=39.2996108949416, Blast_Score=182, Evalue=3e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006190 - InterPro: IPR013785 - InterPro: IPR013132 - InterPro: IPR013974 [H]
Pfam domain/function: PF03102 NeuB; PF08666 SAF [H]
EC number: NA
Molecular weight: Translated: 36107; Mature: 36107
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS50844 AFP_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKTFIIAEAGVNHNGNIALAKQLIDSAVEAGVDAVKFQTWKTELLVSKDAEMAAYQIEN CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHEEEEHHHHEEEEECCCHHHHHHHHC THKKESQFEMLKRLELSYPDFIELKAYCDTKNILFLSTPDEHESARFLNGLQSVFKIGSG CCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC ELTNVPFLRLIAGFGKPVILSTGMGYLSEVEQALFVLTEAGLALTDITVLHATTDYPTAP CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCC QDVNLRAMLTIQNAFPGVKVGYSDHTLGIEVSVAAVALGASIIEKHFTLDKAMPGPDHKA CCCCEEEEEEEECCCCCCEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCC SLEPAELKALVQAIRNVEASLGDGRKLPTSTEMVNRKLVRKSIIANTYISAGTEITADML CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH DVRRPGDGISPSRWDEVIGSIAKKDYQSGDLI HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MVKTFIIAEAGVNHNGNIALAKQLIDSAVEAGVDAVKFQTWKTELLVSKDAEMAAYQIEN CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHEEEEHHHHEEEEECCCHHHHHHHHC THKKESQFEMLKRLELSYPDFIELKAYCDTKNILFLSTPDEHESARFLNGLQSVFKIGSG CCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC ELTNVPFLRLIAGFGKPVILSTGMGYLSEVEQALFVLTEAGLALTDITVLHATTDYPTAP CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCC QDVNLRAMLTIQNAFPGVKVGYSDHTLGIEVSVAAVALGASIIEKHFTLDKAMPGPDHKA CCCCEEEEEEEECCCCCCEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCC SLEPAELKALVQAIRNVEASLGDGRKLPTSTEMVNRKLVRKSIIANTYISAGTEITADML CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH DVRRPGDGISPSRWDEVIGSIAKKDYQSGDLI HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]