| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775463
Identifier: 119775463
GI number: 119775463
Start: 2793695
End: 2794876
Strand: Direct
Name: 119775463
Synonym: Sama_2328
Alternate gene names: NA
Gene position: 2793695-2794876 (Clockwise)
Preceding gene: 119775461
Following gene: 119775464
Centisome position: 64.88
GC content: 45.69
Gene sequence:
>1182_bases ATGCTTGAACTCATCGGACGACAAACCGAACTTTTTGAAGCCGATCTCAATGTACTGTCAGAGCAACTGTCAGCCAGAGT ATCGGAAGCGTCCTTTCTTGTATTGGGTGGTGCCGGTTCAATTGGACAGGCAGTCGTCAAAGAAATATTCAATCGCCAAC CGAAAAAGCTACATGTAATTGATATTTCGGAGAATAACCTGGCAGAACTTGTCAGGGATCTTCGCAGTTCCTATGGTTAT ATTCAGGGAGACTTCCAAACGTTTGCCTTGGATATAGGTTCTCTGGAATACGATGCATTCATCAGACATGACGGTAAGTA CGATTATGTCCTTAATTTGTCAGCACTGAAGCATGTTCGCAGTGAGAAGGACCCCTTCACCCTGATGCGGATGATAGATG TAAACGTGTTTAACACCGACAAAACCATCAAGCAATCAATCGCATCAGGTGTAAAAAAGTACTTTTGTGTATCCACTGAC AAAGCAGCAAATCCGGTAAATATGATGGGCGCATCCAAGCGCATCATGGAGATGTTTTTGATGCGCCACAGTGAGCAAAT CACGATTTCCACTGCACGCTTTGCTAATGTGGCATTCTCAGACGGCTCGCTGTTGCATAGCTTCAATCAAAGACTACAGA AGCAGCAGCCCCTGGTGGCTCCCAATGACATCAAGCGTTATTTTGTGACCCCAAAAGAAGCGGGCTTACTCTGCCTCATG TCATGTATCTTAGGAGAGAATCGCGATATCTTTTTCCCGAAGTTAAATGAAGCGCTGCATCTGATGACCTTCGCAGATAT TGCGGTTAAATACCTTTCAGCAAGGGGGTTTGAGCCGTTTGAATGTCAAAGCGAAGACGAGGCAAGGCAGTTGGCGGCAA CCTTGCCAGCACAGGGGAAATGGCCATGCTTTTTCACTGCCAGCGACACAACCGGTGAAAAAGATTTTGAAGAATTCTTT ATGGCGCATGAAACTTTGGATATCACGCGTTTCCAGGACTTGGGGATCATCAAAAACGATGCTGTTTACCAGCCCGAATT ACTGGACGAATTTGAAATACAGATCGAGCGAATGAAATCTGCCGGGCAATGGAGTAAGGCTGAACTGGTCGAAGTGTTCA CCAGGATGATACCTGACTTTGGACACAAGGAAACCGGTAAGTACCTTGACAGTAAGATGTGA
Upstream 100 bases:
>100_bases ATGCATTTTCCCACAGGACTATCATCTCTCCGCCCTTGTAATATTCCATCTGTTTATATTACATTTATCAATGGGTTATT AACTTTTCCAAGGACACCCT
Downstream 100 bases:
>100_bases GACCAACGACATGAAGCCTGAAACGCTCGTTGAGTTTGTACGAGACATATACCAAAGCAATGAGCAAATCCCTTTGCATG TGCCGAGCTTCGACGGCAAT
Product: UDP-N-acetylglucosamine 4,6-dehydratase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MLELIGRQTELFEADLNVLSEQLSARVSEASFLVLGGAGSIGQAVVKEIFNRQPKKLHVIDISENNLAELVRDLRSSYGY IQGDFQTFALDIGSLEYDAFIRHDGKYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIKQSIASGVKKYFCVSTD KAANPVNMMGASKRIMEMFLMRHSEQITISTARFANVAFSDGSLLHSFNQRLQKQQPLVAPNDIKRYFVTPKEAGLLCLM SCILGENRDIFFPKLNEALHLMTFADIAVKYLSARGFEPFECQSEDEARQLAATLPAQGKWPCFFTASDTTGEKDFEEFF MAHETLDITRFQDLGIIKNDAVYQPELLDEFEIQIERMKSAGQWSKAELVEVFTRMIPDFGHKETGKYLDSKM
Sequences:
>Translated_393_residues MLELIGRQTELFEADLNVLSEQLSARVSEASFLVLGGAGSIGQAVVKEIFNRQPKKLHVIDISENNLAELVRDLRSSYGY IQGDFQTFALDIGSLEYDAFIRHDGKYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIKQSIASGVKKYFCVSTD KAANPVNMMGASKRIMEMFLMRHSEQITISTARFANVAFSDGSLLHSFNQRLQKQQPLVAPNDIKRYFVTPKEAGLLCLM SCILGENRDIFFPKLNEALHLMTFADIAVKYLSARGFEPFECQSEDEARQLAATLPAQGKWPCFFTASDTTGEKDFEEFF MAHETLDITRFQDLGIIKNDAVYQPELLDEFEIQIERMKSAGQWSKAELVEVFTRMIPDFGHKETGKYLDSKM >Mature_393_residues MLELIGRQTELFEADLNVLSEQLSARVSEASFLVLGGAGSIGQAVVKEIFNRQPKKLHVIDISENNLAELVRDLRSSYGY IQGDFQTFALDIGSLEYDAFIRHDGKYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIKQSIASGVKKYFCVSTD KAANPVNMMGASKRIMEMFLMRHSEQITISTARFANVAFSDGSLLHSFNQRLQKQQPLVAPNDIKRYFVTPKEAGLLCLM SCILGENRDIFFPKLNEALHLMTFADIAVKYLSARGFEPFECQSEDEARQLAATLPAQGKWPCFFTASDTTGEKDFEEFF MAHETLDITRFQDLGIIKNDAVYQPELLDEFEIQIERMKSAGQWSKAELVEVFTRMIPDFGHKETGKYLDSKM
Specific function: Unknown
COG id: COG1086
COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR003869 [H]
Pfam domain/function: PF02719 Polysacc_synt_2 [H]
EC number: NA
Molecular weight: Translated: 44611; Mature: 44611
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLELIGRQTELFEADLNVLSEQLSARVSEASFLVLGGAGSIGQAVVKEIFNRQPKKLHVI CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEE DISENNLAELVRDLRSSYGYIQGDFQTFALDIGSLEYDAFIRHDGKYDYVLNLSALKHVR ECCCCCHHHHHHHHHHHCCEEEECCEEEEEECCCEEEEHHEEECCCEEEEEEHHHHHHHH SEKDPFTLMRMIDVNVFNTDKTIKQSIASGVKKYFCVSTDKAANPVNMMGASKRIMEMFL CCCCHHHHHHHHCCEEECCCHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHH MRHSEQITISTARFANVAFSDGSLLHSFNQRLQKQQPLVAPNDIKRYFVTPKEAGLLCLM HHCCCEEEEEEHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHH SCILGENRDIFFPKLNEALHLMTFADIAVKYLSARGFEPFECQSEDEARQLAATLPAQGK HHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC WPCFFTASDTTGEKDFEEFFMAHETLDITRFQDLGIIKNDAVYQPELLDEFEIQIERMKS CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC AGQWSKAELVEVFTRMIPDFGHKETGKYLDSKM CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCC >Mature Secondary Structure MLELIGRQTELFEADLNVLSEQLSARVSEASFLVLGGAGSIGQAVVKEIFNRQPKKLHVI CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEE DISENNLAELVRDLRSSYGYIQGDFQTFALDIGSLEYDAFIRHDGKYDYVLNLSALKHVR ECCCCCHHHHHHHHHHHCCEEEECCEEEEEECCCEEEEHHEEECCCEEEEEEHHHHHHHH SEKDPFTLMRMIDVNVFNTDKTIKQSIASGVKKYFCVSTDKAANPVNMMGASKRIMEMFL CCCCHHHHHHHHCCEEECCCHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHH MRHSEQITISTARFANVAFSDGSLLHSFNQRLQKQQPLVAPNDIKRYFVTPKEAGLLCLM HHCCCEEEEEEHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHH SCILGENRDIFFPKLNEALHLMTFADIAVKYLSARGFEPFECQSEDEARQLAATLPAQGK HHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC WPCFFTASDTTGEKDFEEFFMAHETLDITRFQDLGIIKNDAVYQPELLDEFEIQIERMKS CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC AGQWSKAELVEVFTRMIPDFGHKETGKYLDSKM CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]