Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775463

Identifier: 119775463

GI number: 119775463

Start: 2793695

End: 2794876

Strand: Direct

Name: 119775463

Synonym: Sama_2328

Alternate gene names: NA

Gene position: 2793695-2794876 (Clockwise)

Preceding gene: 119775461

Following gene: 119775464

Centisome position: 64.88

GC content: 45.69

Gene sequence:

>1182_bases
ATGCTTGAACTCATCGGACGACAAACCGAACTTTTTGAAGCCGATCTCAATGTACTGTCAGAGCAACTGTCAGCCAGAGT
ATCGGAAGCGTCCTTTCTTGTATTGGGTGGTGCCGGTTCAATTGGACAGGCAGTCGTCAAAGAAATATTCAATCGCCAAC
CGAAAAAGCTACATGTAATTGATATTTCGGAGAATAACCTGGCAGAACTTGTCAGGGATCTTCGCAGTTCCTATGGTTAT
ATTCAGGGAGACTTCCAAACGTTTGCCTTGGATATAGGTTCTCTGGAATACGATGCATTCATCAGACATGACGGTAAGTA
CGATTATGTCCTTAATTTGTCAGCACTGAAGCATGTTCGCAGTGAGAAGGACCCCTTCACCCTGATGCGGATGATAGATG
TAAACGTGTTTAACACCGACAAAACCATCAAGCAATCAATCGCATCAGGTGTAAAAAAGTACTTTTGTGTATCCACTGAC
AAAGCAGCAAATCCGGTAAATATGATGGGCGCATCCAAGCGCATCATGGAGATGTTTTTGATGCGCCACAGTGAGCAAAT
CACGATTTCCACTGCACGCTTTGCTAATGTGGCATTCTCAGACGGCTCGCTGTTGCATAGCTTCAATCAAAGACTACAGA
AGCAGCAGCCCCTGGTGGCTCCCAATGACATCAAGCGTTATTTTGTGACCCCAAAAGAAGCGGGCTTACTCTGCCTCATG
TCATGTATCTTAGGAGAGAATCGCGATATCTTTTTCCCGAAGTTAAATGAAGCGCTGCATCTGATGACCTTCGCAGATAT
TGCGGTTAAATACCTTTCAGCAAGGGGGTTTGAGCCGTTTGAATGTCAAAGCGAAGACGAGGCAAGGCAGTTGGCGGCAA
CCTTGCCAGCACAGGGGAAATGGCCATGCTTTTTCACTGCCAGCGACACAACCGGTGAAAAAGATTTTGAAGAATTCTTT
ATGGCGCATGAAACTTTGGATATCACGCGTTTCCAGGACTTGGGGATCATCAAAAACGATGCTGTTTACCAGCCCGAATT
ACTGGACGAATTTGAAATACAGATCGAGCGAATGAAATCTGCCGGGCAATGGAGTAAGGCTGAACTGGTCGAAGTGTTCA
CCAGGATGATACCTGACTTTGGACACAAGGAAACCGGTAAGTACCTTGACAGTAAGATGTGA

Upstream 100 bases:

>100_bases
ATGCATTTTCCCACAGGACTATCATCTCTCCGCCCTTGTAATATTCCATCTGTTTATATTACATTTATCAATGGGTTATT
AACTTTTCCAAGGACACCCT

Downstream 100 bases:

>100_bases
GACCAACGACATGAAGCCTGAAACGCTCGTTGAGTTTGTACGAGACATATACCAAAGCAATGAGCAAATCCCTTTGCATG
TGCCGAGCTTCGACGGCAAT

Product: UDP-N-acetylglucosamine 4,6-dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MLELIGRQTELFEADLNVLSEQLSARVSEASFLVLGGAGSIGQAVVKEIFNRQPKKLHVIDISENNLAELVRDLRSSYGY
IQGDFQTFALDIGSLEYDAFIRHDGKYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIKQSIASGVKKYFCVSTD
KAANPVNMMGASKRIMEMFLMRHSEQITISTARFANVAFSDGSLLHSFNQRLQKQQPLVAPNDIKRYFVTPKEAGLLCLM
SCILGENRDIFFPKLNEALHLMTFADIAVKYLSARGFEPFECQSEDEARQLAATLPAQGKWPCFFTASDTTGEKDFEEFF
MAHETLDITRFQDLGIIKNDAVYQPELLDEFEIQIERMKSAGQWSKAELVEVFTRMIPDFGHKETGKYLDSKM

Sequences:

>Translated_393_residues
MLELIGRQTELFEADLNVLSEQLSARVSEASFLVLGGAGSIGQAVVKEIFNRQPKKLHVIDISENNLAELVRDLRSSYGY
IQGDFQTFALDIGSLEYDAFIRHDGKYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIKQSIASGVKKYFCVSTD
KAANPVNMMGASKRIMEMFLMRHSEQITISTARFANVAFSDGSLLHSFNQRLQKQQPLVAPNDIKRYFVTPKEAGLLCLM
SCILGENRDIFFPKLNEALHLMTFADIAVKYLSARGFEPFECQSEDEARQLAATLPAQGKWPCFFTASDTTGEKDFEEFF
MAHETLDITRFQDLGIIKNDAVYQPELLDEFEIQIERMKSAGQWSKAELVEVFTRMIPDFGHKETGKYLDSKM
>Mature_393_residues
MLELIGRQTELFEADLNVLSEQLSARVSEASFLVLGGAGSIGQAVVKEIFNRQPKKLHVIDISENNLAELVRDLRSSYGY
IQGDFQTFALDIGSLEYDAFIRHDGKYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIKQSIASGVKKYFCVSTD
KAANPVNMMGASKRIMEMFLMRHSEQITISTARFANVAFSDGSLLHSFNQRLQKQQPLVAPNDIKRYFVTPKEAGLLCLM
SCILGENRDIFFPKLNEALHLMTFADIAVKYLSARGFEPFECQSEDEARQLAATLPAQGKWPCFFTASDTTGEKDFEEFF
MAHETLDITRFQDLGIIKNDAVYQPELLDEFEIQIERMKSAGQWSKAELVEVFTRMIPDFGHKETGKYLDSKM

Specific function: Unknown

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 44611; Mature: 44611

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELIGRQTELFEADLNVLSEQLSARVSEASFLVLGGAGSIGQAVVKEIFNRQPKKLHVI
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEE
DISENNLAELVRDLRSSYGYIQGDFQTFALDIGSLEYDAFIRHDGKYDYVLNLSALKHVR
ECCCCCHHHHHHHHHHHCCEEEECCEEEEEECCCEEEEHHEEECCCEEEEEEHHHHHHHH
SEKDPFTLMRMIDVNVFNTDKTIKQSIASGVKKYFCVSTDKAANPVNMMGASKRIMEMFL
CCCCHHHHHHHHCCEEECCCHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHH
MRHSEQITISTARFANVAFSDGSLLHSFNQRLQKQQPLVAPNDIKRYFVTPKEAGLLCLM
HHCCCEEEEEEHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHH
SCILGENRDIFFPKLNEALHLMTFADIAVKYLSARGFEPFECQSEDEARQLAATLPAQGK
HHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
WPCFFTASDTTGEKDFEEFFMAHETLDITRFQDLGIIKNDAVYQPELLDEFEIQIERMKS
CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
AGQWSKAELVEVFTRMIPDFGHKETGKYLDSKM
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MLELIGRQTELFEADLNVLSEQLSARVSEASFLVLGGAGSIGQAVVKEIFNRQPKKLHVI
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEE
DISENNLAELVRDLRSSYGYIQGDFQTFALDIGSLEYDAFIRHDGKYDYVLNLSALKHVR
ECCCCCHHHHHHHHHHHCCEEEECCEEEEEECCCEEEEHHEEECCCEEEEEEHHHHHHHH
SEKDPFTLMRMIDVNVFNTDKTIKQSIASGVKKYFCVSTDKAANPVNMMGASKRIMEMFL
CCCCHHHHHHHHCCEEECCCHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHH
MRHSEQITISTARFANVAFSDGSLLHSFNQRLQKQQPLVAPNDIKRYFVTPKEAGLLCLM
HHCCCEEEEEEHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHH
SCILGENRDIFFPKLNEALHLMTFADIAVKYLSARGFEPFECQSEDEARQLAATLPAQGK
HHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
WPCFFTASDTTGEKDFEEFFMAHETLDITRFQDLGIIKNDAVYQPELLDEFEIQIERMKS
CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
AGQWSKAELVEVFTRMIPDFGHKETGKYLDSKM
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]