| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775406
Identifier: 119775406
GI number: 119775406
Start: 2737932
End: 2738336
Strand: Reverse
Name: 119775406
Synonym: Sama_2271
Alternate gene names: NA
Gene position: 2738336-2737932 (Counterclockwise)
Preceding gene: 119775407
Following gene: 119775403
Centisome position: 63.59
GC content: 55.56
Gene sequence:
>405_bases ATGGTTGAAAATGGGTTTCTAATCGCAGCCTTGGTGTACGTTGTCGCGTGTTTGGCGCTGGTGCTATACCTGCAAAAGCA GCTCGGGAAGCTTCGCACCAAGGTGGATGCGCTGTCGTTGCTGCTTAAAGAGGCCGATAAGCAGCGTGAGGGTTTCAAGC GGGAATTGCATGAGCTCAGAAGTGGCACCATAGGCGTGGGTAAGCGGGTGCTCGAGTTGGAAAAGCGCTTGGTGGCACAG GATGCTAGAATCGATGAAACCCGCGAGCAAGACCCACAGGCCAGGCTTTATACCCGGGCGATGAAAATGGTCTCGCTCGG TGCCGGTATTGAAGAGCTGATGCATGAGTGCGAGCTGCCAAGGGCCGAAGCAGAGTTGTTGCTGCGTCTTCACCGCAAGG GGTAG
Upstream 100 bases:
>100_bases TGAAGAATGGGCAGAGCTTGCTCAGATTTAATGAGATACCAAGCCACAGGCCGCCAATGGCGGCCTGTGGCGTATCTGAC TCAGGGAGTGGTATTGCTGC
Downstream 100 bases:
>100_bases TCAGTCGCTGTTGCGAATCCTTGAGATGGGTTTTAAGACAGGACGATAGCAACTATCACCCTGTCTTTGATGTAGTAGAA AAAAAGCTGCCGTCGGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MVENGFLIAALVYVVACLALVLYLQKQLGKLRTKVDALSLLLKEADKQREGFKRELHELRSGTIGVGKRVLELEKRLVAQ DARIDETREQDPQARLYTRAMKMVSLGAGIEELMHECELPRAEAELLLRLHRKG
Sequences:
>Translated_134_residues MVENGFLIAALVYVVACLALVLYLQKQLGKLRTKVDALSLLLKEADKQREGFKRELHELRSGTIGVGKRVLELEKRLVAQ DARIDETREQDPQARLYTRAMKMVSLGAGIEELMHECELPRAEAELLLRLHRKG >Mature_134_residues MVENGFLIAALVYVVACLALVLYLQKQLGKLRTKVDALSLLLKEADKQREGFKRELHELRSGTIGVGKRVLELEKRLVAQ DARIDETREQDPQARLYTRAMKMVSLGAGIEELMHECELPRAEAELLLRLHRKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15222; Mature: 15222
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVENGFLIAALVYVVACLALVLYLQKQLGKLRTKVDALSLLLKEADKQREGFKRELHELR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SGTIGVGKRVLELEKRLVAQDARIDETREQDPQARLYTRAMKMVSLGAGIEELMHECELP CCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCC RAEAELLLRLHRKG HHHHHHHHHHHHCC >Mature Secondary Structure MVENGFLIAALVYVVACLALVLYLQKQLGKLRTKVDALSLLLKEADKQREGFKRELHELR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SGTIGVGKRVLELEKRLVAQDARIDETREQDPQARLYTRAMKMVSLGAGIEELMHECELP CCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCC RAEAELLLRLHRKG HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA