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The map label for this gene is rfaH [H]

Identifier: 119775400

GI number: 119775400

Start: 2730693

End: 2731196

Strand: Reverse

Name: rfaH [H]

Synonym: Sama_2265

Alternate gene names: 119775400

Gene position: 2731196-2730693 (Counterclockwise)

Preceding gene: 119775402

Following gene: 119775399

Centisome position: 63.43

GC content: 48.41

Gene sequence:

>504_bases
ATGAAGGCTTGGTATCTCATTTACTGTAAGCCCCGCAACGAAATGCGGGCACAGCAGAATCTCTCCATGCAGAACCTCGA
AACTTACCTGCCAAAGCATCGTAAGCAGGTAAAAGCGAGTGGAGGAGCTGTATCTGTCTCTGAATCAGTGCTGTTTCCAA
ATTATTTATTTGTTCAGTTTGATCCCGAAGTCACCAGCGTAAGAAGCATACACGCAACACGTGGTGTGTCTCGCATTGTC
GGATGCAGCGAACAAATGACTCCCATCGATGATGCGTTAATTCGTGCCCTCAAGCGTAAAGAATTGCAGGTTGAAAAGCT
TGCCTGTGAAAAGCCATTGGCAGCGGGCGAGCGGGTAAAGTTTTGTGCCGGCCCCTTTTCTGACCTGGAAGCCATTTTCC
TCGAATCGGATGGTAACAAGCGCTGTCAGGTGCTGTTTGAGTTTATGGGGCAGCAAAAGCAGCTCGACGTTGAGTCTTCA
AGTATCGTTCGTATATGTGCGTGA

Upstream 100 bases:

>100_bases
TAACAATCAAAGCTACAAATAATCGTTCAAATTGGCGCACGATTAGGGTAAGCTTCTTGGCCGTGAATAGGACGTCACCC
AACCGTAATAGAGACATTAG

Downstream 100 bases:

>100_bases
TCCCCCTCAAAGGTTGTAAGATTTTTGCCATAGAGTGACTGTTGTACTCTGTGGTGGAGTCATTTTGTTGACTGATAAAT
ATGTTTTAAAGCAGCGATTT

Product: transcriptional activator rfaH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MKAWYLIYCKPRNEMRAQQNLSMQNLETYLPKHRKQVKASGGAVSVSESVLFPNYLFVQFDPEVTSVRSIHATRGVSRIV
GCSEQMTPIDDALIRALKRKELQVEKLACEKPLAAGERVKFCAGPFSDLEAIFLESDGNKRCQVLFEFMGQQKQLDVESS
SIVRICA

Sequences:

>Translated_167_residues
MKAWYLIYCKPRNEMRAQQNLSMQNLETYLPKHRKQVKASGGAVSVSESVLFPNYLFVQFDPEVTSVRSIHATRGVSRIV
GCSEQMTPIDDALIRALKRKELQVEKLACEKPLAAGERVKFCAGPFSDLEAIFLESDGNKRCQVLFEFMGQQKQLDVESS
SIVRICA
>Mature_167_residues
MKAWYLIYCKPRNEMRAQQNLSMQNLETYLPKHRKQVKASGGAVSVSESVLFPNYLFVQFDPEVTSVRSIHATRGVSRIV
GCSEQMTPIDDALIRALKRKELQVEKLACEKPLAAGERVKFCAGPFSDLEAIFLESDGNKRCQVLFEFMGQQKQLDVESS
SIVRICA

Specific function: Transcriptional activator of hemolysin synthesis and secretion, also required for expression of sex factor and lipopolysaccharide biosynthesis genes. Transcriptional activator of rfaD/htrM and htrL [H]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790276, Length=163, Percent_Identity=36.8098159509202, Blast_Score=94, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR010215
- InterPro:   IPR006645
- InterPro:   IPR014722 [H]

Pfam domain/function: PF02357 NusG [H]

EC number: NA

Molecular weight: Translated: 18863; Mature: 18863

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAWYLIYCKPRNEMRAQQNLSMQNLETYLPKHRKQVKASGGAVSVSESVLFPNYLFVQF
CCEEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCEEEEEE
DPEVTSVRSIHATRGVSRIVGCSEQMTPIDDALIRALKRKELQVEKLACEKPLAAGERVK
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
FCAGPFSDLEAIFLESDGNKRCQVLFEFMGQQKQLDVESSSIVRICA
EECCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MKAWYLIYCKPRNEMRAQQNLSMQNLETYLPKHRKQVKASGGAVSVSESVLFPNYLFVQF
CCEEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCEEEEEE
DPEVTSVRSIHATRGVSRIVGCSEQMTPIDDALIRALKRKELQVEKLACEKPLAAGERVK
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
FCAGPFSDLEAIFLESDGNKRCQVLFEFMGQQKQLDVESSSIVRICA
EECCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]