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The map label for this gene is kpsD [H]

Identifier: 119775399

GI number: 119775399

Start: 2727592

End: 2730075

Strand: Reverse

Name: kpsD [H]

Synonym: Sama_2264

Alternate gene names: 119775399

Gene position: 2730075-2727592 (Counterclockwise)

Preceding gene: 119775400

Following gene: 119775398

Centisome position: 63.4

GC content: 51.77

Gene sequence:

>2484_bases
GTGTTACAACAACTAAAACGATTCTTGATTGCCGGTGTGGGAGCACTGGTTTTGGTTGGGGGCCCTGTTGCAGCAATTAC
GCCGTCGCCGCAAATGATTGAACAATTTAAAAATCTGCCCAAAGCGGAGCAGGAGCGTATTGCACGGCAATATGGCATAG
ACCCGAGTATGCTTTCCGGCCAAGCCACCCAACCGACAATCGTTAATCCTGAAGTTGTAGCACCGCGAAATACAGGTTCA
ACGACCGAAGTCGTTAACCAAAGCGAGACTGACGCATTTAATCAGGCCACAAAAACCGAATCTCAGATAGAGGCCCGTGA
AGAAGAACTGGAGAAGCAGCTCAAGCGCTTCGGATACGACATGTTTGCCGGTGAGCCTTCTACCTTTGCCCCCGTGTCTG
ACGTACCCGTACCAGCCGAATACATGATGGGTCCGGGTGATGTACTAAATGTGCAGCTTTACGGCAAAGAGAATAAGAAT
TTCAGCCTTACTGTTGGCCGCGATGGCTTGGTGCAATTCCCCGATTTGGGCCCCATCTCCCTGGTGGGGATGAGCTTCTC
TGAAGCCAAAAATTTCCTCACTGATAAAATCGCACAATCCATGATTGGTATTCAGGCCAATATCACCATGGGTGAGCTGC
GCTCCATCCGCATTTTTGTGGCCGGTGATGCCTATCGCCCCGGCTCCTATACCGTCTCCAGCCTCTCTACCATCACTCAG
GCACTGTTTGTATCTGGTGGCATCAACGAAATTGGCTCTTTGCGTAACATTCAGCTCAAGCGTGCTGGCCGCACCGTGGG
TACCTTCGATTTATACGACTTGTTGCTCGCCGGAGATGCCTCAAAAGATTTGCGCCTGCAATCAGGTGATGTGGTGTTTA
TTCCTTCAGTTGGTGGCCTGGTCAGTGTAACAGGAGAGGTTCGCCGCCCAGCTATATATGAAATCAAAGCCAATGACACC
ATGGCCGACGTACTTAACATGGCCAGTGGTGCCAAACCGGGCGCCTATCCAGAAGCCAGTACCATTGAGCGTTTCAGCAA
AGATGTAAAAACCGTAATTAATGTGGATTTAACTCAGGCTTCAGGCCTCAGTGTTAAGGCCAAAGCGGGAGATTTGGTGA
GAGTAAAATCCACCTCTACCCGTATTGATAATGCTGTAACCCTGGTGGGGGCAGTTGTTCGTCCGGGTAAATATCAGTAC
CGCAATGGCATGCGCCTTCGCGATATGTTGCCGTCAATCTGGGGTGATTTAACCCTGAATGCCGACTTGGATTACGGCCT
GCTGGTACGTGAAATTAACCAGCGTGGTGATGTAAAGGTGATTCAGGTTTCTGTGGGCAAAGCCATTAGCGGTGATGACA
GTGCCAATATCGCCCTGCAGCCGAGAGACACCCTGATGGTATTTGATTATGCCGACAGAGCCACACTGCTCGAGCCTGTG
ATTACCCAACTGCGCCAGCAAAGCCGCTTTGGAGATGCGATAAAGCTCGCCGATATTAACGGCAGTGTGCGTTTCCCCGG
TAAGTACCCGATTACAGAAGGCGCCACCATTAAAGATTTGCTGGTCGCTGCTGGTGGCCTGAAGGAGGGGGCTTATACGC
TTTCTGCTGAACTTACCCGCCAGAATATCTCCGAGCAAACCGGCGTTACCGTAACCCATCAACAGCTGAGTTTGCAGGAC
GTATTATTGAATGACCCATCCGCCAATATCGCTCTGCAAAGTCGTGATGTGTTAACTGTGCGCGATTTGCCCGACTGGCA
AGACACCCGTTGGGTAACCATAAAAGGTGAAGTGCGGTTCCCGGGTACCTACAGTATTCAACGTGGTGAAACTCTTAAGC
ACGTGCTCAGCCGTGCAGGCGGTCTGAGTGAGGATGCTGCGCCACGCAGTGCCGTGTTCTTGCGCGAATCGGTAAAGCAA
AAAGAAAAGACCGAGCTGCTGAAGTTATCCGACGAGCTGCGCCGTGAAATTGCTGCCAAGGCGCTCACCAAGGATACCCC
CACAGTGGGCTACGCCGATGCCCAAAACATGCTCAAAGAGCTTGAAAATGTAGAGGTACTGGGTCGTTTGGTGGTGGATA
TCAACGCCATTCAACTCGGTATCGATGAGGCCGACCTTAAGCTTGAAGACGGCGATGCCTTGTTTATCCCGGCGCAAAAT
CAAACCGTATCTGTAATGGGGCAGGTACAGCACCCCAGCACCCACAGATACAAAAAGGGCTTTACCTTCGACCAGTATCT
TGAGCTGGCCGGTGGCCCTCGTAAACGCGCCGATGACGACCGAGCATACATCCTGCGTGCCGATGGCTCTGTCGCCATGC
CTGGCAGCTCCTATTGGTTCAGCACTGACGAAGAGATGCAGCCCGGTGACACCATCGTCATGCCGCTGGATACAGAGTAC
AAAGACAACCTGACATTGTGGAGCCAGGTAACGCAGATCATCTATAACACCGCAGTTGCAGTAGCGACGATTTCAGGGCT
GTAA

Upstream 100 bases:

>100_bases
CCTAGAACCTAGAACCTAGAACCTAGAACCTAGATTCTAGAAGCCCCTCTGGGGCGCCCTCGTTTTCGATTTATTCAATC
ACCTTTTACGGAGACATCTG

Downstream 100 bases:

>100_bases
CTCGCGAAGCGAGTTAGCAGGCCCTAGAATCTAGGGCGTTGCTTCGCAACTGCTAGGACACCCGCGAAGCGGGTTTCTAG
AACCTAGAACCTAGAACCTA

Product: ClpX, ATPase regulatory subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 827; Mature: 827

Protein sequence:

>827_residues
MLQQLKRFLIAGVGALVLVGGPVAAITPSPQMIEQFKNLPKAEQERIARQYGIDPSMLSGQATQPTIVNPEVVAPRNTGS
TTEVVNQSETDAFNQATKTESQIEAREEELEKQLKRFGYDMFAGEPSTFAPVSDVPVPAEYMMGPGDVLNVQLYGKENKN
FSLTVGRDGLVQFPDLGPISLVGMSFSEAKNFLTDKIAQSMIGIQANITMGELRSIRIFVAGDAYRPGSYTVSSLSTITQ
ALFVSGGINEIGSLRNIQLKRAGRTVGTFDLYDLLLAGDASKDLRLQSGDVVFIPSVGGLVSVTGEVRRPAIYEIKANDT
MADVLNMASGAKPGAYPEASTIERFSKDVKTVINVDLTQASGLSVKAKAGDLVRVKSTSTRIDNAVTLVGAVVRPGKYQY
RNGMRLRDMLPSIWGDLTLNADLDYGLLVREINQRGDVKVIQVSVGKAISGDDSANIALQPRDTLMVFDYADRATLLEPV
ITQLRQQSRFGDAIKLADINGSVRFPGKYPITEGATIKDLLVAAGGLKEGAYTLSAELTRQNISEQTGVTVTHQQLSLQD
VLLNDPSANIALQSRDVLTVRDLPDWQDTRWVTIKGEVRFPGTYSIQRGETLKHVLSRAGGLSEDAAPRSAVFLRESVKQ
KEKTELLKLSDELRREIAAKALTKDTPTVGYADAQNMLKELENVEVLGRLVVDINAIQLGIDEADLKLEDGDALFIPAQN
QTVSVMGQVQHPSTHRYKKGFTFDQYLELAGGPRKRADDDRAYILRADGSVAMPGSSYWFSTDEEMQPGDTIVMPLDTEY
KDNLTLWSQVTQIIYNTAVAVATISGL

Sequences:

>Translated_827_residues
MLQQLKRFLIAGVGALVLVGGPVAAITPSPQMIEQFKNLPKAEQERIARQYGIDPSMLSGQATQPTIVNPEVVAPRNTGS
TTEVVNQSETDAFNQATKTESQIEAREEELEKQLKRFGYDMFAGEPSTFAPVSDVPVPAEYMMGPGDVLNVQLYGKENKN
FSLTVGRDGLVQFPDLGPISLVGMSFSEAKNFLTDKIAQSMIGIQANITMGELRSIRIFVAGDAYRPGSYTVSSLSTITQ
ALFVSGGINEIGSLRNIQLKRAGRTVGTFDLYDLLLAGDASKDLRLQSGDVVFIPSVGGLVSVTGEVRRPAIYEIKANDT
MADVLNMASGAKPGAYPEASTIERFSKDVKTVINVDLTQASGLSVKAKAGDLVRVKSTSTRIDNAVTLVGAVVRPGKYQY
RNGMRLRDMLPSIWGDLTLNADLDYGLLVREINQRGDVKVIQVSVGKAISGDDSANIALQPRDTLMVFDYADRATLLEPV
ITQLRQQSRFGDAIKLADINGSVRFPGKYPITEGATIKDLLVAAGGLKEGAYTLSAELTRQNISEQTGVTVTHQQLSLQD
VLLNDPSANIALQSRDVLTVRDLPDWQDTRWVTIKGEVRFPGTYSIQRGETLKHVLSRAGGLSEDAAPRSAVFLRESVKQ
KEKTELLKLSDELRREIAAKALTKDTPTVGYADAQNMLKELENVEVLGRLVVDINAIQLGIDEADLKLEDGDALFIPAQN
QTVSVMGQVQHPSTHRYKKGFTFDQYLELAGGPRKRADDDRAYILRADGSVAMPGSSYWFSTDEEMQPGDTIVMPLDTEY
KDNLTLWSQVTQIIYNTAVAVATISGL
>Mature_827_residues
MLQQLKRFLIAGVGALVLVGGPVAAITPSPQMIEQFKNLPKAEQERIARQYGIDPSMLSGQATQPTIVNPEVVAPRNTGS
TTEVVNQSETDAFNQATKTESQIEAREEELEKQLKRFGYDMFAGEPSTFAPVSDVPVPAEYMMGPGDVLNVQLYGKENKN
FSLTVGRDGLVQFPDLGPISLVGMSFSEAKNFLTDKIAQSMIGIQANITMGELRSIRIFVAGDAYRPGSYTVSSLSTITQ
ALFVSGGINEIGSLRNIQLKRAGRTVGTFDLYDLLLAGDASKDLRLQSGDVVFIPSVGGLVSVTGEVRRPAIYEIKANDT
MADVLNMASGAKPGAYPEASTIERFSKDVKTVINVDLTQASGLSVKAKAGDLVRVKSTSTRIDNAVTLVGAVVRPGKYQY
RNGMRLRDMLPSIWGDLTLNADLDYGLLVREINQRGDVKVIQVSVGKAISGDDSANIALQPRDTLMVFDYADRATLLEPV
ITQLRQQSRFGDAIKLADINGSVRFPGKYPITEGATIKDLLVAAGGLKEGAYTLSAELTRQNISEQTGVTVTHQQLSLQD
VLLNDPSANIALQSRDVLTVRDLPDWQDTRWVTIKGEVRFPGTYSIQRGETLKHVLSRAGGLSEDAAPRSAVFLRESVKQ
KEKTELLKLSDELRREIAAKALTKDTPTVGYADAQNMLKELENVEVLGRLVVDINAIQLGIDEADLKLEDGDALFIPAQN
QTVSVMGQVQHPSTHRYKKGFTFDQYLELAGGPRKRADDDRAYILRADGSVAMPGSSYWFSTDEEMQPGDTIVMPLDTEY
KDNLTLWSQVTQIIYNTAVAVATISGL

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

Organism=Escherichia coli, GI1788376, Length=205, Percent_Identity=25.3658536585366, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787218, Length=205, Percent_Identity=26.8292682926829, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 90083; Mature: 90083

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQQLKRFLIAGVGALVLVGGPVAAITPSPQMIEQFKNLPKAEQERIARQYGIDPSMLSG
CHHHHHHHHHHCCCEEEEECCCEEEECCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCC
QATQPTIVNPEVVAPRNTGSTTEVVNQSETDAFNQATKTESQIEAREEELEKQLKRFGYD
CCCCCEECCCCEECCCCCCCHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
MFAGEPSTFAPVSDVPVPAEYMMGPGDVLNVQLYGKENKNFSLTVGRDGLVQFPDLGPIS
CCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCCCCEEEEECCCCCEECCCCCCEE
LVGMSFSEAKNFLTDKIAQSMIGIQANITMGELRSIRIFVAGDAYRPGSYTVSSLSTITQ
EECCCHHHHHHHHHHHHHHHHHCEEECCCHHCCEEEEEEEECCCCCCCCCCHHHHHHHHH
ALFVSGGINEIGSLRNIQLKRAGRTVGTFDLYDLLLAGDASKDLRLQSGDVVFIPSVGGL
HHHHCCCHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCEEECCCEEEEECCCCE
VSVTGEVRRPAIYEIKANDTMADVLNMASGAKPGAYPEASTIERFSKDVKTVINVDLTQA
EEECCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECC
SGLSVKAKAGDLVRVKSTSTRIDNAVTLVGAVVRPGKYQYRNGMRLRDMLPSIWGDLTLN
CCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHCCEEEE
ADLDYGLLVREINQRGDVKVIQVSVGKAISGDDSANIALQPRDTLMVFDYADRATLLEPV
CCCCHHHHHHHHCCCCCEEEEEEEECCEECCCCCCEEEECCCCEEEEEECCCCHHHHHHH
ITQLRQQSRFGDAIKLADINGSVRFPGKYPITEGATIKDLLVAAGGLKEGAYTLSAELTR
HHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEHHHHH
QNISEQTGVTVTHQQLSLQDVLLNDPSANIALQSRDVLTVRDLPDWQDTRWVTIKGEVRF
HCCCHHCCCEEEEHHHCEEHHHCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEEEEEEC
PGTYSIQRGETLKHVLSRAGGLSEDAAPRSAVFLRESVKQKEKTELLKLSDELRREIAAK
CCCEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTKDTPTVGYADAQNMLKELENVEVLGRLVVDINAIQLGIDEADLKLEDGDALFIPAQN
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEECCCEEEEECCC
QTVSVMGQVQHPSTHRYKKGFTFDQYLELAGGPRKRADDDRAYILRADGSVAMPGSSYWF
CEEEEEEEECCCCCCHHHCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCEECCCCCCEE
STDEEMQPGDTIVMPLDTEYKDNLTLWSQVTQIIYNTAVAVATISGL
CCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEEEECCC
>Mature Secondary Structure
MLQQLKRFLIAGVGALVLVGGPVAAITPSPQMIEQFKNLPKAEQERIARQYGIDPSMLSG
CHHHHHHHHHHCCCEEEEECCCEEEECCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCC
QATQPTIVNPEVVAPRNTGSTTEVVNQSETDAFNQATKTESQIEAREEELEKQLKRFGYD
CCCCCEECCCCEECCCCCCCHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
MFAGEPSTFAPVSDVPVPAEYMMGPGDVLNVQLYGKENKNFSLTVGRDGLVQFPDLGPIS
CCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCCCCEEEEECCCCCEECCCCCCEE
LVGMSFSEAKNFLTDKIAQSMIGIQANITMGELRSIRIFVAGDAYRPGSYTVSSLSTITQ
EECCCHHHHHHHHHHHHHHHHHCEEECCCHHCCEEEEEEEECCCCCCCCCCHHHHHHHHH
ALFVSGGINEIGSLRNIQLKRAGRTVGTFDLYDLLLAGDASKDLRLQSGDVVFIPSVGGL
HHHHCCCHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCEEECCCEEEEECCCCE
VSVTGEVRRPAIYEIKANDTMADVLNMASGAKPGAYPEASTIERFSKDVKTVINVDLTQA
EEECCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECC
SGLSVKAKAGDLVRVKSTSTRIDNAVTLVGAVVRPGKYQYRNGMRLRDMLPSIWGDLTLN
CCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHCCEEEE
ADLDYGLLVREINQRGDVKVIQVSVGKAISGDDSANIALQPRDTLMVFDYADRATLLEPV
CCCCHHHHHHHHCCCCCEEEEEEEECCEECCCCCCEEEECCCCEEEEEECCCCHHHHHHH
ITQLRQQSRFGDAIKLADINGSVRFPGKYPITEGATIKDLLVAAGGLKEGAYTLSAELTR
HHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEHHHHH
QNISEQTGVTVTHQQLSLQDVLLNDPSANIALQSRDVLTVRDLPDWQDTRWVTIKGEVRF
HCCCHHCCCEEEEHHHCEEHHHCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEEEEEEC
PGTYSIQRGETLKHVLSRAGGLSEDAAPRSAVFLRESVKQKEKTELLKLSDELRREIAAK
CCCEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTKDTPTVGYADAQNMLKELENVEVLGRLVVDINAIQLGIDEADLKLEDGDALFIPAQN
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEECCCEEEEECCC
QTVSVMGQVQHPSTHRYKKGFTFDQYLELAGGPRKRADDDRAYILRADGSVAMPGSSYWF
CEEEEEEEECCCCCCHHHCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCEECCCCCCEE
STDEEMQPGDTIVMPLDTEYKDNLTLWSQVTQIIYNTAVAVATISGL
CCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]