| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775388
Identifier: 119775388
GI number: 119775388
Start: 2716019
End: 2717179
Strand: Reverse
Name: 119775388
Synonym: Sama_2253
Alternate gene names: NA
Gene position: 2717179-2716019 (Counterclockwise)
Preceding gene: 119775389
Following gene: 119775387
Centisome position: 63.1
GC content: 33.76
Gene sequence:
>1161_bases TTGGAGAATAAAAAAAGTACACAGATATATGTTGTCGTTCATTCATATTATACTGAAGACACCCGGGTAAGAAAGCAATG TGAATTTTTAGCTTCAGAGGGATATGATGTAAATGTTATTTGTCTAAATAGAGGTCGAGAATCTGAATTTGAAATTTTTA ATTTAGTTAAGATTAATCGTAAAGACGTTTCTAGAACTCCTGGCAAATTGAGGACTACATTATCTTATATAATAGAATAT GTGAGGTTTTTCTTTTTTTCATTAATTCATTTATATAGGGTGAAACCAGATCTGGTAATTGCTCATAATATGCCAAATTT TTTGGTATTCAGTGCACTTTTCCCTAAATTAAGAGGTGTTCCTGTACTTCTCGATGTACACGATTTAATGCCAGAGATTT GGAGCATGATGAGTCAGAGTCGACTAATTAAAGCTTTGTTGCTTTTTGAGGAACGTATAAGTCATGCATTCGCTACTCAA TTAATTACTGTAAATCATGAAGTAGCAACTTATTTGAGTAGAAGGAATAAAAAAAAATACTTTGTAACTCACAACGGTCC ATTAACTAGTAAAGCTGTAAGGTCGAGAAGTTATGAAAACTATTGTGCTAGTAGATTTAATCTAGTATTTCACGGGAATA TACACGAGAGATATGGCCTTCAACGACTAGTTTCAATTTTACCTACGTTGAAAGAACGATATCAAAAAATTAACCTAAGT ATCTATGGCTATGGTCCCTATTTGGAATCAATCGAAAAACTAATTGACGAATTAAATATAGCTGATTATTGTAAAGTTTA TGGGCGCTTTGAACCTGACGATGTAGAGGTGATACTAGCGAATAAAGGGCTGGGCTTTGTTGTTGCCGATAAAAGCGCGC AGCATGATCTCGCAATTCCAGTTAAGCTAACTGAGTATATTTCTCACTCAGTCCCTGCGATTTGTACTGATTTAACTACT ACTAAATTATATTTTGAAGGCTGCGTGAATTTTTTTGATGTAACTGAAAAAAATAGATTGTTTGACACGGTTTGTAACGC TTTGGACCATCCGAAAGATACATTCTCTTTAGTCTCAAAGGCAAAAGAAAAACTATCTGAAATTTCTTGGGATAACGAAA AATCTCACTATAAGGCTTTTCTACAGCAGGTGATTAAGTGA
Upstream 100 bases:
>100_bases CCCTATTTTTCTTTGCTCGGTGCTGCATTCTCTACATTAATAACCTATAGTTTGGGCTTGATATATTATTCTTTAGTTAT TTTCAAATTGGAGAAATGTT
Downstream 100 bases:
>100_bases AGTTTAATAATATATTAGTCGTATCTCCACATACTGACGATGGAGAACTGGGGGCTGGTGGATTTATAGCGAGTCAGATA AAAAAAGGTGCTAAGGTAAC
Product: hypothetical protein
Products: NA
Alternate protein names: Group 1 Glycosyl Transferase; Glycosyl Transferase Group 1 Family Protein; Glycosyl Transferase Family Protein; Glycosyltransferase
Number of amino acids: Translated: 386; Mature: 386
Protein sequence:
>386_residues MENKKSTQIYVVVHSYYTEDTRVRKQCEFLASEGYDVNVICLNRGRESEFEIFNLVKINRKDVSRTPGKLRTTLSYIIEY VRFFFFSLIHLYRVKPDLVIAHNMPNFLVFSALFPKLRGVPVLLDVHDLMPEIWSMMSQSRLIKALLLFEERISHAFATQ LITVNHEVATYLSRRNKKKYFVTHNGPLTSKAVRSRSYENYCASRFNLVFHGNIHERYGLQRLVSILPTLKERYQKINLS IYGYGPYLESIEKLIDELNIADYCKVYGRFEPDDVEVILANKGLGFVVADKSAQHDLAIPVKLTEYISHSVPAICTDLTT TKLYFEGCVNFFDVTEKNRLFDTVCNALDHPKDTFSLVSKAKEKLSEISWDNEKSHYKAFLQQVIK
Sequences:
>Translated_386_residues MENKKSTQIYVVVHSYYTEDTRVRKQCEFLASEGYDVNVICLNRGRESEFEIFNLVKINRKDVSRTPGKLRTTLSYIIEY VRFFFFSLIHLYRVKPDLVIAHNMPNFLVFSALFPKLRGVPVLLDVHDLMPEIWSMMSQSRLIKALLLFEERISHAFATQ LITVNHEVATYLSRRNKKKYFVTHNGPLTSKAVRSRSYENYCASRFNLVFHGNIHERYGLQRLVSILPTLKERYQKINLS IYGYGPYLESIEKLIDELNIADYCKVYGRFEPDDVEVILANKGLGFVVADKSAQHDLAIPVKLTEYISHSVPAICTDLTT TKLYFEGCVNFFDVTEKNRLFDTVCNALDHPKDTFSLVSKAKEKLSEISWDNEKSHYKAFLQQVIK >Mature_386_residues MENKKSTQIYVVVHSYYTEDTRVRKQCEFLASEGYDVNVICLNRGRESEFEIFNLVKINRKDVSRTPGKLRTTLSYIIEY VRFFFFSLIHLYRVKPDLVIAHNMPNFLVFSALFPKLRGVPVLLDVHDLMPEIWSMMSQSRLIKALLLFEERISHAFATQ LITVNHEVATYLSRRNKKKYFVTHNGPLTSKAVRSRSYENYCASRFNLVFHGNIHERYGLQRLVSILPTLKERYQKINLS IYGYGPYLESIEKLIDELNIADYCKVYGRFEPDDVEVILANKGLGFVVADKSAQHDLAIPVKLTEYISHSVPAICTDLTT TKLYFEGCVNFFDVTEKNRLFDTVCNALDHPKDTFSLVSKAKEKLSEISWDNEKSHYKAFLQQVIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44864; Mature: 44864
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENKKSTQIYVVVHSYYTEDTRVRKQCEFLASEGYDVNVICLNRGRESEFEIFNLVKINR CCCCCCCEEEEEEEEHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHEEEEEEECC KDVSRTPGKLRTTLSYIIEYVRFFFFSLIHLYRVKPDLVIAHNMPNFLVFSALFPKLRGV HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC PVLLDVHDLMPEIWSMMSQSRLIKALLLFEERISHAFATQLITVNHEVATYLSRRNKKKY EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHCCCCEE FVTHNGPLTSKAVRSRSYENYCASRFNLVFHGNIHERYGLQRLVSILPTLKERYQKINLS EEEECCCCCHHHHHHCCHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHEECEE IYGYGPYLESIEKLIDELNIADYCKVYGRFEPDDVEVILANKGLGFVVADKSAQHDLAIP EEECCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCEEEC VKLTEYISHSVPAICTDLTTTKLYFEGCVNFFDVTEKNRLFDTVCNALDHPKDTFSLVSK HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH AKEKLSEISWDNEKSHYKAFLQQVIK HHHHHHHCCCCCCHHHHHHHHHHHHC >Mature Secondary Structure MENKKSTQIYVVVHSYYTEDTRVRKQCEFLASEGYDVNVICLNRGRESEFEIFNLVKINR CCCCCCCEEEEEEEEHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHEEEEEEECC KDVSRTPGKLRTTLSYIIEYVRFFFFSLIHLYRVKPDLVIAHNMPNFLVFSALFPKLRGV HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC PVLLDVHDLMPEIWSMMSQSRLIKALLLFEERISHAFATQLITVNHEVATYLSRRNKKKY EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHCCCCEE FVTHNGPLTSKAVRSRSYENYCASRFNLVFHGNIHERYGLQRLVSILPTLKERYQKINLS EEEECCCCCHHHHHHCCHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHEECEE IYGYGPYLESIEKLIDELNIADYCKVYGRFEPDDVEVILANKGLGFVVADKSAQHDLAIP EEECCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCEEEC VKLTEYISHSVPAICTDLTTTKLYFEGCVNFFDVTEKNRLFDTVCNALDHPKDTFSLVSK HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH AKEKLSEISWDNEKSHYKAFLQQVIK HHHHHHHCCCCCCHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA