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The map label for this gene is arnA [H]

Identifier: 119775381

GI number: 119775381

Start: 2710777

End: 2711610

Strand: Reverse

Name: arnA [H]

Synonym: Sama_2246

Alternate gene names: 119775381

Gene position: 2711610-2710777 (Counterclockwise)

Preceding gene: 119775382

Following gene: 119775380

Centisome position: 62.97

GC content: 40.89

Gene sequence:

>834_bases
ATGATTAAAGTTGGTTTTGTAACTTGTGTACAACTCGGCTACTCCTGTATGGAGGCTATATATGAGGTTGGTGGTAAATT
GGATTTGGCTATATCGTTGTTAGATAATCAAGCTAAATCAAAGTCTGGTAGGATATATTTGGACTCCTTTTGTAACTCAA
AGGGTATACCTTTGCTAAAGGCATCCCATGTAAATAATCCCGAGGTGATTCAATCAATCAAAGATGCCCAATTGGACTGG
CTTTTTATCATTGGCTGGTCTCAAATTGCCTCTCAGGAGGTTCTAGAAGCGCCAAAGCGGGGCGTTCTCGGTATGCACCC
AACGCTACTACCCACTGGCCGTGGCCGCGCAGCTATTCCTTGGGCCATTCTTAAAGGTTTATCTAAGACGGGTGTTACCT
TATTTAAATTGGATTCCGGAGTAGACACCGGTCCAGTGGTTGATCAAATTGAAATTGCCCTAGACAATCAAGTTGATGCT
AACATTTTATATCAGGAAGTTGATGCTGCTCATATTAGTTTGATCAAGAAGGTAATTCCTTCATTGATGGCAGACGATTT
AGTATTAAAAGAGCAAGACGAGTCGTTAGCTACTGAATGGCCAGGGCGTAAACCCGAAGATGGCTTAATTGATTTAACAG
GTTCAGTTTTTGATGCACATAGGATGGTAAGAGCTCTTACGCGGCCGTATCCAGGTGCATTCTATTTCGTTGATGGTATA
AAGGTGGTCGTTTGGAAGGCAGTTATATCTAAATCTCGTCTTTCAGATAGAACCATTAATTTCTATGATGGACAATTACA
GATTTTGGAATATGAGTTAATTAACGTCAAGTGA

Upstream 100 bases:

>100_bases
TATGCTAGAAAGGTCTCGTTTTTAACTGATGTTAAAATAATCCTTCGTACATTCACTTATTTGCTTAAGCCGCCACCTGT
TTATTAACTAAGGTTTATTT

Downstream 100 bases:

>100_bases
GGTCGTGCTGTGGCTGGATCATCTTTGCTTATTATTGGCGCTGGTAGTTTCGGTAGAACGGTTTATGAGGCCGCAATGAT
GTCTGGTGATTGGCAGATTA

Product: methionyl-tRNA formyltransferase

Products: NA

Alternate protein names: UDP-4-amino-4-deoxy-L-arabinose formyltransferase; ArnAFT; UDP-L-Ara4N formyltransferase; UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating; ArnADH; UDP-GlcUA decarboxylase; UDP-glucuronic acid dehydrogenase [H]

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MIKVGFVTCVQLGYSCMEAIYEVGGKLDLAISLLDNQAKSKSGRIYLDSFCNSKGIPLLKASHVNNPEVIQSIKDAQLDW
LFIIGWSQIASQEVLEAPKRGVLGMHPTLLPTGRGRAAIPWAILKGLSKTGVTLFKLDSGVDTGPVVDQIEIALDNQVDA
NILYQEVDAAHISLIKKVIPSLMADDLVLKEQDESLATEWPGRKPEDGLIDLTGSVFDAHRMVRALTRPYPGAFYFVDGI
KVVVWKAVISKSRLSDRTINFYDGQLQILEYELINVK

Sequences:

>Translated_277_residues
MIKVGFVTCVQLGYSCMEAIYEVGGKLDLAISLLDNQAKSKSGRIYLDSFCNSKGIPLLKASHVNNPEVIQSIKDAQLDW
LFIIGWSQIASQEVLEAPKRGVLGMHPTLLPTGRGRAAIPWAILKGLSKTGVTLFKLDSGVDTGPVVDQIEIALDNQVDA
NILYQEVDAAHISLIKKVIPSLMADDLVLKEQDESLATEWPGRKPEDGLIDLTGSVFDAHRMVRALTRPYPGAFYFVDGI
KVVVWKAVISKSRLSDRTINFYDGQLQILEYELINVK
>Mature_277_residues
MIKVGFVTCVQLGYSCMEAIYEVGGKLDLAISLLDNQAKSKSGRIYLDSFCNSKGIPLLKASHVNNPEVIQSIKDAQLDW
LFIIGWSQIASQEVLEAPKRGVLGMHPTLLPTGRGRAAIPWAILKGLSKTGVTLFKLDSGVDTGPVVDQIEIALDNQVDA
NILYQEVDAAHISLIKKVIPSLMADDLVLKEQDESLATEWPGRKPEDGLIDLTGSVFDAHRMVRALTRPYPGAFYFVDGI
KVVVWKAVISKSRLSDRTINFYDGQLQILEYELINVK

Specific function: Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabin

COG id: COG0223

COG function: function code J; Methionyl-tRNA formyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the sugar epimerase family. UDP-glucuronic acid decarboxylase subfamily [H]

Homologues:

Organism=Homo sapiens, GI238814322, Length=174, Percent_Identity=28.1609195402299, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1788589, Length=238, Percent_Identity=27.7310924369748, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789683, Length=205, Percent_Identity=28.2926829268293, Blast_Score=84, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI133930964, Length=201, Percent_Identity=25.8706467661692, Blast_Score=71, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021168
- InterPro:   IPR001509
- InterPro:   IPR005794
- InterPro:   IPR005793
- InterPro:   IPR002376
- InterPro:   IPR011034
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase; PF02911 Formyl_trans_C; PF00551 Formyl_trans_N [H]

EC number: =2.1.2.13; =1.1.1.305 [H]

Molecular weight: Translated: 30541; Mature: 30541

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVGFVTCVQLGYSCMEAIYEVGGKLDLAISLLDNQAKSKSGRIYLDSFCNSKGIPLLK
CEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHCCCCCCCCCEEEECCCCCCCCCEEE
ASHVNNPEVIQSIKDAQLDWLFIIGWSQIASQEVLEAPKRGVLGMHPTLLPTGRGRAAIP
ECCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
WAILKGLSKTGVTLFKLDSGVDTGPVVDQIEIALDNQVDANILYQEVDAAHISLIKKVIP
HHHHHCCHHCCEEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
SLMADDLVLKEQDESLATEWPGRKPEDGLIDLTGSVFDAHRMVRALTRPYPGAFYFVDGI
HHHHCCHHEECCCCHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCH
KVVVWKAVISKSRLSDRTINFYDGQLQILEYELINVK
HHHHHHHHHHHHHCCCCEEEEECCEEEEEEEEEEECC
>Mature Secondary Structure
MIKVGFVTCVQLGYSCMEAIYEVGGKLDLAISLLDNQAKSKSGRIYLDSFCNSKGIPLLK
CEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHCCCCCCCCCEEEECCCCCCCCCEEE
ASHVNNPEVIQSIKDAQLDWLFIIGWSQIASQEVLEAPKRGVLGMHPTLLPTGRGRAAIP
ECCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
WAILKGLSKTGVTLFKLDSGVDTGPVVDQIEIALDNQVDANILYQEVDAAHISLIKKVIP
HHHHHCCHHCCEEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
SLMADDLVLKEQDESLATEWPGRKPEDGLIDLTGSVFDAHRMVRALTRPYPGAFYFVDGI
HHHHCCHHEECCCCHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCH
KVVVWKAVISKSRLSDRTINFYDGQLQILEYELINVK
HHHHHHHHHHHHHCCCCEEEEECCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA