| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is phhB
Identifier: 119775356
GI number: 119775356
Start: 2685441
End: 2685779
Strand: Reverse
Name: phhB
Synonym: Sama_2221
Alternate gene names: NA
Gene position: 2685779-2685441 (Counterclockwise)
Preceding gene: 119775357
Following gene: 119775355
Centisome position: 62.37
GC content: 54.57
Gene sequence:
>339_bases ATGAGCGAATTAGCATCCATGAAGTGCGAAGCCTGCCAGGCTGATGCCCCCAAGGTCACTGACGCCGAACTGGCTGAGCT TATCCGGATGATCCCCGACTGGAGCGTACAAGTGCGCGACGGCATCATGCAGTTGGAGCGTGTGTACAAATTTAAAAACT TCAAGCTGGCCATGGCCTTCTCCAACAAGCTGGCAGAGCTTGCCGAAGAAGAATTTCATCACCCCGGTATTTTCACCGAG TGGGGTAAGGTCACGGTGACCTGGTGGTCTCACTCCATCAAGGGGCTGCACCGCAACGACTTCATCATGGCAGCCAAGAC AGACCAGTTGCTGGACTGA
Upstream 100 bases:
>100_bases GCAATCCGTCACCCGAGCCAGACAACTAGGGCTGCATGCCCCCTTGTTTGAGCCCAAGGCCAAGGCCGTTTAAATAAATA GAAGAATTACAGGAGCAGTA
Downstream 100 bases:
>100_bases TTTGGATTTAAATTAAATCAGCGCCTTACGTTAAGTTGGGCGCTGATTTTTTTCTGGGTTAATCTGAGTTCTGTAAACAA GACTTGCCACTTTTCCCAAT
Product: pterin-4-alpha-carbinolamine dehydratase
Products: NA
Alternate protein names: PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Pterin carbinolamine dehydratase; PCD
Number of amino acids: Translated: 112; Mature: 111
Protein sequence:
>112_residues MSELASMKCEACQADAPKVTDAELAELIRMIPDWSVQVRDGIMQLERVYKFKNFKLAMAFSNKLAELAEEEFHHPGIFTE WGKVTVTWWSHSIKGLHRNDFIMAAKTDQLLD
Sequences:
>Translated_112_residues MSELASMKCEACQADAPKVTDAELAELIRMIPDWSVQVRDGIMQLERVYKFKNFKLAMAFSNKLAELAEEEFHHPGIFTE WGKVTVTWWSHSIKGLHRNDFIMAAKTDQLLD >Mature_111_residues SELASMKCEACQADAPKVTDAELAELIRMIPDWSVQVRDGIMQLERVYKFKNFKLAMAFSNKLAELAEEEFHHPGIFTEW GKVTVTWWSHSIKGLHRNDFIMAAKTDQLLD
Specific function: Unknown
COG id: COG2154
COG function: function code H; Pterin-4a-carbinolamine dehydratase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pterin-4-alpha-carbinolamine dehydratase family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PHS_SHEAM (A1S7S0)
Other databases:
- EMBL: CP000507 - RefSeq: YP_928096.1 - ProteinModelPortal: A1S7S0 - SMR: A1S7S0 - STRING: A1S7S0 - GeneID: 4604471 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_2221 - NMPDR: fig|326297.7.peg.2085 - eggNOG: COG2154 - HOGENOM: HBG705804 - OMA: ILTEWGK - ProtClustDB: PRK00823 - HAMAP: MF_00434 - InterPro: IPR001533 - Gene3D: G3DSA:3.30.1360.20 - PANTHER: PTHR12599
Pfam domain/function: PF01329 Pterin_4a; SSF55248 Trans_pterinDh
EC number: =4.2.1.96
Molecular weight: Translated: 12887; Mature: 12756
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELASMKCEACQADAPKVTDAELAELIRMIPDWSVQVRDGIMQLERVYKFKNFKLAMAF CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEHHH SNKLAELAEEEFHHPGIFTEWGKVTVTWWSHSIKGLHRNDFIMAAKTDQLLD HHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCC >Mature Secondary Structure SELASMKCEACQADAPKVTDAELAELIRMIPDWSVQVRDGIMQLERVYKFKNFKLAMAF CCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEHHH SNKLAELAEEEFHHPGIFTEWGKVTVTWWSHSIKGLHRNDFIMAAKTDQLLD HHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA