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The map label for this gene is ymdC [H]

Identifier: 119775337

GI number: 119775337

Start: 2659662

End: 2661188

Strand: Reverse

Name: ymdC [H]

Synonym: Sama_2202

Alternate gene names: 119775337

Gene position: 2661188-2659662 (Counterclockwise)

Preceding gene: 119775338

Following gene: 119775336

Centisome position: 61.8

GC content: 54.94

Gene sequence:

>1527_bases
ATGCCCCCACGTGTTTCCTGGCGTTCATTTTGGCTGATGATCCTCGGATGTATCTCACTCGGGGGTTGCAGTAGTCTGCC
TGAACTTAAAGATGCACCGCGGAGTTACAAGCTGACATCGGCGCCGGATAGCCTGATAGCCGGATACCTGGCAGAGCCAC
TGGCCGGTCACCCGGGGCAAAGTGGCGTGTTGCCCCTGTTTGAGGGGCTGGATGCCATGGTGGCCAGGTTGGCGCTGATA
AAGTCCGCCGAAACCAGCATCGATTTGCAATATTACATCTTTCGCAACGATGACACTGGGCGACTTCTGGCCTGGCAGCT
GCTGGATGCAGCAGACCGAGGCGTACGGGTACGTTTGCTGCTGGACGATACTGCCAGCGTCAATATTGACCGGCAGTTGG
CGGTCATGGCGAGCCACCCGAATGTCTCCGTCAGGCTCTACAATCCATCGTCTCATCGCACCCTCAGGGCCTTGTCGTTT
GTCACCGATTTCGGTCGCATGAATCATCGCATGCACAACAAATCACTGACGGTGGATAATCGCCTCAGCGTGGTGGGCGG
GCGCAATATCGGCAACGAATATTTCTCCAATGACGAAGATGTAGAGTTTGGCGATCTCGACGTGTTGTTGACCGGACCGG
TGGTAGAGCAGGTCTCTGACCAATTTGATGCCTATTGGAATGGCAGCAACACCTATCCGGTCGAGCTTCTGACCGAGCAT
CCCGTACAGTCCGATGAGCTCGCAGCCATGTATGACCAGATTGCCAACCAGAAGCGCCAGCTTGAGGAGCATCCCTATAT
ACAGCGCCTCACCAAGTCGCCGCTGCTCAGACACATGGCGGACAATCGTCTGGAATGGTTTTGGGGGGAGGCGAAAGTTC
TTGCCGATCCTCATGATAAGCGAGAAGGGCAAGCGGAAGCCTGGATGATCACGCCCTTGCTAGATGAGTTTCAGCAAACC
CGGGAGCGCCTGGTTATCATTTCGCCTTACTTTGTTCCCACAACAGAGGGCGTCAGATTGCTTACCGGGCTTGCCAAGCG
CGGTGTCGCGGTAACCGTGATCACCAATAGCCTGGCTGCCACCGACGTGCTGGCGGTTCATTCCGGTTACAAGGGATATC
GTGAGGCACTCCTTCGCGCGGGAGTTTCCCTGTATGAAGTGAAAGCGACCGGCAAGCGCCCGAGTCATTCCTGGAAAGGC
AGCTCCCGCTCCAGTTTGCATGCCAAGAGCTTTTTGTTTGACGATGACAGGCTCTTTGTCGGCTCCTTTAATTTTGATCC
GCGTTCGGCCTGGCTTAATACTGAAATGGGGGTCATGGTTAATCAGGGGGAGCTGAATCAGAAAATTCATGCCTGGCTGC
CCCAGTTTTTAACCAACAAAACTTACCAGGTGAAGCTTGGCAGCGATGGCCTCTACTGGCATGAACTCAGTTCGGGAAAA
GATATTTATGCCGAGCCCCAGGCCGGATTTTGGCGCCGCTTTATGGCCGATGTGCTGGCGCTGTTTCCACTGGAATCCCA
GCTTTAA

Upstream 100 bases:

>100_bases
GGAGCAGGCCTTCACGGCCGAAGGTTGGGATCAATTAGTTTACGACGTGTTATATTCAATGCAGAATGAATCCAATTGAA
AGCAAAAGGAATTCAACTGT

Downstream 100 bases:

>100_bases
TCCTGTGAAGGGGAACTATGAAGAGTAAAGCCAATCAATCCCAGGGTCTGCTGCTGTTTCATTTGAGTCGCTCGCAGCTG
TTTGCCATCGGTACCCTGAA

Product: phopholipase D-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MPPRVSWRSFWLMILGCISLGGCSSLPELKDAPRSYKLTSAPDSLIAGYLAEPLAGHPGQSGVLPLFEGLDAMVARLALI
KSAETSIDLQYYIFRNDDTGRLLAWQLLDAADRGVRVRLLLDDTASVNIDRQLAVMASHPNVSVRLYNPSSHRTLRALSF
VTDFGRMNHRMHNKSLTVDNRLSVVGGRNIGNEYFSNDEDVEFGDLDVLLTGPVVEQVSDQFDAYWNGSNTYPVELLTEH
PVQSDELAAMYDQIANQKRQLEEHPYIQRLTKSPLLRHMADNRLEWFWGEAKVLADPHDKREGQAEAWMITPLLDEFQQT
RERLVIISPYFVPTTEGVRLLTGLAKRGVAVTVITNSLAATDVLAVHSGYKGYREALLRAGVSLYEVKATGKRPSHSWKG
SSRSSLHAKSFLFDDDRLFVGSFNFDPRSAWLNTEMGVMVNQGELNQKIHAWLPQFLTNKTYQVKLGSDGLYWHELSSGK
DIYAEPQAGFWRRFMADVLALFPLESQL

Sequences:

>Translated_508_residues
MPPRVSWRSFWLMILGCISLGGCSSLPELKDAPRSYKLTSAPDSLIAGYLAEPLAGHPGQSGVLPLFEGLDAMVARLALI
KSAETSIDLQYYIFRNDDTGRLLAWQLLDAADRGVRVRLLLDDTASVNIDRQLAVMASHPNVSVRLYNPSSHRTLRALSF
VTDFGRMNHRMHNKSLTVDNRLSVVGGRNIGNEYFSNDEDVEFGDLDVLLTGPVVEQVSDQFDAYWNGSNTYPVELLTEH
PVQSDELAAMYDQIANQKRQLEEHPYIQRLTKSPLLRHMADNRLEWFWGEAKVLADPHDKREGQAEAWMITPLLDEFQQT
RERLVIISPYFVPTTEGVRLLTGLAKRGVAVTVITNSLAATDVLAVHSGYKGYREALLRAGVSLYEVKATGKRPSHSWKG
SSRSSLHAKSFLFDDDRLFVGSFNFDPRSAWLNTEMGVMVNQGELNQKIHAWLPQFLTNKTYQVKLGSDGLYWHELSSGK
DIYAEPQAGFWRRFMADVLALFPLESQL
>Mature_507_residues
PPRVSWRSFWLMILGCISLGGCSSLPELKDAPRSYKLTSAPDSLIAGYLAEPLAGHPGQSGVLPLFEGLDAMVARLALIK
SAETSIDLQYYIFRNDDTGRLLAWQLLDAADRGVRVRLLLDDTASVNIDRQLAVMASHPNVSVRLYNPSSHRTLRALSFV
TDFGRMNHRMHNKSLTVDNRLSVVGGRNIGNEYFSNDEDVEFGDLDVLLTGPVVEQVSDQFDAYWNGSNTYPVELLTEHP
VQSDELAAMYDQIANQKRQLEEHPYIQRLTKSPLLRHMADNRLEWFWGEAKVLADPHDKREGQAEAWMITPLLDEFQQTR
ERLVIISPYFVPTTEGVRLLTGLAKRGVAVTVITNSLAATDVLAVHSGYKGYREALLRAGVSLYEVKATGKRPSHSWKGS
SRSSLHAKSFLFDDDRLFVGSFNFDPRSAWLNTEMGVMVNQGELNQKIHAWLPQFLTNKTYQVKLGSDGLYWHELSSGKD
IYAEPQAGFWRRFMADVLALFPLESQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=463, Percent_Identity=43.1965442764579, Blast_Score=353, Evalue=2e-98,
Organism=Escherichia coli, GI1787007, Length=385, Percent_Identity=27.2727272727273, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57162; Mature: 57030

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPRVSWRSFWLMILGCISLGGCSSLPELKDAPRSYKLTSAPDSLIAGYLAEPLAGHPGQ
CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCC
SGVLPLFEGLDAMVARLALIKSAETSIDLQYYIFRNDDTGRLLAWQLLDAADRGVRVRLL
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEHHHHHHHCCCCEEEEEE
LDDTASVNIDRQLAVMASHPNVSVRLYNPSSHRTLRALSFVTDFGRMNHRMHNKSLTVDN
EECCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RLSVVGGRNIGNEYFSNDEDVEFGDLDVLLTGPVVEQVSDQFDAYWNGSNTYPVELLTEH
CEEEECCCCCCHHHCCCCCCCEECCEEEEEECHHHHHHHHHHCEEECCCCCEEEEEEECC
PVQSDELAAMYDQIANQKRQLEEHPYIQRLTKSPLLRHMADNRLEWFWGEAKVLADPHDK
CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCC
REGQAEAWMITPLLDEFQQTRERLVIISPYFVPTTEGVRLLTGLAKRGVAVTVITNSLAA
CCCCCCEEEECHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCEEEEEEECCHHH
TDVLAVHSGYKGYREALLRAGVSLYEVKATGKRPSHSWKGSSRSSLHAKSFLFDDDRLFV
HHHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEEECCCEEEE
GSFNFDPRSAWLNTEMGVMVNQGELNQKIHAWLPQFLTNKTYQVKLGSDGLYWHELSSGK
EECCCCCCHHEECCCCCEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCC
DIYAEPQAGFWRRFMADVLALFPLESQL
CEEECCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PPRVSWRSFWLMILGCISLGGCSSLPELKDAPRSYKLTSAPDSLIAGYLAEPLAGHPGQ
CCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCC
SGVLPLFEGLDAMVARLALIKSAETSIDLQYYIFRNDDTGRLLAWQLLDAADRGVRVRLL
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEHHHHHHHCCCCEEEEEE
LDDTASVNIDRQLAVMASHPNVSVRLYNPSSHRTLRALSFVTDFGRMNHRMHNKSLTVDN
EECCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RLSVVGGRNIGNEYFSNDEDVEFGDLDVLLTGPVVEQVSDQFDAYWNGSNTYPVELLTEH
CEEEECCCCCCHHHCCCCCCCEECCEEEEEECHHHHHHHHHHCEEECCCCCEEEEEEECC
PVQSDELAAMYDQIANQKRQLEEHPYIQRLTKSPLLRHMADNRLEWFWGEAKVLADPHDK
CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCC
REGQAEAWMITPLLDEFQQTRERLVIISPYFVPTTEGVRLLTGLAKRGVAVTVITNSLAA
CCCCCCEEEECHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCEEEEEEECCHHH
TDVLAVHSGYKGYREALLRAGVSLYEVKATGKRPSHSWKGSSRSSLHAKSFLFDDDRLFV
HHHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEEECCCEEEE
GSFNFDPRSAWLNTEMGVMVNQGELNQKIHAWLPQFLTNKTYQVKLGSDGLYWHELSSGK
EECCCCCCHHEECCCCCEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCC
DIYAEPQAGFWRRFMADVLALFPLESQL
CEEECCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]