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The map label for this gene is secD [H]

Identifier: 119775326

GI number: 119775326

Start: 2649111

End: 2650961

Strand: Reverse

Name: secD [H]

Synonym: Sama_2191

Alternate gene names: 119775326

Gene position: 2650961-2649111 (Counterclockwise)

Preceding gene: 119775327

Following gene: 119775325

Centisome position: 61.56

GC content: 55.54

Gene sequence:

>1851_bases
GTGCTAAATAAATACCCAATGTGGAAGAACATCATGGTGGTGCTGGTCATCGCCATTGGTGGCTTCTATGCGCTGCCCAA
CCTGTTCGGCGAGGATCATGCCGTACAGGTCGTGGCTACCCGTGGTGCAGACGTTACCGCAACTACCCAATCTGACGTGT
CAGCAGCGCTGACCGCCAAGGGCATTGGCATCAAGCGATCTGAGCTTGAAAATGGCCAGTTGCTGGTGCGTGTGGCCAAT
GCTGAAGATCAGCTCACAGCCAAAGAAACCATTGCCGAATTGCTGGGCGACAAATACACAGTAGCCCTTAACCTGGCACC
GGCCACTCCTGAGTGGCTGGAGTCAGTGGGCGGCAGCCCCATGAAGCTGGGTCTCGACCTTCGCGGCGGTGTGCACTTCC
TGATGGAAGTGGACATGAGCGAAGCCATCCGCAAGATGGAAGAGGCCAAGATTGCCGATTTTCGCAGTCAGCTTCGTGAA
GAGCGTATTCGCTATGCCGGTGTGCATCGCACCGTGCGCGGTATCGAAATCAAGTTCCGTGACGCCGAGACTCTGTCTCA
GGCAGAACGATTCCTGAAGAGCCGTGGCAATGACATGGTGTTTTCGGATATCTCCAGTGGTGACAACGTGGTACTGCTGG
CGGTGATGAGCGAGGCCTACCTCAAGCAAATCAAAGAGGAAGCCCTGCTGCAAAACATCACGACCATCCGTAACCGTGTG
AACGAGCTGGGTGTGGCTGAGCCTGTGGTGCAGCGTCAGGGTGCTGAGCGCATCATCGTGGAACTTCCCGGCGTACAGGA
CACTGCCCGCGCCAAAGAAATTCTGGGTGCCACAGCCTCCATTGAATTCCATATGGTGGATGAAAAAGCCGACGTGGCTG
CTGCTGCCAATGGCCGTGTGCCAGCCGGCAGCGAGCTGTATCAGCGCCGCGAAGGCGGCCCTGTGGTACTGAAGAAAGAA
GTGATGCTGACCGGTGACCATATTACCGGTGCTCAGCCTTCTTTCGACGAATACAGCCGTCCACAGGTCGCTATTCAGTT
GGATGCCAAGGGTGGGGAAATCTTCTCCAACGTTACCAAGGACAACATCGGCAAGCCGATGGCGACCCTGTTCATTGAAT
ACAAGGACAGCGGTGAGCGTAACCCCGATGGCAGCGTGAAGATGCGTAAAATCGAGGAAGTTATCTCGGTTGCCACCATT
CAGGCACGCCTTGGCCGTAACTTTGTTATCACCGGTCTGACCCACAGCGAGTCGCAGAATCTGGCGCTCTTGCTGCGTGC
CGGTGCACTGATTGCTCCTGTATCCATCGTGGAAGAACGCACCATTGGTCCAAGCCTGGGTGCCGAAAACATCGAAAACG
GTCTGCAGGCGATGATCTGGGGTATGGTTGTGGTACTGGCCTTTATGCTGGTGTACTACCGTGCCTTCGGTGTGATTGCC
AACCTGGCGCTGTGTGCCAACCTCATCATGGTGGTGGGCGTGATGTCCATGATCCCGGGTGCGGTGCTGACCCTGCCGGG
TATTGCCGGTATGGTATTGACTGTGGGTATGGCTGTTGACGGCAACGTACTGATTTATGAGCGTATCCGTGAAGAGCTTC
GTGCCGGTCGCAGCGTACAGCAGGCTATCCACGAAGGTTATGGCAACGCACTGTCGACCATCGCCGACGCCAACATCACC
ACCTTCCTGACGGCTCTGATTTTGTTTGCTGTGGGTACAGGTGCGGTAAAAGGCTTTGCCGTGACCCTGATGATTGGTAT
TGCCACCTCCATGTTTACTGCCATTGTGGGTACACGAGCTATCGTGAACGCCCTCTGGGGTGGTAAGCGTGTGAAGAAAT
TGTCGATTTAA

Upstream 100 bases:

>100_bases
GCTGAATGACAGCACCAACATCACCATCAAAAAGGACTACATCGCAGCGGTATTGCCAAAAGGCTCTATCCAGTCCCTGT
AAGCCAAGAGGGCGAAAGGC

Downstream 100 bases:

>100_bases
GGAAGCCCATATCATGTTTCAGATTTTAGATATTAAAGGCTCCATCAATTTCTTACGACACGCTGCGCCCATCAGTATCC
TGTCTGCCATTTTGGTGGTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 616; Mature: 616

Protein sequence:

>616_residues
MLNKYPMWKNIMVVLVIAIGGFYALPNLFGEDHAVQVVATRGADVTATTQSDVSAALTAKGIGIKRSELENGQLLVRVAN
AEDQLTAKETIAELLGDKYTVALNLAPATPEWLESVGGSPMKLGLDLRGGVHFLMEVDMSEAIRKMEEAKIADFRSQLRE
ERIRYAGVHRTVRGIEIKFRDAETLSQAERFLKSRGNDMVFSDISSGDNVVLLAVMSEAYLKQIKEEALLQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDEKADVAAAANGRVPAGSELYQRREGGPVVLKKE
VMLTGDHITGAQPSFDEYSRPQVAIQLDAKGGEIFSNVTKDNIGKPMATLFIEYKDSGERNPDGSVKMRKIEEVISVATI
QARLGRNFVITGLTHSESQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENGLQAMIWGMVVVLAFMLVYYRAFGVIA
NLALCANLIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNALSTIADANIT
TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNALWGGKRVKKLSI

Sequences:

>Translated_616_residues
MLNKYPMWKNIMVVLVIAIGGFYALPNLFGEDHAVQVVATRGADVTATTQSDVSAALTAKGIGIKRSELENGQLLVRVAN
AEDQLTAKETIAELLGDKYTVALNLAPATPEWLESVGGSPMKLGLDLRGGVHFLMEVDMSEAIRKMEEAKIADFRSQLRE
ERIRYAGVHRTVRGIEIKFRDAETLSQAERFLKSRGNDMVFSDISSGDNVVLLAVMSEAYLKQIKEEALLQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDEKADVAAAANGRVPAGSELYQRREGGPVVLKKE
VMLTGDHITGAQPSFDEYSRPQVAIQLDAKGGEIFSNVTKDNIGKPMATLFIEYKDSGERNPDGSVKMRKIEEVISVATI
QARLGRNFVITGLTHSESQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENGLQAMIWGMVVVLAFMLVYYRAFGVIA
NLALCANLIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNALSTIADANIT
TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNALWGGKRVKKLSI
>Mature_616_residues
MLNKYPMWKNIMVVLVIAIGGFYALPNLFGEDHAVQVVATRGADVTATTQSDVSAALTAKGIGIKRSELENGQLLVRVAN
AEDQLTAKETIAELLGDKYTVALNLAPATPEWLESVGGSPMKLGLDLRGGVHFLMEVDMSEAIRKMEEAKIADFRSQLRE
ERIRYAGVHRTVRGIEIKFRDAETLSQAERFLKSRGNDMVFSDISSGDNVVLLAVMSEAYLKQIKEEALLQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDEKADVAAAANGRVPAGSELYQRREGGPVVLKKE
VMLTGDHITGAQPSFDEYSRPQVAIQLDAKGGEIFSNVTKDNIGKPMATLFIEYKDSGERNPDGSVKMRKIEEVISVATI
QARLGRNFVITGLTHSESQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENGLQAMIWGMVVVLAFMLVYYRAFGVIA
NLALCANLIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNALSTIADANIT
TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNALWGGKRVKKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=618, Percent_Identity=60.0323624595469, Blast_Score=734, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66448; Mature: 66448

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKYPMWKNIMVVLVIAIGGFYALPNLFGEDHAVQVVATRGADVTATTQSDVSAALTAK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECHHHHHHHHHHC
GIGIKRSELENGQLLVRVANAEDQLTAKETIAELLGDKYTVALNLAPATPEWLESVGGSP
CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMSEAIRKMEEAKIADFRSQLREERIRYAGVHRTVRGIEIKFR
EEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEC
DAETLSQAERFLKSRGNDMVFSDISSGDNVVLLAVMSEAYLKQIKEEALLQNITTIRNRV
CHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDEKADVAAAANGRV
HHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCHHHCCCCCC
PAGSELYQRREGGPVVLKKEVMLTGDHITGAQPSFDEYSRPQVAIQLDAKGGEIFSNVTK
CCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCH
DNIGKPMATLFIEYKDSGERNPDGSVKMRKIEEVISVATIQARLGRNFVITGLTHSESQN
HHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
LALLLRAGALIAPVSIVEERTIGPSLGAENIENGLQAMIWGMVVVLAFMLVYYRAFGVIA
EEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLALCANLIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHCHHHH
QAIHEGYGNALSTIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRA
HHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNALWGGKRVKKLSI
HHHHHHCCCCEEECCC
>Mature Secondary Structure
MLNKYPMWKNIMVVLVIAIGGFYALPNLFGEDHAVQVVATRGADVTATTQSDVSAALTAK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECHHHHHHHHHHC
GIGIKRSELENGQLLVRVANAEDQLTAKETIAELLGDKYTVALNLAPATPEWLESVGGSP
CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMSEAIRKMEEAKIADFRSQLREERIRYAGVHRTVRGIEIKFR
EEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEC
DAETLSQAERFLKSRGNDMVFSDISSGDNVVLLAVMSEAYLKQIKEEALLQNITTIRNRV
CHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDEKADVAAAANGRV
HHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCHHHCCCCCC
PAGSELYQRREGGPVVLKKEVMLTGDHITGAQPSFDEYSRPQVAIQLDAKGGEIFSNVTK
CCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCH
DNIGKPMATLFIEYKDSGERNPDGSVKMRKIEEVISVATIQARLGRNFVITGLTHSESQN
HHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
LALLLRAGALIAPVSIVEERTIGPSLGAENIENGLQAMIWGMVVVLAFMLVYYRAFGVIA
EEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLALCANLIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHCHHHH
QAIHEGYGNALSTIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRA
HHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNALWGGKRVKKLSI
HHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]