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The map label for this gene is secF [H]

Identifier: 119775325

GI number: 119775325

Start: 2648150

End: 2649097

Strand: Reverse

Name: secF [H]

Synonym: Sama_2190

Alternate gene names: 119775325

Gene position: 2649097-2648150 (Counterclockwise)

Preceding gene: 119775326

Following gene: 119775324

Centisome position: 61.52

GC content: 56.12

Gene sequence:

>948_bases
ATGTTTCAGATTTTAGATATTAAAGGCTCCATCAATTTCTTACGACACGCTGCGCCCATCAGTATCCTGTCTGCCATTTT
GGTGGTGGGTTCGCTGGTGTCGCTGGCGACGCGTGGCATTAACTGGGGTCTGGACTTTACCGGTGGCACCGTGGTGGAGA
TGGAGTTCTCCAAGCCGGTTAATCTCGAGACACTGCGCAACAACCTGACCGAGCCTCTCGTTGCCGGCGCCGTGGTACAG
AACTTCGGTTCGAGCCGTGACGTGCTGGTGCGTCTGCAGGTACGTGAAGGCGTGAAGAGTGACGCCCAGGTGCGTGTTGT
CATGGCCAAAGCCACAGAACTCGACCCCGAAGTTACCCAGAAACGGGTGGAATTTGTCGGTCCGCAGGTGGGTAAGGAAT
TGGCAGAGCAGGGCGGCCTCGCGGTACTGGTGGCGCTTATCTGTATCCTTATTTACGTGTCGTTCCGCTTCGAGTGGCGT
CTTGCCGCAGGTTCGGTAGCCGCACTGGCTCACGACGTTATCGTGACCCTGGGCGTGTTCTCTGTGCTGCAGCTGGAGTT
TGACCTCACGGTATTGGCGGGTCTCTTGACCGTTGTGGGTTACTCGCTAAACGACACTATCGTGGTATTCGACCGCATCC
GTGAGAACTTCCTCAAGATGCGTAAGGGCACCCCGGAAGAGGTGGTCAACAACTCCATCACCCAGACGATGAGCCGTACC
ATCATTACGACAGGTACCACGCTCATTACCGTGGTGGCCTTGTTCCTCAAGGGCGGCACCCTTATTCACGGCTTCGCCAC
GGCGCTGCTGCTGGGTATTGTGGTGGGTACCTATTCGTCTATCTACGTGGCGAGTTATCTGGCCATTCGTCTTGGCATCA
ACCGTGAGCACATGATGCCGGTAGAAGTCGAGAAGGAAGGCGCCGACCAGCCTTCCATTATGCCTTAA

Upstream 100 bases:

>100_bases
ACCTCCATGTTTACTGCCATTGTGGGTACACGAGCTATCGTGAACGCCCTCTGGGGTGGTAAGCGTGTGAAGAAATTGTC
GATTTAAGGAAGCCCATATC

Downstream 100 bases:

>100_bases
GCGGCATAACGACCTTAAAAGCCACCCTTCGGGGTGGTTTTTTTATGGCTCATTTTCGTAAATACCAAACAGCATGTTCT
AAAAATGTTAACAATGTCGG

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MFQILDIKGSINFLRHAAPISILSAILVVGSLVSLATRGINWGLDFTGGTVVEMEFSKPVNLETLRNNLTEPLVAGAVVQ
NFGSSRDVLVRLQVREGVKSDAQVRVVMAKATELDPEVTQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWR
LAAGSVAALAHDVIVTLGVFSVLQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKGTPEEVVNNSITQTMSRT
IITTGTTLITVVALFLKGGTLIHGFATALLLGIVVGTYSSIYVASYLAIRLGINREHMMPVEVEKEGADQPSIMP

Sequences:

>Translated_315_residues
MFQILDIKGSINFLRHAAPISILSAILVVGSLVSLATRGINWGLDFTGGTVVEMEFSKPVNLETLRNNLTEPLVAGAVVQ
NFGSSRDVLVRLQVREGVKSDAQVRVVMAKATELDPEVTQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWR
LAAGSVAALAHDVIVTLGVFSVLQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKGTPEEVVNNSITQTMSRT
IITTGTTLITVVALFLKGGTLIHGFATALLLGIVVGTYSSIYVASYLAIRLGINREHMMPVEVEKEGADQPSIMP
>Mature_315_residues
MFQILDIKGSINFLRHAAPISILSAILVVGSLVSLATRGINWGLDFTGGTVVEMEFSKPVNLETLRNNLTEPLVAGAVVQ
NFGSSRDVLVRLQVREGVKSDAQVRVVMAKATELDPEVTQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWR
LAAGSVAALAHDVIVTLGVFSVLQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKGTPEEVVNNSITQTMSRT
IITTGTTLITVVALFLKGGTLIHGFATALLLGIVVGTYSSIYVASYLAIRLGINREHMMPVEVEKEGADQPSIMP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=308, Percent_Identity=51.6233766233766, Blast_Score=328, Evalue=2e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34113; Mature: 34113

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQILDIKGSINFLRHAAPISILSAILVVGSLVSLATRGINWGLDFTGGTVVEMEFSKPV
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCC
NLETLRNNLTEPLVAGAVVQNFGSSRDVLVRLQVREGVKSDAQVRVVMAKATELDPEVTQ
CHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCEEEEEEEECCCCCHHHHH
KRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLAAGSVAALAHDVIVTLGVF
HHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHH
SVLQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKGTPEEVVNNSITQTMSRT
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IITTGTTLITVVALFLKGGTLIHGFATALLLGIVVGTYSSIYVASYLAIRLGINREHMMP
HHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
VEVEKEGADQPSIMP
EEECCCCCCCCCCCC
>Mature Secondary Structure
MFQILDIKGSINFLRHAAPISILSAILVVGSLVSLATRGINWGLDFTGGTVVEMEFSKPV
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCC
NLETLRNNLTEPLVAGAVVQNFGSSRDVLVRLQVREGVKSDAQVRVVMAKATELDPEVTQ
CHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCEEEEEEEECCCCCHHHHH
KRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLAAGSVAALAHDVIVTLGVF
HHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHH
SVLQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKGTPEEVVNNSITQTMSRT
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IITTGTTLITVVALFLKGGTLIHGFATALLLGIVVGTYSSIYVASYLAIRLGINREHMMP
HHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
VEVEKEGADQPSIMP
EEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]