| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is putP [H]
Identifier: 119775312
GI number: 119775312
Start: 2633235
End: 2634683
Strand: Direct
Name: putP [H]
Synonym: Sama_2177
Alternate gene names: 119775312
Gene position: 2633235-2634683 (Clockwise)
Preceding gene: 119775311
Following gene: 119775313
Centisome position: 61.15
GC content: 55.07
Gene sequence:
>1449_bases ATGAGCATAGATACACCTATTTTAGTCACCTTTGTGGGCTATTTAGCCCTGATGATGGGGATAGGATTCTGGGCCTACAA GGCCACAGACTCCGTTGATGATTACATTCTTGGTGGCCGCAAAATGGGCCCGGGCGTAACCGCTCTGAGTGTGGGCGCCT CTGATATGTCCGGCTGGTTGTTGCTGGGTTTGCCCGGTGCTGTTTACCTTGGTGGTCTCGGTGAAGCCTGGATTGGTATT GGCCTGGTGATTGGCGCCTGGTTGAACTGGCTCTTTGTGGCAAAGCGCCTGCGTATATACACCCAGCTTGCCGATAACGC CCTGACTCTTCCAGACTTTTTCGAAAAACGCTTCCACGATAAAGCGGGTCTGCTGCGCTTTGTCTCTGCCCTGACCATAC TGGTATTTTTTACCTTTTATGCCTCCTCGGGCATGGTGGGCGGCGCCATTCTGTTCGAAAAGGTATTTGGTCTGGATTAC ACCGCCGCCCTGGTGATAGGTTCTGCTATCATCGTCGGCTACACCTTTGTGGGTGGATTTTTCGCCGTAAGCTGGACCGA TTTTTTCCAGGGCTGTTTGATGCTGATTGCCCTGCTGATTGTTCCCATGGCCATTTTTACCAACAGCGAGAGCCACGCCA GCATTGACACCCTCTCACCGGAAATGCTGTCCCTGATTGGCGAAGGCACCACACTCATGGGCGTCGCCTCCCTGATGGCT TGGGGCCTGGGGTATTTTGGCCAGCCCCACATTTTGTCACGCTTTATGGCCATTGAGCGCCCGGAGCATTTGCCGGTGTC ACGCCGCATTGCCATGAGCTGGATGATAGTGTCCCTAATGGGGGCATTGGCCACTGGCCTTGCCGGCAGCCTCTATTTTG CCAAAGAACCGCTCGCCAATGCCGAGACCGTCTTTATTCATCTGGCTCAGGTGGCGTTCAATCCCTGGATTGCGGGCCTG CTCATTGCCGCCATTCTGTCGGCTATTATGAGCACCATCGACTCCCAACTGCTGGTGTGTTCCAGCGTGGTGACCGAAGA CTTCTATCGCAAGCTGCGCCCCAAGGCCGATGACAATGAACTAATGCGTGTCGGTCGTATCGGAGTGCTGGCCATCGCTA TCATCGCCGGCGTCGTGGCATTGGATCCCCAAAGCAGTGTGCTCGGGCTGGTGAGCTATGCCTGGGCCGGATTTGGTGCA GCCTTCGGCCCTGTGGTGCTCTTGTCGCTGTTTTGGCGTGGCTACAGCAAAACAGGAGCTCTGGCGACTATCATCACAGG TGCAGTAACGGTAGTGGTATGGAAACAGCTCAGTGGCGGCTTCTTTGATCTGTACGAAATACTGCCCGGCTTTATTCTGG CCACACTGGCCGGGGTGCTCATCAGCTTGGTCGCACCAGCAAATGACAGTGTCCGGGCCGAGTTTGACAGCTTCCAAAGC AAACTCTGA
Upstream 100 bases:
>100_bases ATATGCATCACAACTCCTGCGGCAATTGGGATCCGACCCAAACTTCTGATAGCATGCGTTGGCGAAAGTATTCCAATAAA AAACCTATGGTTGACACAGC
Downstream 100 bases:
>100_bases TAGCCCGTTTCAATCCACACATCCAAAAAAGCGTACACATGTACGCTTTTTTATTGGGTGAAGTGTAAGTTTTTGTATCT CAGCGCCTTGAACCGCTCAC
Product: sodium/proline symporter
Products: NA
Alternate protein names: Proline permease; Propionate transporter [H]
Number of amino acids: Translated: 482; Mature: 481
Protein sequence:
>482_residues MSIDTPILVTFVGYLALMMGIGFWAYKATDSVDDYILGGRKMGPGVTALSVGASDMSGWLLLGLPGAVYLGGLGEAWIGI GLVIGAWLNWLFVAKRLRIYTQLADNALTLPDFFEKRFHDKAGLLRFVSALTILVFFTFYASSGMVGGAILFEKVFGLDY TAALVIGSAIIVGYTFVGGFFAVSWTDFFQGCLMLIALLIVPMAIFTNSESHASIDTLSPEMLSLIGEGTTLMGVASLMA WGLGYFGQPHILSRFMAIERPEHLPVSRRIAMSWMIVSLMGALATGLAGSLYFAKEPLANAETVFIHLAQVAFNPWIAGL LIAAILSAIMSTIDSQLLVCSSVVTEDFYRKLRPKADDNELMRVGRIGVLAIAIIAGVVALDPQSSVLGLVSYAWAGFGA AFGPVVLLSLFWRGYSKTGALATIITGAVTVVVWKQLSGGFFDLYEILPGFILATLAGVLISLVAPANDSVRAEFDSFQS KL
Sequences:
>Translated_482_residues MSIDTPILVTFVGYLALMMGIGFWAYKATDSVDDYILGGRKMGPGVTALSVGASDMSGWLLLGLPGAVYLGGLGEAWIGI GLVIGAWLNWLFVAKRLRIYTQLADNALTLPDFFEKRFHDKAGLLRFVSALTILVFFTFYASSGMVGGAILFEKVFGLDY TAALVIGSAIIVGYTFVGGFFAVSWTDFFQGCLMLIALLIVPMAIFTNSESHASIDTLSPEMLSLIGEGTTLMGVASLMA WGLGYFGQPHILSRFMAIERPEHLPVSRRIAMSWMIVSLMGALATGLAGSLYFAKEPLANAETVFIHLAQVAFNPWIAGL LIAAILSAIMSTIDSQLLVCSSVVTEDFYRKLRPKADDNELMRVGRIGVLAIAIIAGVVALDPQSSVLGLVSYAWAGFGA AFGPVVLLSLFWRGYSKTGALATIITGAVTVVVWKQLSGGFFDLYEILPGFILATLAGVLISLVAPANDSVRAEFDSFQS KL >Mature_481_residues SIDTPILVTFVGYLALMMGIGFWAYKATDSVDDYILGGRKMGPGVTALSVGASDMSGWLLLGLPGAVYLGGLGEAWIGIG LVIGAWLNWLFVAKRLRIYTQLADNALTLPDFFEKRFHDKAGLLRFVSALTILVFFTFYASSGMVGGAILFEKVFGLDYT AALVIGSAIIVGYTFVGGFFAVSWTDFFQGCLMLIALLIVPMAIFTNSESHASIDTLSPEMLSLIGEGTTLMGVASLMAW GLGYFGQPHILSRFMAIERPEHLPVSRRIAMSWMIVSLMGALATGLAGSLYFAKEPLANAETVFIHLAQVAFNPWIAGLL IAAILSAIMSTIDSQLLVCSSVVTEDFYRKLRPKADDNELMRVGRIGVLAIAIIAGVVALDPQSSVLGLVSYAWAGFGAA FGPVVLLSLFWRGYSKTGALATIITGAVTVVVWKQLSGGFFDLYEILPGFILATLAGVLISLVAPANDSVRAEFDSFQSK L
Specific function: Catalyzes the sodium-dependent uptake of extracellular L-proline. This protein is also capable of using lithium as the transport cation. Also catalyzes the uptake of propionate [H]
COG id: COG0591
COG function: function code ER; Na+/proline symporter
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Homo sapiens, GI310128183, Length=483, Percent_Identity=47.2049689440994, Blast_Score=430, Evalue=1e-120, Organism=Homo sapiens, GI4507035, Length=374, Percent_Identity=24.8663101604278, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI110835708, Length=563, Percent_Identity=23.6234458259325, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI17941285, Length=408, Percent_Identity=24.5098039215686, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI11141885, Length=449, Percent_Identity=24.7216035634744, Blast_Score=69, Evalue=9e-12, Organism=Escherichia coli, GI1787251, Length=478, Percent_Identity=54.18410041841, Blast_Score=488, Evalue=1e-139, Organism=Escherichia coli, GI87082237, Length=456, Percent_Identity=28.9473684210526, Blast_Score=143, Evalue=2e-35, Organism=Escherichia coli, GI1790503, Length=448, Percent_Identity=25, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI1790113, Length=421, Percent_Identity=23.5154394299287, Blast_Score=63, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17539284, Length=210, Percent_Identity=28.0952380952381, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI221459584, Length=347, Percent_Identity=26.5129682997118, Blast_Score=85, Evalue=1e-16, Organism=Drosophila melanogaster, GI24645928, Length=380, Percent_Identity=29.7368421052632, Blast_Score=83, Evalue=4e-16, Organism=Drosophila melanogaster, GI24640370, Length=348, Percent_Identity=25.8620689655172, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI221459586, Length=373, Percent_Identity=25.201072386059, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI221459588, Length=375, Percent_Identity=25.0666666666667, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI24648033, Length=449, Percent_Identity=22.9398663697105, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI21356865, Length=449, Percent_Identity=22.9398663697105, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011851 - InterPro: IPR001734 - InterPro: IPR018212 - InterPro: IPR019900 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 51623; Mature: 51492
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS00456 NA_SOLUT_SYMP_1 ; PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIDTPILVTFVGYLALMMGIGFWAYKATDSVDDYILGGRKMGPGVTALSVGASDMSGWL CCCCCHHHHHHHHHHHHHHHCCHHHEECCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEE LLGLPGAVYLGGLGEAWIGIGLVIGAWLNWLFVAKRLRIYTQLADNALTLPDFFEKRFHD EEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH KAGLLRFVSALTILVFFTFYASSGMVGGAILFEKVFGLDYTAALVIGSAIIVGYTFVGGF HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH FAVSWTDFFQGCLMLIALLIVPMAIFTNSESHASIDTLSPEMLSLIGEGTTLMGVASLMA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHCCCHHHHHHHHHHH WGLGYFGQPHILSRFMAIERPEHLPVSRRIAMSWMIVSLMGALATGLAGSLYFAKEPLAN HHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC AETVFIHLAQVAFNPWIAGLLIAAILSAIMSTIDSQLLVCSSVVTEDFYRKLRPKADDNE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH LMRVGRIGVLAIAIIAGVVALDPQSSVLGLVSYAWAGFGAAFGPVVLLSLFWRGYSKTGA HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH LATIITGAVTVVVWKQLSGGFFDLYEILPGFILATLAGVLISLVAPANDSVRAEFDSFQS HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC KL CC >Mature Secondary Structure SIDTPILVTFVGYLALMMGIGFWAYKATDSVDDYILGGRKMGPGVTALSVGASDMSGWL CCCCHHHHHHHHHHHHHHHCCHHHEECCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEE LLGLPGAVYLGGLGEAWIGIGLVIGAWLNWLFVAKRLRIYTQLADNALTLPDFFEKRFHD EEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH KAGLLRFVSALTILVFFTFYASSGMVGGAILFEKVFGLDYTAALVIGSAIIVGYTFVGGF HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH FAVSWTDFFQGCLMLIALLIVPMAIFTNSESHASIDTLSPEMLSLIGEGTTLMGVASLMA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHCCCHHHHHHHHHHH WGLGYFGQPHILSRFMAIERPEHLPVSRRIAMSWMIVSLMGALATGLAGSLYFAKEPLAN HHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC AETVFIHLAQVAFNPWIAGLLIAAILSAIMSTIDSQLLVCSSVVTEDFYRKLRPKADDNE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH LMRVGRIGVLAIAIIAGVVALDPQSSVLGLVSYAWAGFGAAFGPVVLLSLFWRGYSKTGA HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH LATIITGAVTVVVWKQLSGGFFDLYEILPGFILATLAGVLISLVAPANDSVRAEFDSFQS HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC KL CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3302614; 8905232; 9278503; 1400239; 3325781; 3053687; 3053649; 1567896; 8119910 [H]