Click here to switch to the map view.

The map label for this gene is yfcN [C]

Identifier: 119775296

GI number: 119775296

Start: 2610899

End: 2611429

Strand: Direct

Name: yfcN [C]

Synonym: Sama_2161

Alternate gene names: 119775296

Gene position: 2610899-2611429 (Clockwise)

Preceding gene: 119775290

Following gene: 119775298

Centisome position: 60.63

GC content: 57.44

Gene sequence:

>531_bases
ATGACTAAGATTATCTCCCACGAAGGCCTGGAGGATTTTCAGGCGCTGGTCGATGGCATTCGCCCTCTGACCCAGGACAA
ACAACACTTTGGCACGCCGCTGAAAACCAAGGCCGAGCTCACGGAGCAGGCGCCACAGCTCGCGGCCAATCATTATTTCT
CCGATACCTTTCAGCCGCTATTGCCGGTAGATGGCCCCATGCGCTGGCGTGCCGAACATGCGGATAATCTGGTGCTTAAA
CGCTTGCGCCGGGGCGATTATGTGCCTGATTTGATTTTGGATGTGCACGGCATGCGTCAAACTGAGGCCAAGCTTGAACT
TGCAGCGCTTATTGAAGCGGCCATTCGCGAGCAGTGCCAGTGTGTGAGTGTGATGCACGGCTATGGCACTGGAGTGCTGA
AACAGCAGATCCCCCTGTGGCTGGCACAGCATCCCAAGGTGTTGGGATTTCATCAGGCCCCCAAAGAATGGGGCGGCGAT
GCCGCACTGCTGGTGTTGATTGACCTGGGCGACCAGCCCCACCGGCGCTGA

Upstream 100 bases:

>100_bases
ATCAACAAATATCTTATCCAAAACAAGCTCCCGCTCTAAGGTTTGCGGGCATTGTAACTGAACTCTGTTCTCTTGGCACA
GGATTCAATAAAATAGCGCC

Downstream 100 bases:

>100_bases
CCAACCCGCGTTGCAAAAGGCGATGAAGCTCAATCAGCAACCCAGACTCAGGGCCTTATCAACAAAAAAGCAGCCGGATG
GCTGCTTTGCTCGATAAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MTKIISHEGLEDFQALVDGIRPLTQDKQHFGTPLKTKAELTEQAPQLAANHYFSDTFQPLLPVDGPMRWRAEHADNLVLK
RLRRGDYVPDLILDVHGMRQTEAKLELAALIEAAIREQCQCVSVMHGYGTGVLKQQIPLWLAQHPKVLGFHQAPKEWGGD
AALLVLIDLGDQPHRR

Sequences:

>Translated_176_residues
MTKIISHEGLEDFQALVDGIRPLTQDKQHFGTPLKTKAELTEQAPQLAANHYFSDTFQPLLPVDGPMRWRAEHADNLVLK
RLRRGDYVPDLILDVHGMRQTEAKLELAALIEAAIREQCQCVSVMHGYGTGVLKQQIPLWLAQHPKVLGFHQAPKEWGGD
AALLVLIDLGDQPHRR
>Mature_175_residues
TKIISHEGLEDFQALVDGIRPLTQDKQHFGTPLKTKAELTEQAPQLAANHYFSDTFQPLLPVDGPMRWRAEHADNLVLKR
LRRGDYVPDLILDVHGMRQTEAKLELAALIEAAIREQCQCVSVMHGYGTGVLKQQIPLWLAQHPKVLGFHQAPKEWGGDA
ALLVLIDLGDQPHRR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1788671, Length=173, Percent_Identity=49.1329479768786, Blast_Score=159, Evalue=7e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 19807; Mature: 19676

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIISHEGLEDFQALVDGIRPLTQDKQHFGTPLKTKAELTEQAPQLAANHYFSDTFQPL
CCCCCCCCCHHHHHHHHHHHCCHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
LPVDGPMRWRAEHADNLVLKRLRRGDYVPDLILDVHGMRQTEAKLELAALIEAAIREQCQ
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
CVSVMHGYGTGVLKQQIPLWLAQHPKVLGFHQAPKEWGGDAALLVLIDLGDQPHRR
HHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCHHHHCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure 
TKIISHEGLEDFQALVDGIRPLTQDKQHFGTPLKTKAELTEQAPQLAANHYFSDTFQPL
CCCCCCCCHHHHHHHHHHHCCHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
LPVDGPMRWRAEHADNLVLKRLRRGDYVPDLILDVHGMRQTEAKLELAALIEAAIREQCQ
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
CVSVMHGYGTGVLKQQIPLWLAQHPKVLGFHQAPKEWGGDAALLVLIDLGDQPHRR
HHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCHHHHCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA