BacMap

Definition	Shewanella amazonensis SB2B chromosome, complete genome.
Accession	NC_008700
Length	4,306,142

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The map label for this gene is 119775247

Identifier: 119775247

GI number: 119775247

Start: 2554709

End: 2555596

Strand: Reverse

Name: 119775247

Synonym: Sama_2112

Alternate gene names: NA

Gene position: 2555596-2554709 (Counterclockwise)

Preceding gene: 119775253

Following gene: 119775246

Centisome position: 59.35

GC content: 50.68

Gene sequence:

>888_bases
ATGGCACACTGTGGAGCGATTCAGACCCATTCCAAGGACTTCAGGGAACCCATGAGCCAACCCCAGGCCGATGCTGAGAG
TGAACTCAAGAAAAAACTCAGGATAATCATTTTTGGCACAGATACACCGGCGGGCCGCTGGTTCGACTTGGCACTCATCC
TGTGCATCATTGCCAGTGTGACTCTGGTACTGCTGGATACTGTCTCCAGCATCAACGCCCGCTGGGGCGGGCTTATTCAT
GTTCTTGAGTGGATTTTCACCGTCATTTTTACCCTGGAATACGGCATCAGGATTTATTGCAGCGCCCATCGCTGGCAGTA
CGCCCACAGTTTTTACGGCATAGTGGATCTCTTGTCTGTGTTGCCAAGTTATCTCGCGCTGTTTTTCCCGGGGGCCAATT
TCACCCTCATCATCCGGGTGCTCAGGCTGTTCAGAATATTCAGGGTGCTCAAGCTCTTGAGATACCTCAGTGAAGGGAAT
CTGCTGCTCAAGGCCATGATGCAGTCCAGTCGTAAGGTGTTTCTGTTTTTCTTCTCCGTCAGCCTGATCATCATGGTGCT
CAGCGCCATCATGTATATGGTTGAAGGCCCCGAAAATGGGTTTTCGTCCATTCCCAAGTCTATCTACTGGACCATAGTGA
CCATTACCACTGTGGGTTATGGGGATATTACGCCTAAGACAGAGTTGGGCCAGGCGATAGCAGCACTGACCATGCTGATA
GGTTACTCGATTATTGCTATTCCAACGGGCATACTCACCGCGGAAATTTCTCAGGAGATTGGCCGGCACCGGGATCTGAG
ACGTTGCAGTAACTGTTTGAAAACCGGTCATGATCAAGACGCCGAATACTGCAATAAGTGTGGCAGCGAGCTGCAAAAAG
AGCCGTAA

Upstream 100 bases:

>100_bases
ACCATTATTCTATGCACAAGACGTGCTGAATCGAATTCTACCCAAGGCTGCGGCAGCTGAAAACTGCATTGAGAATTGTT
TTTGAGCCAGAGGGATTGCC

Downstream 100 bases:

>100_bases
CAGGACCCATAATGACCCAAGCTAAATTTGTTGAAGGGCCGATACTGCGCCACATATTGGTGATGAGCTCCACCGCTGCG
GTGGGCATTTCGGCACTGTT

Product: ion transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MAHCGAIQTHSKDFREPMSQPQADAESELKKKLRIIIFGTDTPAGRWFDLALILCIIASVTLVLLDTVSSINARWGGLIH
VLEWIFTVIFTLEYGIRIYCSAHRWQYAHSFYGIVDLLSVLPSYLALFFPGANFTLIIRVLRLFRIFRVLKLLRYLSEGN
LLLKAMMQSSRKVFLFFFSVSLIIMVLSAIMYMVEGPENGFSSIPKSIYWTIVTITTVGYGDITPKTELGQAIAALTMLI
GYSIIAIPTGILTAEISQEIGRHRDLRRCSNCLKTGHDQDAEYCNKCGSELQKEP

Sequences:

>Translated_295_residues
MAHCGAIQTHSKDFREPMSQPQADAESELKKKLRIIIFGTDTPAGRWFDLALILCIIASVTLVLLDTVSSINARWGGLIH
VLEWIFTVIFTLEYGIRIYCSAHRWQYAHSFYGIVDLLSVLPSYLALFFPGANFTLIIRVLRLFRIFRVLKLLRYLSEGN
LLLKAMMQSSRKVFLFFFSVSLIIMVLSAIMYMVEGPENGFSSIPKSIYWTIVTITTVGYGDITPKTELGQAIAALTMLI
GYSIIAIPTGILTAEISQEIGRHRDLRRCSNCLKTGHDQDAEYCNKCGSELQKEP
>Mature_294_residues
AHCGAIQTHSKDFREPMSQPQADAESELKKKLRIIIFGTDTPAGRWFDLALILCIIASVTLVLLDTVSSINARWGGLIHV
LEWIFTVIFTLEYGIRIYCSAHRWQYAHSFYGIVDLLSVLPSYLALFFPGANFTLIIRVLRLFRIFRVLKLLRYLSEGNL
LLKAMMQSSRKVFLFFFSVSLIIMVLSAIMYMVEGPENGFSSIPKSIYWTIVTITTVGYGDITPKTELGQAIAALTMLIG
YSIIAIPTGILTAEISQEIGRHRDLRRCSNCLKTGHDQDAEYCNKCGSELQKEP

Specific function: Unknown

COG id: COG1226

COG function: function code P; Kef-type K+ transport systems, predicted NAD-binding component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cyclic nucleotide-binding domain [H]

Homologues:

Organism=Homo sapiens, GI20070166, Length=272, Percent_Identity=32.3529411764706, Blast_Score=121, Evalue=8e-28,
Organism=Homo sapiens, GI27436974, Length=191, Percent_Identity=32.4607329842932, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI4826784, Length=191, Percent_Identity=32.4607329842932, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI27436984, Length=201, Percent_Identity=29.8507462686567, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI27436986, Length=201, Percent_Identity=29.8507462686567, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI9789987, Length=201, Percent_Identity=29.8507462686567, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI27436981, Length=175, Percent_Identity=31.4285714285714, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI88758565, Length=227, Percent_Identity=26.431718061674, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI45383011, Length=254, Percent_Identity=27.5590551181102, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI25952087, Length=203, Percent_Identity=27.5862068965517, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI4504817, Length=249, Percent_Identity=25.7028112449799, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI13492973, Length=200, Percent_Identity=30, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI26051268, Length=283, Percent_Identity=25.4416961130742, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI26638655, Length=236, Percent_Identity=27.5423728813559, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI26638653, Length=236, Percent_Identity=27.5423728813559, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI26051266, Length=237, Percent_Identity=26.5822784810127, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI26051260, Length=237, Percent_Identity=26.5822784810127, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI26051262, Length=237, Percent_Identity=26.5822784810127, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI26051264, Length=237, Percent_Identity=26.5822784810127, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI19424136, Length=228, Percent_Identity=30.7017543859649, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI25952108, Length=194, Percent_Identity=28.8659793814433, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI27436988, Length=190, Percent_Identity=27.8947368421053, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI4826782, Length=194, Percent_Identity=25.7731958762887, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI119395748, Length=190, Percent_Identity=26.3157894736842, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI27436996, Length=190, Percent_Identity=30, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI25952092, Length=215, Percent_Identity=26.9767441860465, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI88758576, Length=188, Percent_Identity=28.1914893617021, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI4504821, Length=198, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI7657289, Length=275, Percent_Identity=27.6363636363636, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI5031819, Length=123, Percent_Identity=34.9593495934959, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI24497462, Length=188, Percent_Identity=28.1914893617021, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI236462242, Length=207, Percent_Identity=27.536231884058, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI236461719, Length=207, Percent_Identity=27.536231884058, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI236462079, Length=207, Percent_Identity=27.536231884058, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI236461942, Length=207, Percent_Identity=27.536231884058, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI28373065, Length=207, Percent_Identity=27.536231884058, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI24497458, Length=188, Percent_Identity=27.6595744680851, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI21217561, Length=188, Percent_Identity=27.6595744680851, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI21217563, Length=188, Percent_Identity=27.6595744680851, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI27436993, Length=183, Percent_Identity=28.4153005464481, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI19071574, Length=182, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI4758630, Length=284, Percent_Identity=25.3521126760563, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI24497460, Length=204, Percent_Identity=26.4705882352941, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI163792201, Length=188, Percent_Identity=26.5957446808511, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI4826786, Length=188, Percent_Identity=26.5957446808511, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI32479527, Length=242, Percent_Identity=24.3801652892562, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI32479525, Length=240, Percent_Identity=25.8333333333333, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI6912444, Length=183, Percent_Identity=27.3224043715847, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994313, Length=204, Percent_Identity=34.8039215686275, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17544122, Length=219, Percent_Identity=27.3972602739726, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71994134, Length=194, Percent_Identity=32.4742268041237, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71989381, Length=184, Percent_Identity=33.1521739130435, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71989369, Length=184, Percent_Identity=33.1521739130435, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71989376, Length=184, Percent_Identity=33.1521739130435, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71989361, Length=184, Percent_Identity=33.1521739130435, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71994320, Length=168, Percent_Identity=37.5, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI193206869, Length=216, Percent_Identity=28.7037037037037, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI25148255, Length=190, Percent_Identity=27.3684210526316, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI32564088, Length=190, Percent_Identity=30, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI32564076, Length=190, Percent_Identity=30, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI32564084, Length=190, Percent_Identity=30, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI32564086, Length=190, Percent_Identity=30, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI32564090, Length=190, Percent_Identity=30, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI32564082, Length=190, Percent_Identity=30, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI32564080, Length=190, Percent_Identity=30, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI25147242, Length=230, Percent_Identity=24.7826086956522, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI25147238, Length=230, Percent_Identity=24.7826086956522, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI72000220, Length=195, Percent_Identity=29.2307692307692, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17569273, Length=183, Percent_Identity=28.9617486338798, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71986008, Length=186, Percent_Identity=30.1075268817204, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71986011, Length=186, Percent_Identity=30.1075268817204, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71986003, Length=186, Percent_Identity=30.1075268817204, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI32564066, Length=241, Percent_Identity=24.896265560166, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71985535, Length=194, Percent_Identity=31.4432989690722, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI193207406, Length=203, Percent_Identity=30.0492610837438, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI115532628, Length=201, Percent_Identity=29.8507462686567, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71998749, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI32564068, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI32564070, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI32564074, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI32564072, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71986574, Length=189, Percent_Identity=28.042328042328, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007764, Length=295, Percent_Identity=27.4576271186441, Blast_Score=107, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24656294, Length=295, Percent_Identity=27.4576271186441, Blast_Score=107, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24656289, Length=295, Percent_Identity=27.4576271186441, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI281365536, Length=295, Percent_Identity=27.4576271186441, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI161084970, Length=189, Percent_Identity=30.1587301587302, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI17737641, Length=189, Percent_Identity=30.1587301587302, Blast_Score=104, Evalue=9e-23,
Organism=Drosophila melanogaster, GI17136468, Length=184, Percent_Identity=30.9782608695652, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI161076829, Length=180, Percent_Identity=32.2222222222222, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI221330674, Length=184, Percent_Identity=30.9782608695652, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI28574020, Length=184, Percent_Identity=30.9782608695652, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI45555859, Length=225, Percent_Identity=25.7777777777778, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI45549143, Length=225, Percent_Identity=25.7777777777778, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24642910, Length=225, Percent_Identity=25.7777777777778, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24642916, Length=225, Percent_Identity=25.7777777777778, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24642914, Length=225, Percent_Identity=25.7777777777778, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI221330117, Length=239, Percent_Identity=23.8493723849372, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI281363095, Length=219, Percent_Identity=24.6575342465753, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI221330119, Length=239, Percent_Identity=23.8493723849372, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI281363097, Length=219, Percent_Identity=24.6575342465753, Blast_Score=82, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018490
- InterPro:   IPR018488
- InterPro:   IPR000595
- InterPro:   IPR005821
- InterPro:   IPR003091
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00027 cNMP_binding; PF00520 Ion_trans [H]

EC number: NA

Molecular weight: Translated: 33259; Mature: 33127

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHCGAIQTHSKDFREPMSQPQADAESELKKKLRIIIFGTDTPAGRWFDLALILCIIASV
CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHH
TLVLLDTVSSINARWGGLIHVLEWIFTVIFTLEYGIRIYCSAHRWQYAHSFYGIVDLLSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHH
LPSYLALFFPGANFTLIIRVLRLFRIFRVLKLLRYLSEGNLLLKAMMQSSRKVFLFFFSV
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHH
SLIIMVLSAIMYMVEGPENGFSSIPKSIYWTIVTITTVGYGDITPKTELGQAIAALTMLI
HHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHH
GYSIIAIPTGILTAEISQEIGRHRDLRRCSNCLKTGHDQDAEYCNKCGSELQKEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AHCGAIQTHSKDFREPMSQPQADAESELKKKLRIIIFGTDTPAGRWFDLALILCIIASV
CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHH
TLVLLDTVSSINARWGGLIHVLEWIFTVIFTLEYGIRIYCSAHRWQYAHSFYGIVDLLSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHH
LPSYLALFFPGANFTLIIRVLRLFRIFRVLKLLRYLSEGNLLLKAMMQSSRKVFLFFFSV
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHH
SLIIMVLSAIMYMVEGPENGFSSIPKSIYWTIVTITTVGYGDITPKTELGQAIAALTMLI
HHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHH
GYSIIAIPTGILTAEISQEIGRHRDLRRCSNCLKTGHDQDAEYCNKCGSELQKEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1522059 [H]