| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is f1pep1 [H]
Identifier: 119775226
GI number: 119775226
Start: 2533646
End: 2535802
Strand: Reverse
Name: f1pep1 [H]
Synonym: Sama_2091
Alternate gene names: 119775226
Gene position: 2535802-2533646 (Counterclockwise)
Preceding gene: 119775227
Following gene: 119775225
Centisome position: 58.89
GC content: 52.62
Gene sequence:
>2157_bases ATGACAAGCAGAATCAGCACTCTAAGCCTGCTGACCCTGGGCTTTGCCCTGGGATTATCAGGCTGTCACACCAAAGACGC GACCGTAGACGCCCCCGTGGCGGCTATCGCTTATCCTGCCAGCCAAACGGTTGCCATAAGCGAACAAATCCACGGCGTTG AAGTGCAAGACCCTTATCGCTGGCTCGAAGAAAGCAGCCCTGAGACTGAGGATTGGGTCAAACGGCAACAGGCTTTTGGT GAAGAATACCTTGCCGCCATCCCCAATAAACAAGTGGTGGTTGACCGCATTACCGAGCTGTGGAACTTTGAGAAAGTTGG TGCACCTTTTGAGCACGGTGAAAATCGCTTTATATTCAGAAACAATGGCCTTCAATCACAAAACGTACTTTATGTGAGTG AAAAGGGAGGTGATGAGCGGGTGTTGCTTGACCCCAATACGCTTTCAGCCGATGGCACTGTGGCCCTGTCCGGCGTCTCC GTAAGCGGTGATGGCAAAACGCTGGCTTACGGCGTCTCCAAGTCAGGCTCCGACTGGCAGGAGTGGGCCTTTATCGATGT GGCCACCGGTCGCAAGTTGGCCGACAGCCTGAACTGGATCAAATTTTCCCGTGCCGAATGGGCCCATGACAACAGTGGCG TGTACTACTCTCGTTACGATGCGCCGGCTGGCGGCGATATCCTGGTCGATGTGAACTACAACCAGAAGGTGTATTTCCAT CGTATTGGCGACGAGCAGGCCAAGGATACCCTGGTATACGAGCGCCCTGATCAACCAGAGTGGGGCTTTTCGTCCACGGT GTCCGATGATGGTAACTTCTTGCTGATCAGCGTGTCAGTCGGTACAGACAGCCGCAATCGCTTTTTCTATAAACCACTGA AAGATAAAAGTCTTAAAGTAGTTGAGTTGATGAGCGAACTGGAAGCTGAATACCAGTTCCTCGGCAATGAAGGTCCGGTG TTCTACTTTAAGACCGATTTGGACGCACCAAGAGGTCGCATCATCGCCGTAGATACCCGCAATCCCGCCAAAGACAATTG GCGTACCCTGGTACCAGAATCTCAGGACCCCATCGCTGAAGTCAGTATCATCAGCGAACACCTGGTGGTGAGTTACCTGC ACGATGTGTTGGGTCAATTGTCCATTTACAACATGGATGGCGTAAAGCGTGAAGATGTGCCGCTGCCGGGTAAGGGCAAG ATTGCCGGTCCCTACGGCAAGGCCAGCAAGCCTTACTTTTATTACATCTTCAACAGCTATGTACAGCCTCAGACCATCTA CAAGTACGATCTGAATAAGGGCACCAATGAGGTGTTCAGTGCGCCCAAGGTATCCTTCAATCCGGATGACTATGTGTCTG AGCAGGTGTTCTACACCAGCAAAGACGGTACCCGCATCCCCATGCTGGTCAGTTATAAGAAGGGCCTGAAGAAAGACGGT AAAAATCCAACGCTGCTATATGCCTACGGCGGTTTCTCCATCTCCATGACCCCACGCTTCAGCCCGGCCACCATAGCCTG GCTGGACATGGGCGGCATTTATGCGGTGCCGGCCCTGCGTGGTGGCAGCGAATACGGTGAAGAGTGGCACAAGGCCGGTA TGTTCGGTAAAAAGCAAAACGTGTTTGACGACTATTTTGCTGCTGCCGAATATCTCATCAGCGAAAATTACACCAACAGC AGCAAGCTTGGCGCCTATGGTCGCAGTAATGGTGGCCTCTTGATGGGCGCAGCCGTAACCCAGAGACCCGATTTGTTTGC CGCCATCCTGCCTGCAGTGGGTGTACTGGATATGCTGCGCTTCCAAAAGTTCACCATAGGTTGGGCCTGGACGGCAGAAT ATGGCAGTGCGGACAATGCCGAAGATTTTCCATACCTGCTGGCGTATTCGCCTTATCACAATGTGAAAGCGCAGACCTAT CCTGCCACCATGGTGATGACAGCCGACCATGACGATCGCGTAGTACCGCTGCATAGCTTCAAGTTTGGTGCCATGCTGCA GGCCAAACAGCAGGGACAAGCGCCTGTGATTATGCGAATTGAATCAAAGGCTGGCCATGGTGCCGGTAAACCCACGGCGA TGCAGATTGCCGAGTTTGCCGACATCTATGCGTTTTTGTGGCAAAACTTCGGTTTAACCCTGCCAACTGAACTCTGA
Upstream 100 bases:
>100_bases CGAAAGTTTCGCCACCATGTTTACCCGCCATTGCCACCTCCATTTTTGGGGGTATAGTGAGCAGCGGCAATGCACCTCTC TACTGCAAAGGAAGACAACA
Downstream 100 bases:
>100_bases ACGCAAAACGCACAAAAAATGCGTTGATACAAGGGGCTTTGGCCCCTTTTATCATTTATTTTTCTTTACAGTTGGCGGGG GAGCGGCCATTCACAATCCC
Product: prolyl oligopeptidase
Products: NA
Alternate protein names: Post-proline cleaving enzyme; Proline-specific endopeptidase; PE; PSE [H]
Number of amino acids: Translated: 718; Mature: 717
Protein sequence:
>718_residues MTSRISTLSLLTLGFALGLSGCHTKDATVDAPVAAIAYPASQTVAISEQIHGVEVQDPYRWLEESSPETEDWVKRQQAFG EEYLAAIPNKQVVVDRITELWNFEKVGAPFEHGENRFIFRNNGLQSQNVLYVSEKGGDERVLLDPNTLSADGTVALSGVS VSGDGKTLAYGVSKSGSDWQEWAFIDVATGRKLADSLNWIKFSRAEWAHDNSGVYYSRYDAPAGGDILVDVNYNQKVYFH RIGDEQAKDTLVYERPDQPEWGFSSTVSDDGNFLLISVSVGTDSRNRFFYKPLKDKSLKVVELMSELEAEYQFLGNEGPV FYFKTDLDAPRGRIIAVDTRNPAKDNWRTLVPESQDPIAEVSIISEHLVVSYLHDVLGQLSIYNMDGVKREDVPLPGKGK IAGPYGKASKPYFYYIFNSYVQPQTIYKYDLNKGTNEVFSAPKVSFNPDDYVSEQVFYTSKDGTRIPMLVSYKKGLKKDG KNPTLLYAYGGFSISMTPRFSPATIAWLDMGGIYAVPALRGGSEYGEEWHKAGMFGKKQNVFDDYFAAAEYLISENYTNS SKLGAYGRSNGGLLMGAAVTQRPDLFAAILPAVGVLDMLRFQKFTIGWAWTAEYGSADNAEDFPYLLAYSPYHNVKAQTY PATMVMTADHDDRVVPLHSFKFGAMLQAKQQGQAPVIMRIESKAGHGAGKPTAMQIAEFADIYAFLWQNFGLTLPTEL
Sequences:
>Translated_718_residues MTSRISTLSLLTLGFALGLSGCHTKDATVDAPVAAIAYPASQTVAISEQIHGVEVQDPYRWLEESSPETEDWVKRQQAFG EEYLAAIPNKQVVVDRITELWNFEKVGAPFEHGENRFIFRNNGLQSQNVLYVSEKGGDERVLLDPNTLSADGTVALSGVS VSGDGKTLAYGVSKSGSDWQEWAFIDVATGRKLADSLNWIKFSRAEWAHDNSGVYYSRYDAPAGGDILVDVNYNQKVYFH RIGDEQAKDTLVYERPDQPEWGFSSTVSDDGNFLLISVSVGTDSRNRFFYKPLKDKSLKVVELMSELEAEYQFLGNEGPV FYFKTDLDAPRGRIIAVDTRNPAKDNWRTLVPESQDPIAEVSIISEHLVVSYLHDVLGQLSIYNMDGVKREDVPLPGKGK IAGPYGKASKPYFYYIFNSYVQPQTIYKYDLNKGTNEVFSAPKVSFNPDDYVSEQVFYTSKDGTRIPMLVSYKKGLKKDG KNPTLLYAYGGFSISMTPRFSPATIAWLDMGGIYAVPALRGGSEYGEEWHKAGMFGKKQNVFDDYFAAAEYLISENYTNS SKLGAYGRSNGGLLMGAAVTQRPDLFAAILPAVGVLDMLRFQKFTIGWAWTAEYGSADNAEDFPYLLAYSPYHNVKAQTY PATMVMTADHDDRVVPLHSFKFGAMLQAKQQGQAPVIMRIESKAGHGAGKPTAMQIAEFADIYAFLWQNFGLTLPTEL >Mature_717_residues TSRISTLSLLTLGFALGLSGCHTKDATVDAPVAAIAYPASQTVAISEQIHGVEVQDPYRWLEESSPETEDWVKRQQAFGE EYLAAIPNKQVVVDRITELWNFEKVGAPFEHGENRFIFRNNGLQSQNVLYVSEKGGDERVLLDPNTLSADGTVALSGVSV SGDGKTLAYGVSKSGSDWQEWAFIDVATGRKLADSLNWIKFSRAEWAHDNSGVYYSRYDAPAGGDILVDVNYNQKVYFHR IGDEQAKDTLVYERPDQPEWGFSSTVSDDGNFLLISVSVGTDSRNRFFYKPLKDKSLKVVELMSELEAEYQFLGNEGPVF YFKTDLDAPRGRIIAVDTRNPAKDNWRTLVPESQDPIAEVSIISEHLVVSYLHDVLGQLSIYNMDGVKREDVPLPGKGKI AGPYGKASKPYFYYIFNSYVQPQTIYKYDLNKGTNEVFSAPKVSFNPDDYVSEQVFYTSKDGTRIPMLVSYKKGLKKDGK NPTLLYAYGGFSISMTPRFSPATIAWLDMGGIYAVPALRGGSEYGEEWHKAGMFGKKQNVFDDYFAAAEYLISENYTNSS KLGAYGRSNGGLLMGAAVTQRPDLFAAILPAVGVLDMLRFQKFTIGWAWTAEYGSADNAEDFPYLLAYSPYHNVKAQTYP ATMVMTADHDDRVVPLHSFKFGAMLQAKQQGQAPVIMRIESKAGHGAGKPTAMQIAEFADIYAFLWQNFGLTLPTEL
Specific function: Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond [H]
COG id: COG1505
COG function: function code E; Serine proteases of the peptidase family S9A
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9A family [H]
Homologues:
Organism=Homo sapiens, GI41349456, Length=682, Percent_Identity=43.9882697947214, Blast_Score=567, Evalue=1e-161, Organism=Homo sapiens, GI108860686, Length=271, Percent_Identity=29.1512915129151, Blast_Score=100, Evalue=7e-21, Organism=Homo sapiens, GI284172438, Length=271, Percent_Identity=29.1512915129151, Blast_Score=100, Evalue=7e-21, Organism=Homo sapiens, GI284172431, Length=271, Percent_Identity=29.1512915129151, Blast_Score=100, Evalue=7e-21, Organism=Homo sapiens, GI284172420, Length=271, Percent_Identity=29.1512915129151, Blast_Score=100, Evalue=8e-21, Organism=Homo sapiens, GI284172413, Length=271, Percent_Identity=29.1512915129151, Blast_Score=100, Evalue=8e-21, Organism=Homo sapiens, GI70778815, Length=271, Percent_Identity=29.1512915129151, Blast_Score=100, Evalue=8e-21, Organism=Homo sapiens, GI108860692, Length=270, Percent_Identity=28.8888888888889, Blast_Score=99, Evalue=2e-20, Organism=Escherichia coli, GI1788150, Length=701, Percent_Identity=25.5349500713267, Blast_Score=201, Evalue=1e-52, Organism=Drosophila melanogaster, GI24583414, Length=712, Percent_Identity=42.2752808988764, Blast_Score=548, Evalue=1e-156, Organism=Drosophila melanogaster, GI221510989, Length=708, Percent_Identity=39.2655367231638, Blast_Score=505, Evalue=1e-143,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002471 - InterPro: IPR001375 - InterPro: IPR002470 - InterPro: IPR004106 [H]
Pfam domain/function: PF00326 Peptidase_S9; PF02897 Peptidase_S9_N [H]
EC number: =3.4.21.26 [H]
Molecular weight: Translated: 79805; Mature: 79674
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00708 PRO_ENDOPEP_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRISTLSLLTLGFALGLSGCHTKDATVDAPVAAIAYPASQTVAISEQIHGVEVQDPYR CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEECCHHH WLEESSPETEDWVKRQQAFGEEYLAAIPNKQVVVDRITELWNFEKVGAPFEHGENRFIFR HHHCCCCCHHHHHHHHHHHCHHHHHHCCCCEEHHHHHHHHHCHHHCCCCHHCCCCEEEEE NNGLQSQNVLYVSEKGGDERVLLDPNTLSADGTVALSGVSVSGDGKTLAYGVSKSGSDWQ CCCCCCCCEEEEECCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHH EWAFIDVATGRKLADSLNWIKFSRAEWAHDNSGVYYSRYDAPAGGDILVDVNYNQKVYFH HEEEEEECCCCHHHHCCCCEEECCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCEEEEE RIGDEQAKDTLVYERPDQPEWGFSSTVSDDGNFLLISVSVGTDSRNRFFYKPLKDKSLKV ECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCHHH VELMSELEAEYQFLGNEGPVFYFKTDLDAPRGRIIAVDTRNPAKDNWRTLVPESQDPIAE HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCEECCCCCCCCHHH VSIISEHLVVSYLHDVLGQLSIYNMDGVKREDVPLPGKGKIAGPYGKASKPYFYYIFNSY HHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC VQPQTIYKYDLNKGTNEVFSAPKVSFNPDDYVSEQVFYTSKDGTRIPMLVSYKKGLKKDG CCCCEEEEEECCCCCHHHHCCCCCCCCCCHHCCCEEEEECCCCCCCCEEEECHHHHHHCC KNPTLLYAYGGFSISMTPRFSPATIAWLDMGGIYAVPALRGGSEYGEEWHKAGMFGKKQN CCCEEEEEECCEEEEECCCCCCCEEEEEECCCEEEECEECCCHHHHHHHHHHCCCCCCCC VFDDYFAAAEYLISENYTNSSKLGAYGRSNGGLLMGAAVTQRPDLFAAILPAVGVLDMLR HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH FQKFTIGWAWTAEYGSADNAEDFPYLLAYSPYHNVKAQTYPATMVMTADHDDRVVPLHSF HHHEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEECCEEEEEECCCCCCEEEEECC KFGAMLQAKQQGQAPVIMRIESKAGHGAGKPTAMQIAEFADIYAFLWQNFGLTLPTEL CCCHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TSRISTLSLLTLGFALGLSGCHTKDATVDAPVAAIAYPASQTVAISEQIHGVEVQDPYR CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEECCHHH WLEESSPETEDWVKRQQAFGEEYLAAIPNKQVVVDRITELWNFEKVGAPFEHGENRFIFR HHHCCCCCHHHHHHHHHHHCHHHHHHCCCCEEHHHHHHHHHCHHHCCCCHHCCCCEEEEE NNGLQSQNVLYVSEKGGDERVLLDPNTLSADGTVALSGVSVSGDGKTLAYGVSKSGSDWQ CCCCCCCCEEEEECCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHH EWAFIDVATGRKLADSLNWIKFSRAEWAHDNSGVYYSRYDAPAGGDILVDVNYNQKVYFH HEEEEEECCCCHHHHCCCCEEECCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCEEEEE RIGDEQAKDTLVYERPDQPEWGFSSTVSDDGNFLLISVSVGTDSRNRFFYKPLKDKSLKV ECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCHHH VELMSELEAEYQFLGNEGPVFYFKTDLDAPRGRIIAVDTRNPAKDNWRTLVPESQDPIAE HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCEECCCCCCCCHHH VSIISEHLVVSYLHDVLGQLSIYNMDGVKREDVPLPGKGKIAGPYGKASKPYFYYIFNSY HHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC VQPQTIYKYDLNKGTNEVFSAPKVSFNPDDYVSEQVFYTSKDGTRIPMLVSYKKGLKKDG CCCCEEEEEECCCCCHHHHCCCCCCCCCCHHCCCEEEEECCCCCCCCEEEECHHHHHHCC KNPTLLYAYGGFSISMTPRFSPATIAWLDMGGIYAVPALRGGSEYGEEWHKAGMFGKKQN CCCEEEEEECCEEEEECCCCCCCEEEEEECCCEEEECEECCCHHHHHHHHHHCCCCCCCC VFDDYFAAAEYLISENYTNSSKLGAYGRSNGGLLMGAAVTQRPDLFAAILPAVGVLDMLR HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH FQKFTIGWAWTAEYGSADNAEDFPYLLAYSPYHNVKAQTYPATMVMTADHDDRVVPLHSF HHHEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEECCEEEEEECCCCCCEEEEECC KFGAMLQAKQQGQAPVIMRIESKAGHGAGKPTAMQIAEFADIYAFLWQNFGLTLPTEL CCCHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1840588; 7764331 [H]