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The map label for this gene is agmR [H]

Identifier: 119775211

GI number: 119775211

Start: 2514520

End: 2515236

Strand: Direct

Name: agmR [H]

Synonym: Sama_2076

Alternate gene names: 119775211

Gene position: 2514520-2515236 (Clockwise)

Preceding gene: 119775210

Following gene: 119775214

Centisome position: 58.39

GC content: 51.32

Gene sequence:

>717_bases
TTGGTTTTATTGCGCATCTGTGACGATAAGAAATATAACCGCATCATGAAGCTCGAGAATCTCAATGTGATCATTGCCGA
CGATCACCCCCTGTTTCGAAACGCCCTCAGGCAAGCCTTGTCCAGCGCCTTTGCCGATACCCGCTGGTTCGAAGCTGACA
GTGCCGATGCACTCCAGCAACTGCTTGATAAACCTGAAGTTGATTACGATCTGGTACTGCTGGATTTGCAAATGCCAGGC
TCCCACGGTTATTCAACCCTCATACATCTTCGTTCCCATTACCCGGATATCCCGGTGGTAGTGATTTCAGCCCATGAAGA
TGCTCAAACCATCAGTCGTGCGATCCATTATGGCAGCGCCGGTTTTATTCCCAAATCAGCCTCCATGGAAACCCTCACCG
AGGCCATGAGTGCGGTACTTTACGGTGATATCTGGCTGCCCCAGGACATTGAGTTGGTCAAGATTGAAGAAGACGGCACC
GACCAGGTGGCGGGTAAGCTTGCGGATCTTACCCCGCAGCAATACCGGGTATTACAGATGTTTGCCGAAGGCCTGCTCAA
CAAACAAATCGCCTATGATTTAGGGGTATCAGAAGCCACCATCAAGGCCCACGCCACCGCCATTTTCAGAAAGCTTGGGG
TAAGAAACCGCACCCAGGCTGTGATTGCACTACAGCAGCTGGAAATGGACAAGGTCGATTTGGGGCAAAGCCACTGA

Upstream 100 bases:

>100_bases
ACAGCAAATACGACTTTAGTCTAACCCCAAAGAAAATTAACACATTCAAGGCAATAGCTCAGGATAAATCCATAGGATAA
TTGGGCATTCTTCTGTTACA

Downstream 100 bases:

>100_bases
GCATTGGCAATGCAGACGCACATTAAAAAGGCCGCATTGGATGCGGCCTTTTTATTTCATCTGTCAGCCCCGGAGGCTCT
CACGCAGCTGATAGTAAAGC

Product: response regulator receiver protein

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MVLLRICDDKKYNRIMKLENLNVIIADDHPLFRNALRQALSSAFADTRWFEADSADALQQLLDKPEVDYDLVLLDLQMPG
SHGYSTLIHLRSHYPDIPVVVISAHEDAQTISRAIHYGSAGFIPKSASMETLTEAMSAVLYGDIWLPQDIELVKIEEDGT
DQVAGKLADLTPQQYRVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALQQLEMDKVDLGQSH

Sequences:

>Translated_238_residues
MVLLRICDDKKYNRIMKLENLNVIIADDHPLFRNALRQALSSAFADTRWFEADSADALQQLLDKPEVDYDLVLLDLQMPG
SHGYSTLIHLRSHYPDIPVVVISAHEDAQTISRAIHYGSAGFIPKSASMETLTEAMSAVLYGDIWLPQDIELVKIEEDGT
DQVAGKLADLTPQQYRVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALQQLEMDKVDLGQSH
>Mature_238_residues
MVLLRICDDKKYNRIMKLENLNVIIADDHPLFRNALRQALSSAFADTRWFEADSADALQQLLDKPEVDYDLVLLDLQMPG
SHGYSTLIHLRSHYPDIPVVVISAHEDAQTISRAIHYGSAGFIPKSASMETLTEAMSAVLYGDIWLPQDIELVKIEEDGT
DQVAGKLADLTPQQYRVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALQQLEMDKVDLGQSH

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=211, Percent_Identity=32.2274881516588, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788546, Length=208, Percent_Identity=28.3653846153846, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1789937, Length=205, Percent_Identity=28.2926829268293, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786747, Length=194, Percent_Identity=25.7731958762887, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788222, Length=198, Percent_Identity=23.7373737373737, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787473, Length=210, Percent_Identity=27.1428571428571, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790102, Length=197, Percent_Identity=25.8883248730964, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788712, Length=196, Percent_Identity=26.0204081632653, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 26616; Mature: 26616

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLLRICDDKKYNRIMKLENLNVIIADDHPLFRNALRQALSSAFADTRWFEADSADALQQ
CEEEEECCCCHHHHHEEECCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LLDKPEVDYDLVLLDLQMPGSHGYSTLIHLRSHYPDIPVVVISAHEDAQTISRAIHYGSA
HHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCC
GFIPKSASMETLTEAMSAVLYGDIWLPQDIELVKIEEDGTDQVAGKLADLTPQQYRVLQM
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHH
FAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALQQLEMDKVDLGQSH
HHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVLLRICDDKKYNRIMKLENLNVIIADDHPLFRNALRQALSSAFADTRWFEADSADALQQ
CEEEEECCCCHHHHHEEECCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LLDKPEVDYDLVLLDLQMPGSHGYSTLIHLRSHYPDIPVVVISAHEDAQTISRAIHYGSA
HHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCC
GFIPKSASMETLTEAMSAVLYGDIWLPQDIELVKIEEDGTDQVAGKLADLTPQQYRVLQM
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHH
FAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALQQLEMDKVDLGQSH
HHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]