| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is ppsA [H]
Identifier: 119775207
GI number: 119775207
Start: 2509179
End: 2511548
Strand: Reverse
Name: ppsA [H]
Synonym: Sama_2072
Alternate gene names: 119775207
Gene position: 2511548-2509179 (Counterclockwise)
Preceding gene: 119775212
Following gene: 119775206
Centisome position: 58.32
GC content: 54.35
Gene sequence:
>2370_bases GTGCAGCAATATGTACTCTGGTATCAGGAATTGGGCATGGGCGACGTCAACAAAGTTGGCGGCAAGAACGCTTCACTGGG CGAGATGATCAGTAATCTGGCCAACGCAGGTGTTCAAGTCCCCGGTGGCTTTGCAACCACGGCTCATGCGTTTAATGAGT TCCTGGAGCAAAGCGGAGTAAACCAGAAGATTTATGACATTCTTGACACTCTGGACGTCGATGATGTTAACGCACTGGCG AAAGTGGGTGCACAGATCAGACAGTGGGTTATCGAAACCCCCTTCCAACCCGAACTCGAACAGGCCATCCACGAGGCCTA TAACAAACTCTCCGGTGAAACCACCGAAGCCTCCTTTGCCGTACGTTCCTCTGCCACCGCCGAAGACATGCCTGATGCCT CTTTCGCCGGTCAGCAGGAAACCTTCCTGAACGTGAAGGGTTACGATGCCGTATTGGTGGCTATCAAGCACGTATTTGCG TCTTTGTTTAACGACCGCGCGATTTCTTACCGTGTGCACCAGGGTTACGATCACCGTGGTGTGGCCCTGTCTGCCGGTGT GCAGCGCATGGTGCGTTCTGACAAAGCCGCCTCTGGTGTGATGTTTACCATAGATACCGAATCCGGTAACGACGATGTGG TATTTGTGACCTCATCTTACGGTCTGGGCGAAATGGTAGTACAGGGCGCGGTTAACCCTGACGAATTTTACGTTCATAAG CCAACCCTGACTGCAGGCCATCAGGCCGTAGTTCGCCGCAACATCGGTTCCAAGCTTATCCAGATGGTCTACTCAGACGA TCTTTCACACGGTAAGCAGGTGAAAATCGAAGATGTGTCGGTGGAAAACCGTCGTCAGTTCTCCATTAATGATGCCGAAG TGATGGAACTGGCCAAGCAGGCCATCATCATTGAGAAGCACTATGGTCGTCCAATGGACATCGAGTGGGCCAAAGATGGC AACGACGGTAAACTCTATATAGTTCAGGCCCGCCCTGAAACCGTACGCTCACGTGAAGACGTTCAGCTGATTGAACGCTA TCACTTAAAGAGCCGTGGCGTTGTGATAAGCGAAGGCCGTGCCATCGGTCACAAGGTTGGCTCAGGTGTTGCCAAAGTGC TGAAGTCCATTGAAGAAATGGACAAAATCCAGCCAGGTGACGTACTGGTAACCGACATGACCGACCCGGATTGGGAACCT ATCATGAAGCGCGCCAGCGCCATCGTGACCAACCGTGGTGGCCGTACCTGCCATGCTGCGATTATCGCCCGTGAACTGGG TGTGCCAGCTGTAGTGGGTTGTGGTGATGTGACTGACCGCATCCAGAACGGCCAGATGGTGACTGTATCCTGCGCCGAAG GCGACACAGGTTATATCTACGATGGCAAGCAGGAGTTTGAAGTGATCTCCAGCCGCGTGGATTCCATGCCCTCATTACCA ATGAAGATAATGATGAATGTGGGTAACCCTGACCGCGCCTTCGACTTCGCCCGTCTGCCAAACGAGGGTGTGGGTCTGGC CCGTCTTGAGTTCATCATCAACCGCATGATTGGTATTCACCCCAAGGCACTTCTCGAATTCAACCAGCAGGAAGCTGCCC TGCAGGAAGAAATCAACGAAATGATTGCCGGTTACGACTCGCCAGTAGAGTACTACGTAGCCCGTCTGGTTGAAGGTATC GCCACTATCGCGGCGGCCTTCCATCCGAAGAAGGTGATCGTGCGTATGTCTGACTTTAAGTCAAACGAGTACGCCAACCT GGTGGGCGGTGATCGCTACGAGCCAGAGGAAGAAAACCCAATGTTGGGCTTCCGTGGTGCCAGCCGTTATATCTCTGAGT CCTTCCGCGACTGTTTCGCCCTCGAGTGTGAAGCTATCAAGCGCGTTCGCAACGACATGGGTCTGAAGAACGTGGAAATC ATGATCCCCTTCGTGCGCACCCTGGGTGAGGCCGAGCAGGTGATTGAACTCCTCAAACAGGAAGGTCTGGAGCGTGGTAA AGACGGTCTGCGCGTTATCATGATGTGTGAACTGCCATCCAACGCCCTGCTGGCCGAGCAGTTCCTGGAGCACTTCGATG GCTTCTCCATCGGCTCTAACGACCTGACTCAGCTGACCCTGGGCCTGGACCGTGACTCCGGCATCATCAGCCACCTGTTC GACGAGCGTAACGAAGCCGTGAAGGCACTGCTGGCCATGGCCATCAAGGCTGCCAAGGCCAAGGGCGCTTACGTGGGTAT CTGTGGTCAGGGTCCATCGGATCACGCCGACTTCGCCGCCTGGCTGGTGGAGCAGGGCATTGATACCGTGTCGCTGAACC CTGACACTGTGATTGATACCTGGCTGTATCTGGCCGAGGCCCACGGTTAA
Upstream 100 bases:
>100_bases TACAAAGAAAATTATAGATTTACGCTTAATGCCCCGAAGTGTAAAATGCCGCTGCCCCGGTGTGAAGGGGCCAACTAAAT AAACATGCGGAGATAGAACT
Downstream 100 bases:
>100_bases TCAGGGCAGAACCCTCGGTTAATCCGGACAATACCCTCGGTTAATCCGGACATAGATAGCCACATTCTGAGAAGGTCGGC GCCGCTGGCGCCCCTTTTTA
Product: phosphoenolpyruvate synthase
Products: NA
Alternate protein names: PEP synthase; Pyruvate, water dikinase [H]
Number of amino acids: Translated: 789; Mature: 789
Protein sequence:
>789_residues MQQYVLWYQELGMGDVNKVGGKNASLGEMISNLANAGVQVPGGFATTAHAFNEFLEQSGVNQKIYDILDTLDVDDVNALA KVGAQIRQWVIETPFQPELEQAIHEAYNKLSGETTEASFAVRSSATAEDMPDASFAGQQETFLNVKGYDAVLVAIKHVFA SLFNDRAISYRVHQGYDHRGVALSAGVQRMVRSDKAASGVMFTIDTESGNDDVVFVTSSYGLGEMVVQGAVNPDEFYVHK PTLTAGHQAVVRRNIGSKLIQMVYSDDLSHGKQVKIEDVSVENRRQFSINDAEVMELAKQAIIIEKHYGRPMDIEWAKDG NDGKLYIVQARPETVRSREDVQLIERYHLKSRGVVISEGRAIGHKVGSGVAKVLKSIEEMDKIQPGDVLVTDMTDPDWEP IMKRASAIVTNRGGRTCHAAIIARELGVPAVVGCGDVTDRIQNGQMVTVSCAEGDTGYIYDGKQEFEVISSRVDSMPSLP MKIMMNVGNPDRAFDFARLPNEGVGLARLEFIINRMIGIHPKALLEFNQQEAALQEEINEMIAGYDSPVEYYVARLVEGI ATIAAAFHPKKVIVRMSDFKSNEYANLVGGDRYEPEEENPMLGFRGASRYISESFRDCFALECEAIKRVRNDMGLKNVEI MIPFVRTLGEAEQVIELLKQEGLERGKDGLRVIMMCELPSNALLAEQFLEHFDGFSIGSNDLTQLTLGLDRDSGIISHLF DERNEAVKALLAMAIKAAKAKGAYVGICGQGPSDHADFAAWLVEQGIDTVSLNPDTVIDTWLYLAEAHG
Sequences:
>Translated_789_residues MQQYVLWYQELGMGDVNKVGGKNASLGEMISNLANAGVQVPGGFATTAHAFNEFLEQSGVNQKIYDILDTLDVDDVNALA KVGAQIRQWVIETPFQPELEQAIHEAYNKLSGETTEASFAVRSSATAEDMPDASFAGQQETFLNVKGYDAVLVAIKHVFA SLFNDRAISYRVHQGYDHRGVALSAGVQRMVRSDKAASGVMFTIDTESGNDDVVFVTSSYGLGEMVVQGAVNPDEFYVHK PTLTAGHQAVVRRNIGSKLIQMVYSDDLSHGKQVKIEDVSVENRRQFSINDAEVMELAKQAIIIEKHYGRPMDIEWAKDG NDGKLYIVQARPETVRSREDVQLIERYHLKSRGVVISEGRAIGHKVGSGVAKVLKSIEEMDKIQPGDVLVTDMTDPDWEP IMKRASAIVTNRGGRTCHAAIIARELGVPAVVGCGDVTDRIQNGQMVTVSCAEGDTGYIYDGKQEFEVISSRVDSMPSLP MKIMMNVGNPDRAFDFARLPNEGVGLARLEFIINRMIGIHPKALLEFNQQEAALQEEINEMIAGYDSPVEYYVARLVEGI ATIAAAFHPKKVIVRMSDFKSNEYANLVGGDRYEPEEENPMLGFRGASRYISESFRDCFALECEAIKRVRNDMGLKNVEI MIPFVRTLGEAEQVIELLKQEGLERGKDGLRVIMMCELPSNALLAEQFLEHFDGFSIGSNDLTQLTLGLDRDSGIISHLF DERNEAVKALLAMAIKAAKAKGAYVGICGQGPSDHADFAAWLVEQGIDTVSLNPDTVIDTWLYLAEAHG >Mature_789_residues MQQYVLWYQELGMGDVNKVGGKNASLGEMISNLANAGVQVPGGFATTAHAFNEFLEQSGVNQKIYDILDTLDVDDVNALA KVGAQIRQWVIETPFQPELEQAIHEAYNKLSGETTEASFAVRSSATAEDMPDASFAGQQETFLNVKGYDAVLVAIKHVFA SLFNDRAISYRVHQGYDHRGVALSAGVQRMVRSDKAASGVMFTIDTESGNDDVVFVTSSYGLGEMVVQGAVNPDEFYVHK PTLTAGHQAVVRRNIGSKLIQMVYSDDLSHGKQVKIEDVSVENRRQFSINDAEVMELAKQAIIIEKHYGRPMDIEWAKDG NDGKLYIVQARPETVRSREDVQLIERYHLKSRGVVISEGRAIGHKVGSGVAKVLKSIEEMDKIQPGDVLVTDMTDPDWEP IMKRASAIVTNRGGRTCHAAIIARELGVPAVVGCGDVTDRIQNGQMVTVSCAEGDTGYIYDGKQEFEVISSRVDSMPSLP MKIMMNVGNPDRAFDFARLPNEGVGLARLEFIINRMIGIHPKALLEFNQQEAALQEEINEMIAGYDSPVEYYVARLVEGI ATIAAAFHPKKVIVRMSDFKSNEYANLVGGDRYEPEEENPMLGFRGASRYISESFRDCFALECEAIKRVRNDMGLKNVEI MIPFVRTLGEAEQVIELLKQEGLERGKDGLRVIMMCELPSNALLAEQFLEHFDGFSIGSNDLTQLTLGLDRDSGIISHLF DERNEAVKALLAMAIKAAKAKGAYVGICGQGPSDHADFAAWLVEQGIDTVSLNPDTVIDTWLYLAEAHG
Specific function: Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1787994, Length=782, Percent_Identity=76.5984654731458, Blast_Score=1280, Evalue=0.0, Organism=Escherichia coli, GI1788756, Length=456, Percent_Identity=27.6315789473684, Blast_Score=131, Evalue=2e-31, Organism=Escherichia coli, GI1788726, Length=191, Percent_Identity=32.9842931937173, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1789193, Length=405, Percent_Identity=25.1851851851852, Blast_Score=90, Evalue=4e-19, Organism=Escherichia coli, GI48994992, Length=195, Percent_Identity=31.7948717948718, Blast_Score=87, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17564524, Length=315, Percent_Identity=26.6666666666667, Blast_Score=89, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR006319 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.2 [H]
Molecular weight: Translated: 86894; Mature: 86894
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQYVLWYQELGMGDVNKVGGKNASLGEMISNLANAGVQVPGGFATTAHAFNEFLEQSGV CCCCEEEHHHCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC NQKIYDILDTLDVDDVNALAKVGAQIRQWVIETPFQPELEQAIHEAYNKLSGETTEASFA CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHEE VRSSATAEDMPDASFAGQQETFLNVKGYDAVLVAIKHVFASLFNDRAISYRVHQGYDHRG ECCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC VALSAGVQRMVRSDKAASGVMFTIDTESGNDDVVFVTSSYGLGEMVVQGAVNPDEFYVHK EEHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEECCCCCHHHHHHCCCCCCCEEEEC PTLTAGHQAVVRRNIGSKLIQMVYSDDLSHGKQVKIEDVSVENRRQFSINDAEVMELAKQ CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEECCCHHHHHHHHHH AIIIEKHYGRPMDIEWAKDGNDGKLYIVQARPETVRSREDVQLIERYHLKSRGVVISEGR HHEEECCCCCCCCEEECCCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHCCEEEECCC AIGHKVGSGVAKVLKSIEEMDKIQPGDVLVTDMTDPDWEPIMKRASAIVTNRGGRTCHAA HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHH IIARELGVPAVVGCGDVTDRIQNGQMVTVSCAEGDTGYIYDGKQEFEVISSRVDSMPSLP HHHHHCCCCEEEECCHHHHHHCCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHCCCCCC MKIMMNVGNPDRAFDFARLPNEGVGLARLEFIINRMIGIHPKALLEFNQQEAALQEEINE HHEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHH MIAGYDSPVEYYVARLVEGIATIAAAFHPKKVIVRMSDFKSNEYANLVGGDRYEPEEENP HHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCCCHHCCCCCCCCCCCCCC MLGFRGASRYISESFRDCFALECEAIKRVRNDMGLKNVEIMIPFVRTLGEAEQVIELLKQ CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCHHHHHHHHHH EGLERGKDGLRVIMMCELPSNALLAEQFLEHFDGFSIGSNDLTQLTLGLDRDSGIISHLF HHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHH DERNEAVKALLAMAIKAAKAKGAYVGICGQGPSDHADFAAWLVEQGIDTVSLNPDTVIDT HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCHHHHH WLYLAEAHG HHHHHHCCC >Mature Secondary Structure MQQYVLWYQELGMGDVNKVGGKNASLGEMISNLANAGVQVPGGFATTAHAFNEFLEQSGV CCCCEEEHHHCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC NQKIYDILDTLDVDDVNALAKVGAQIRQWVIETPFQPELEQAIHEAYNKLSGETTEASFA CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHEE VRSSATAEDMPDASFAGQQETFLNVKGYDAVLVAIKHVFASLFNDRAISYRVHQGYDHRG ECCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC VALSAGVQRMVRSDKAASGVMFTIDTESGNDDVVFVTSSYGLGEMVVQGAVNPDEFYVHK EEHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEECCCCCHHHHHHCCCCCCCEEEEC PTLTAGHQAVVRRNIGSKLIQMVYSDDLSHGKQVKIEDVSVENRRQFSINDAEVMELAKQ CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEECCCHHHHHHHHHH AIIIEKHYGRPMDIEWAKDGNDGKLYIVQARPETVRSREDVQLIERYHLKSRGVVISEGR HHEEECCCCCCCCEEECCCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHCCEEEECCC AIGHKVGSGVAKVLKSIEEMDKIQPGDVLVTDMTDPDWEPIMKRASAIVTNRGGRTCHAA HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHH IIARELGVPAVVGCGDVTDRIQNGQMVTVSCAEGDTGYIYDGKQEFEVISSRVDSMPSLP HHHHHCCCCEEEECCHHHHHHCCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHCCCCCC MKIMMNVGNPDRAFDFARLPNEGVGLARLEFIINRMIGIHPKALLEFNQQEAALQEEINE HHEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHH MIAGYDSPVEYYVARLVEGIATIAAAFHPKKVIVRMSDFKSNEYANLVGGDRYEPEEENP HHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCCCHHCCCCCCCCCCCCCC MLGFRGASRYISESFRDCFALECEAIKRVRNDMGLKNVEIMIPFVRTLGEAEQVIELLKQ CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCHHHHHHHHHH EGLERGKDGLRVIMMCELPSNALLAEQFLEHFDGFSIGSNDLTQLTLGLDRDSGIISHLF HHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHH DERNEAVKALLAMAIKAAKAKGAYVGICGQGPSDHADFAAWLVEQGIDTVSLNPDTVIDT HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCHHHHH WLYLAEAHG HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1310524; 9097039; 9278503 [H]