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The map label for this gene is sigK [H]

Identifier: 119775171

GI number: 119775171

Start: 2473361

End: 2474008

Strand: Direct

Name: sigK [H]

Synonym: Sama_2036

Alternate gene names: 119775171

Gene position: 2473361-2474008 (Clockwise)

Preceding gene: 119775170

Following gene: 119775172

Centisome position: 57.44

GC content: 50.0

Gene sequence:

>648_bases
ATGCAAATTTTCAGGCAAAATCAGCACGGATCCCACTATGATAGAAGCTCGTCTCCTATCAATATCAAAGGTATGCAGGA
TTCAAAGCCAGATATCAGTGAAGAAACATTGCGCCACTGGTTGGTGGCGGTAGCCAATAACAGGGACAAATCGGCCTTCC
GCGCCCTGTTTGATCATTTTGGCCCCAAGGTCAGATCCTTTGGGCTGTCGCGTCTTTCGCAACAAGGTCTCGCAATGGAC
TTGGTGCAGGAAACCCTCACCACGGTATGGACCAAAGCGCATCTTTTCGATACCGATCGGGGAAATGTCAGTACCTGGGT
GTACGCCATCATGCGAAATCAGTGTTTTGACATGCTCAGACGGGTCCAACACAACCGGGAAGATGCCTTTGGTGACGACA
TTTGGCCTTTATTCGATGTCGATACCCATGCGGGCGACCATGGCGACCATAAGTTGGACGCATTGCTTAACCAATATCTT
TCAAAGCTACCCAAGCTCCAACGTGAGGTGGTTCAAGGCATATATCTTCAGGAACTCAGCCAACAGGAACTGGCCGACCG
ACTCGGCGTTCCCTTGGGTACCATCAAGTCCAGATTGCGCCTGGGCCTTGAGAAACTGAAAAGCCTGCTGGAGAAACATC
ATGATTAA

Upstream 100 bases:

>100_bases
CAAATTATTGAAAAAGAGTGATCCGACCGTGTCCCGGCTACGTAACTTGTTTTACGCAGCCAACCTTGCTTTATGAAAAC
GCCAACAAACGAGCAAAAAC

Downstream 100 bases:

>100_bases
ACATCACCCCAGCGACGAGATGTTGCTTACCCATGCTGCCGGCGAAACTGTGCTTGGTCTGGCGATTGCGCTCAGCGCAC
ACTGTGAACTTTGCCCCACC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MQIFRQNQHGSHYDRSSSPINIKGMQDSKPDISEETLRHWLVAVANNRDKSAFRALFDHFGPKVRSFGLSRLSQQGLAMD
LVQETLTTVWTKAHLFDTDRGNVSTWVYAIMRNQCFDMLRRVQHNREDAFGDDIWPLFDVDTHAGDHGDHKLDALLNQYL
SKLPKLQREVVQGIYLQELSQQELADRLGVPLGTIKSRLRLGLEKLKSLLEKHHD

Sequences:

>Translated_215_residues
MQIFRQNQHGSHYDRSSSPINIKGMQDSKPDISEETLRHWLVAVANNRDKSAFRALFDHFGPKVRSFGLSRLSQQGLAMD
LVQETLTTVWTKAHLFDTDRGNVSTWVYAIMRNQCFDMLRRVQHNREDAFGDDIWPLFDVDTHAGDHGDHKLDALLNQYL
SKLPKLQREVVQGIYLQELSQQELADRLGVPLGTIKSRLRLGLEKLKSLLEKHHD
>Mature_215_residues
MQIFRQNQHGSHYDRSSSPINIKGMQDSKPDISEETLRHWLVAVANNRDKSAFRALFDHFGPKVRSFGLSRLSQQGLAMD
LVQETLTTVWTKAHLFDTDRGNVSTWVYAIMRNQCFDMLRRVQHNREDAFGDDIWPLFDVDTHAGDHGDHKLDALLNQYL
SKLPKLQREVVQGIYLQELSQQELADRLGVPLGTIKSRLRLGLEKLKSLLEKHHD

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 24814; Mature: 24814

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIFRQNQHGSHYDRSSSPINIKGMQDSKPDISEETLRHWLVAVANNRDKSAFRALFDHF
CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GPKVRSFGLSRLSQQGLAMDLVQETLTTVWTKAHLFDTDRGNVSTWVYAIMRNQCFDMLR
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
RVQHNREDAFGDDIWPLFDVDTHAGDHGDHKLDALLNQYLSKLPKLQREVVQGIYLQELS
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQELADRLGVPLGTIKSRLRLGLEKLKSLLEKHHD
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQIFRQNQHGSHYDRSSSPINIKGMQDSKPDISEETLRHWLVAVANNRDKSAFRALFDHF
CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GPKVRSFGLSRLSQQGLAMDLVQETLTTVWTKAHLFDTDRGNVSTWVYAIMRNQCFDMLR
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
RVQHNREDAFGDDIWPLFDVDTHAGDHGDHKLDALLNQYLSKLPKLQREVVQGIYLQELS
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQELADRLGVPLGTIKSRLRLGLEKLKSLLEKHHD
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]