| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775170
Identifier: 119775170
GI number: 119775170
Start: 2472727
End: 2473281
Strand: Direct
Name: 119775170
Synonym: Sama_2035
Alternate gene names: NA
Gene position: 2472727-2473281 (Clockwise)
Preceding gene: 119775168
Following gene: 119775171
Centisome position: 57.42
GC content: 48.83
Gene sequence:
>555_bases ATGCAACTGGCCCTTTTTCCTTTACCCATTTGTCTGCTGCCCGGTGGTTTCACCAAACTGAGGATTTTTGAGCCCAGGTA CAAGCGCCTGGTGAGCGAATCGCTTAGCTCGGGTATGGGATTTGGTCTGTGTATGTTAGGGGAAAATAACGAGCCTATGC CCGTTGCTACGCGGGTTGAAATTATTGACTTCGAAGCCCTCGATGACGGCTTACTTGGAATAAGCATCGCCGGGATAGAG CGTATCGAAATTCTTTCATGGCACAGTGAATCAGATGGATTAAAGCGGGGTGAGGCACGCATTCTCTCTCCGTGGGAGCC TAGCAAAGTAAACAAAGATCATCTGCTGCTTTCTCAAAGGCTTGAGGAGGTGATGCATGCTTTCCCTCAGCAGCAAAACC TGAATCAAACCGCTGATTTTAACGACCTCACCTGGGTATGCCAACGTTGGTTGGAACTACTGCCCATAGCGCTGGTACAT AAGCAGCAGTGTTATCGACAGGACTCACCGGATATGGCGCTTGCTCTGCTGGAACAAATTATTGAAAAAGAGTGA
Upstream 100 bases:
>100_bases CGCCGGTGACACTGCAAACCGGGTTTGTCGCTACGCTCAAGTGATCCCCTTGTCGCTCTATTACGTAATGTCAGCCAGAA AAGTTTACTCTGGAGCCCTT
Downstream 100 bases:
>100_bases TCCGACCGTGTCCCGGCTACGTAACTTGTTTTACGCAGCCAACCTTGCTTTATGAAAACGCCAACAAACGAGCAAAAACA TGCAAATTTTCAGGCAAAAT
Product: ATP-dependent protease La
Products: NA
Alternate protein names: ATP-Dependent Protease La; ATP-Dependent Protease La Domain-Containing Protein; ATP-Dependent Protease La Domain Protein; ATP-Dependent Endopeptidase Lon; Peptidase S
Number of amino acids: Translated: 184; Mature: 184
Protein sequence:
>184_residues MQLALFPLPICLLPGGFTKLRIFEPRYKRLVSESLSSGMGFGLCMLGENNEPMPVATRVEIIDFEALDDGLLGISIAGIE RIEILSWHSESDGLKRGEARILSPWEPSKVNKDHLLLSQRLEEVMHAFPQQQNLNQTADFNDLTWVCQRWLELLPIALVH KQQCYRQDSPDMALALLEQIIEKE
Sequences:
>Translated_184_residues MQLALFPLPICLLPGGFTKLRIFEPRYKRLVSESLSSGMGFGLCMLGENNEPMPVATRVEIIDFEALDDGLLGISIAGIE RIEILSWHSESDGLKRGEARILSPWEPSKVNKDHLLLSQRLEEVMHAFPQQQNLNQTADFNDLTWVCQRWLELLPIALVH KQQCYRQDSPDMALALLEQIIEKE >Mature_184_residues MQLALFPLPICLLPGGFTKLRIFEPRYKRLVSESLSSGMGFGLCMLGENNEPMPVATRVEIIDFEALDDGLLGISIAGIE RIEILSWHSESDGLKRGEARILSPWEPSKVNKDHLLLSQRLEEVMHAFPQQQNLNQTADFNDLTWVCQRWLELLPIALVH KQQCYRQDSPDMALALLEQIIEKE
Specific function: Unknown
COG id: COG2802
COG function: function code R; Uncharacterized protein, similar to the N-terminal domain of Lon protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20955; Mature: 20955
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLALFPLPICLLPGGFTKLRIFEPRYKRLVSESLSSGMGFGLCMLGENNEPMPVATRVE CCEECCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEHEEE IIDFEALDDGLLGISIAGIERIEILSWHSESDGLKRGEARILSPWEPSKVNKDHLLLSQR EEEECCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHH LEEVMHAFPQQQNLNQTADFNDLTWVCQRWLELLPIALVHKQQCYRQDSPDMALALLEQI HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH IEKE HHCC >Mature Secondary Structure MQLALFPLPICLLPGGFTKLRIFEPRYKRLVSESLSSGMGFGLCMLGENNEPMPVATRVE CCEECCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEHEEE IIDFEALDDGLLGISIAGIERIEILSWHSESDGLKRGEARILSPWEPSKVNKDHLLLSQR EEEECCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHH LEEVMHAFPQQQNLNQTADFNDLTWVCQRWLELLPIALVHKQQCYRQDSPDMALALLEQI HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH IEKE HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA