| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775160
Identifier: 119775160
GI number: 119775160
Start: 2460445
End: 2462355
Strand: Reverse
Name: 119775160
Synonym: Sama_2025
Alternate gene names: NA
Gene position: 2462355-2460445 (Counterclockwise)
Preceding gene: 119775161
Following gene: 119775158
Centisome position: 57.18
GC content: 45.58
Gene sequence:
>1911_bases ATGAAGAAGTTTCTGTTAAGCCTTACCGCAGTTACCTGCATGGCATCACAGCCACTCTATGCGGAGCCAGTGACTGCGCA GTCACAAGCCGTGAGCACTATTGAAGCCTTTTCTACTGCGCCTCTTATTCGCAGTGTTGCTGTTTCAAGCGACGGAACCA AAGTAGCCATCATCCGGGCCACGTCGAAGGAAGGTGACTATGTGATTGAAATCCGCGACACGAGCAAACTCGATGCCCAA CCAATCGTTTTGGGAGCAAATCGTATGATGGTTTCGGGTGTCGTGTGGCTTAACAATGACAAGATTGGCGTAATGTTCCG TCAGATCTTGAAAGATGGTGCCAGAAGGTATTGGGTAAACCGATTTGCAATTACCGATGCAGATGGGAAAGGAGATTGGT TAATTCCGTTTCAAAACAATCCCCGCGCAGGTTTTTCTATCCTGAATACCTTGCCTGATAACAAGGATGAAATCCTGGTT GAAACCGACCTGAACAACAACTACAAGCCTGATGTTGTCCGTTTTAACGTAAATAATGGTCGCACAGTCTCAGTTCTTCG AGGCAGTGACAAAATTTCTGGTGGTTATATCTCAGATGCAGATGGTGATGTACGCGCTGCGACAGGCTGGAATTTGTCAG ACAATGCCATCGACCTTTATGCCAGAGCGAAGGGCGATAGTGACTGGAAGCTCGTGAAACAGATTTCACCCAAATCCAGA GAAAGTTACAGCTTTATCGGCTTTTCAAAGGAAAATCCCGATGAAATTTATGTCAACGCCAACCAAGGGCAGGACAAAAC CGGAATCTACCTTTACAACATTAAAACGGGCCAGTATTCCGAACGTCTATTCGGTTTGGAAAACGTCGATGCGGATGGCG TGATCCAGAAAAAAGACGGTAGCTTGGTTGGATTTGGTTATTCAGCAAAATGGCCTCAGCGCTATCTTACCGATGCCAAT GAACAAGCAATTTATGATGGATTGGATAAACTGTTTGAAGGCAAGTTTGTTTCCATTATTAGCCGTTCTAATGATGACTC AGTCATGGTGGTCAGTGCGTCATCCGACAAGGATCCTGGGACTTATTACCTTGTTTTAAACAAAAGTAAAATTGAAACCA TCGGCAGTAAGTTGCCCTTTGTCGACCAAGAAAAACTTGGTAGCGTCAAATACATCTCTTACAAAGCCCGTGATGGCCGT AAAGTCTACGCATATGTCACTCTTCCAAAAGGAAAAGGACCGTTTCCTGCGGTAGTATTGCCACATGGTGGCCCTTGGGT TCGAGACACAATCGTATTTGACGATTGGGCGCAATTACTGGCTTCCAATGGTTATGTTGTTATCCAGCCCAACTACCGAG GTTCAACCGGTTATGGTATCGAGCACTGGACTGCGGGTGACAACAATTGGGGCCTGAAAATGCAGGACGACCTTGATGAT GCTGCCATGTATCTGGTTGAAAAAGGACTGGCCACCAAGGACAAGTTGGCCATGTTTGGTTGGAGTTATGGTGGTTACGC CGCTTTCGCCGCGTCAATGCGCGATAATAACATTTACCAGTGTACTGTTGCCGGAGCGGGTGTCAGCGATTTAAGTAAAA TCAATGCAACCTTGAACGAAAATCGGTTCTTAAGCCGTCTGCAACGTCCAACAATCACGGGTGTTTCACCTCTTTCACAG GTTGAGAAAGTCAATGTGCCAATACTCGTGGTACACGGTGATATCGATGGACGTGTGCCAGTTGCCCACAGCCGTGAGTT TGTAGAAAAACTCAAGGATTTGAAAAAGGATCATAAATACGTTGAGCTGGTGGACGCTGATCACTTTTCAGACACTTTGT TTTATGAACATAAAATGGCGTTTTACTCAGAACTTATTGATTGGTTAGACAATAAGTGCGGTCTGAAGTAA
Upstream 100 bases:
>100_bases GATGTTCAACAAATGCTGAACATGATTATGAGTAAACGATGAAAAATGGCCCTGCGGGGCCATTTTTTTCGAAAGGAATT ACAGAATTAAGGACGGTTAA
Downstream 100 bases:
>100_bases CACAATAACTCTGATAAAAGCCCGGCAATTGCCGGGCTTTTTGATGCAAGAGCATTACACATAGTGTTCAGACACAATCA CACTTTTTGATCATGGTGAT
Product: prolyl oligopeptidase family protein
Products: NA
Alternate protein names: AARE; Acyl-peptide hydrolase; APH; Acylaminoacyl-peptidase [H]
Number of amino acids: Translated: 636; Mature: 636
Protein sequence:
>636_residues MKKFLLSLTAVTCMASQPLYAEPVTAQSQAVSTIEAFSTAPLIRSVAVSSDGTKVAIIRATSKEGDYVIEIRDTSKLDAQ PIVLGANRMMVSGVVWLNNDKIGVMFRQILKDGARRYWVNRFAITDADGKGDWLIPFQNNPRAGFSILNTLPDNKDEILV ETDLNNNYKPDVVRFNVNNGRTVSVLRGSDKISGGYISDADGDVRAATGWNLSDNAIDLYARAKGDSDWKLVKQISPKSR ESYSFIGFSKENPDEIYVNANQGQDKTGIYLYNIKTGQYSERLFGLENVDADGVIQKKDGSLVGFGYSAKWPQRYLTDAN EQAIYDGLDKLFEGKFVSIISRSNDDSVMVVSASSDKDPGTYYLVLNKSKIETIGSKLPFVDQEKLGSVKYISYKARDGR KVYAYVTLPKGKGPFPAVVLPHGGPWVRDTIVFDDWAQLLASNGYVVIQPNYRGSTGYGIEHWTAGDNNWGLKMQDDLDD AAMYLVEKGLATKDKLAMFGWSYGGYAAFAASMRDNNIYQCTVAGAGVSDLSKINATLNENRFLSRLQRPTITGVSPLSQ VEKVNVPILVVHGDIDGRVPVAHSREFVEKLKDLKKDHKYVELVDADHFSDTLFYEHKMAFYSELIDWLDNKCGLK
Sequences:
>Translated_636_residues MKKFLLSLTAVTCMASQPLYAEPVTAQSQAVSTIEAFSTAPLIRSVAVSSDGTKVAIIRATSKEGDYVIEIRDTSKLDAQ PIVLGANRMMVSGVVWLNNDKIGVMFRQILKDGARRYWVNRFAITDADGKGDWLIPFQNNPRAGFSILNTLPDNKDEILV ETDLNNNYKPDVVRFNVNNGRTVSVLRGSDKISGGYISDADGDVRAATGWNLSDNAIDLYARAKGDSDWKLVKQISPKSR ESYSFIGFSKENPDEIYVNANQGQDKTGIYLYNIKTGQYSERLFGLENVDADGVIQKKDGSLVGFGYSAKWPQRYLTDAN EQAIYDGLDKLFEGKFVSIISRSNDDSVMVVSASSDKDPGTYYLVLNKSKIETIGSKLPFVDQEKLGSVKYISYKARDGR KVYAYVTLPKGKGPFPAVVLPHGGPWVRDTIVFDDWAQLLASNGYVVIQPNYRGSTGYGIEHWTAGDNNWGLKMQDDLDD AAMYLVEKGLATKDKLAMFGWSYGGYAAFAASMRDNNIYQCTVAGAGVSDLSKINATLNENRFLSRLQRPTITGVSPLSQ VEKVNVPILVVHGDIDGRVPVAHSREFVEKLKDLKKDHKYVELVDADHFSDTLFYEHKMAFYSELIDWLDNKCGLK >Mature_636_residues MKKFLLSLTAVTCMASQPLYAEPVTAQSQAVSTIEAFSTAPLIRSVAVSSDGTKVAIIRATSKEGDYVIEIRDTSKLDAQ PIVLGANRMMVSGVVWLNNDKIGVMFRQILKDGARRYWVNRFAITDADGKGDWLIPFQNNPRAGFSILNTLPDNKDEILV ETDLNNNYKPDVVRFNVNNGRTVSVLRGSDKISGGYISDADGDVRAATGWNLSDNAIDLYARAKGDSDWKLVKQISPKSR ESYSFIGFSKENPDEIYVNANQGQDKTGIYLYNIKTGQYSERLFGLENVDADGVIQKKDGSLVGFGYSAKWPQRYLTDAN EQAIYDGLDKLFEGKFVSIISRSNDDSVMVVSASSDKDPGTYYLVLNKSKIETIGSKLPFVDQEKLGSVKYISYKARDGR KVYAYVTLPKGKGPFPAVVLPHGGPWVRDTIVFDDWAQLLASNGYVVIQPNYRGSTGYGIEHWTAGDNNWGLKMQDDLDD AAMYLVEKGLATKDKLAMFGWSYGGYAAFAASMRDNNIYQCTVAGAGVSDLSKINATLNENRFLSRLQRPTITGVSPLSQ VEKVNVPILVVHGDIDGRVPVAHSREFVEKLKDLKKDHKYVELVDADHFSDTLFYEHKMAFYSELIDWLDNKCGLK
Specific function: This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N- acetylated amino acid and a peptide with a free N-terminus [H]
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9C family [H]
Homologues:
Organism=Caenorhabditis elegans, GI25144537, Length=430, Percent_Identity=28.8372093023256, Blast_Score=125, Evalue=1e-28, Organism=Caenorhabditis elegans, GI25144540, Length=410, Percent_Identity=29.7560975609756, Blast_Score=124, Evalue=2e-28, Organism=Caenorhabditis elegans, GI25144543, Length=339, Percent_Identity=29.7935103244838, Blast_Score=111, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17552908, Length=194, Percent_Identity=31.9587628865979, Blast_Score=89, Evalue=9e-18, Organism=Caenorhabditis elegans, GI25149159, Length=257, Percent_Identity=26.4591439688716, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17508017, Length=225, Percent_Identity=28.8888888888889, Blast_Score=72, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17508019, Length=225, Percent_Identity=28.8888888888889, Blast_Score=72, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR001375 - InterPro: IPR004106 [H]
Pfam domain/function: PF00326 Peptidase_S9 [H]
EC number: =3.4.19.1 [H]
Molecular weight: Translated: 70592; Mature: 70592
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFLLSLTAVTCMASQPLYAEPVTAQSQAVSTIEAFSTAPLIRSVAVSSDGTKVAIIRA CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEE TSKEGDYVIEIRDTSKLDAQPIVLGANRMMVSGVVWLNNDKIGVMFRQILKDGARRYWVN ECCCCCEEEEEECCCCCCCCEEEEECCEEEEEEEEEECCCCHHHHHHHHHHHCHHEEEEE RFAITDADGKGDWLIPFQNNPRAGFSILNTLPDNKDEILVETDLNNNYKPDVVRFNVNNG EEEEECCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEECCCC RTVSVLRGSDKISGGYISDADGDVRAATGWNLSDNAIDLYARAKGDSDWKLVKQISPKSR CEEEEEECCCCCCCCEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHHHHCCCCCC ESYSFIGFSKENPDEIYVNANQGQDKTGIYLYNIKTGQYSERLFGLENVDADGVIQKKDG CCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCHHHHHCCCCCCCCCCEEEECCC SLVGFGYSAKWPQRYLTDANEQAIYDGLDKLFEGKFVSIISRSNDDSVMVVSASSDKDPG CEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCCCC TYYLVLNKSKIETIGSKLPFVDQEKLGSVKYISYKARDGRKVYAYVTLPKGKGPFPAVVL EEEEEEECCHHHHHHCCCCCCCHHHCCCEEEEEEECCCCCEEEEEEEECCCCCCCCEEEE PHGGPWVRDTIVFDDWAQLLASNGYVVIQPNYRGSTGYGIEHWTAGDNNWGLKMQDDLDD CCCCCCEEEEEEHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCCCCCEEECCCCHH AAMYLVEKGLATKDKLAMFGWSYGGYAAFAASMRDNNIYQCTVAGAGVSDLSKINATLNE HHHHHHHCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCH NRFLSRLQRPTITGVSPLSQVEKVNVPILVVHGDIDGRVPVAHSREFVEKLKDLKKDHKY HHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCE VELVDADHFSDTLFYEHKMAFYSELIDWLDNKCGLK EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKKFLLSLTAVTCMASQPLYAEPVTAQSQAVSTIEAFSTAPLIRSVAVSSDGTKVAIIRA CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEE TSKEGDYVIEIRDTSKLDAQPIVLGANRMMVSGVVWLNNDKIGVMFRQILKDGARRYWVN ECCCCCEEEEEECCCCCCCCEEEEECCEEEEEEEEEECCCCHHHHHHHHHHHCHHEEEEE RFAITDADGKGDWLIPFQNNPRAGFSILNTLPDNKDEILVETDLNNNYKPDVVRFNVNNG EEEEECCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEECCCC RTVSVLRGSDKISGGYISDADGDVRAATGWNLSDNAIDLYARAKGDSDWKLVKQISPKSR CEEEEEECCCCCCCCEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHHHHCCCCCC ESYSFIGFSKENPDEIYVNANQGQDKTGIYLYNIKTGQYSERLFGLENVDADGVIQKKDG CCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCHHHHHCCCCCCCCCCEEEECCC SLVGFGYSAKWPQRYLTDANEQAIYDGLDKLFEGKFVSIISRSNDDSVMVVSASSDKDPG CEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCCCC TYYLVLNKSKIETIGSKLPFVDQEKLGSVKYISYKARDGRKVYAYVTLPKGKGPFPAVVL EEEEEEECCHHHHHHCCCCCCCHHHCCCEEEEEEECCCCCEEEEEEEECCCCCCCCEEEE PHGGPWVRDTIVFDDWAQLLASNGYVVIQPNYRGSTGYGIEHWTAGDNNWGLKMQDDLDD CCCCCCEEEEEEHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCCCCCEEECCCCHH AAMYLVEKGLATKDKLAMFGWSYGGYAAFAASMRDNNIYQCTVAGAGVSDLSKINATLNE HHHHHHHCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCH NRFLSRLQRPTITGVSPLSQVEKVNVPILVVHGDIDGRVPVAHSREFVEKLKDLKKDHKY HHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCE VELVDADHFSDTLFYEHKMAFYSELIDWLDNKCGLK EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10382966; 12037315 [H]