| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is ppk [H]
Identifier: 119775146
GI number: 119775146
Start: 2443352
End: 2445544
Strand: Direct
Name: ppk [H]
Synonym: Sama_2011
Alternate gene names: 119775146
Gene position: 2443352-2445544 (Clockwise)
Preceding gene: 119775143
Following gene: 119775147
Centisome position: 56.74
GC content: 51.62
Gene sequence:
>2193_bases ATGGCTGCATCACACGCTCAAAGGAGTTTTCGAGTGTCTCCCAATACAGACAAGATGTTTATCGACAAGGAGCTTTCCTG GCTGTCTTTCAACGAACGAGTGTTGCAGGAAGCCTGCGACCCCGAAGTGCCTCTTGTTGAGCGGATCAGGTTCCTGGGGA TTTTTTCCAGCAATATGGACGAATTCTTCCGGGTGCGGGTCGCATCTGTTCGCAGGGGCATTTTGCTCTCCAGCCTGCAG GATGGCCGTAACAACAGCCGTCACCTGATGGCAAAAATTCAAACCCGTGTGCTCACCCTGCAGGAAAGATTCGACATCAT TTATGGCGAATTGATGCGTGAGCTGGTGCGGCGCAACATACTGCTTATCAATGAATCTCAGCTGAGCGACTTTCAAAGCC AGTGGCTCAAGTCGCACTTCCGCGACCAGTTAAAACGCCATATAGCGCCCCTTATCGTCAGTAACCACAGGGCTTTGGTC AAACATATCACCGATAACGCCACCTACCTTGCCGTGTGCTTACACAGTAAAGACCGCAGGCAATATGCATTGGTGGAAGT GCCGACCAAAAACGTTCCTCGCTTTATCGAATTGCCCACTGAAAAATCCAAGGCGAAAAAGCACCTCATTCTGCTTGATA ACATCATTCGCCACTGTCTGAACGACCTTTTTTCGCCGTTTTTCGAGTACGAGAGCATAGATGCGTATTCGATGAAACTG ACCCGCGATGCCGACTTTGACGTGATTGACGAACTGGACCAAAGCCAGCTGGAAAAAATGACCCGCGGCCTGAAAAAACG CCTCACCGCCGAGCCGGTGCGCTTGGTATACGACAAAGACATGCCAGAGCACATGCTGGTGATGCTTAAAGAGCAGCTTG GGATCAGCTCCACCGAGTGTCTGGTACCCGGTGGCCGCTATCACAGCTTTAAAGACTTTATCGCCTTCCCAAACCCGGGT CGCAAGTATCTTGAAAACGACAAGATTCACGCCCTGGACAGCGCCGGCTTTCAGCGCTGTGGCAACAGCTTCGATGCCAT CGCCCGCGGCGACATTATGCTCAACTACCCCTACCACAAGTTTTCACACTTCACCGAGCTGGTGCGTCAGGCGGCCTTTG ACCCCGCGGTGAAATTCATCAAAATCAATCTCTACCGGGTGGCGAAAAAATCGCGGGTGATGCAGTCGCTGATTGATGCG GTGAAAAACGGTAAACAGGTGACGGCAGTGATTGAGCTACGGGCCCGTTTTGATGAAGAGCACAACATCGAATGGACCCG CATACTGGCAGAATCCGGCGTCAAGGTACACCATGGGATCCCAAGCCTGAAGGTACACTCCAAGCTCTGTCTCATCGGCC GAGAAGAACACGGCGAAACCCGCCTCTACTGCCACGTGGGCTCGGGTAACTTCAACGAAGGCACCGCCAAGGTATATACG GATTTATCCCTGTTTACCGCCAATCAGGAAATCGCGCGCGAAGTTGAGCAGGTATTTGATTTAATTGAGCATCCATACCG GCGTGATAACTTCAAACACCTGATTGTCTCCCCCTTCGATGCCCGCCAGAAACTCATCTCATTGATTGAGGATGAAATCC TCAATGCCCGAATGGGCGGCAAGGCCGGGATCACATTGAAACTCAACAACCTGGTCGATGAGCAGCTTATCGGCAAGCTG TACGATGCCTCCATGGCCGGGGTGAAAATTCGGCTGATCATTCGCGGTATGTGCTCATTGGTGCCACAAATTCCCGGGAT CAGTGACAATATCGATGTCATCAGTATTGTCGACAGGTTCCTGGAGCACTCACGGGTCATGCTGTTTCACGCCGGTGGTG AAAATAAACTCTTCCTCTGCTCTGCCGACTGGATGAGCCGCAATATTGACAGCCGTATCGAGGTAACCACACCGATTTAC GACCCTCAGTTGAAACAGATGGTGATGGACATATTGGCCCTTCAGCTATCGGACAATACCAAAGCCCGAATAATCAACAA AGAGCAGAGCAACCCCTACCGTCACCGGGGAAATAAACGTAAAGTACGCTCCCAATTGGCGATATACCAGTATCTTTGCC ACTATGAAAAACTTCTCAAGGCGCGTATCGACGCCGAGGCAGAAGCCTTAAAGAGCGAATCCGCGCCGATTGCAGAGCAA GAAGATAACAGGGATCTGCCGGTCACCAGCTGA
Upstream 100 bases:
>100_bases AAGCCAATCACTTGTTACTGATTTTGCTTCAGTGACACCCCCGGGTTCCCAGCACGACAAATGACTGTTATCGTGTGCTG GCCCGGCGACATTCGCTGGC
Downstream 100 bases:
>100_bases TCCACGAGGGAGAAACAGCTTGTCATCATCAAACCAGCGACACTTCGTTGCTATCGATATGGGTTCGAACAGCTTCCATT TGATGATTGCCCGTGAGCAA
Product: polyphosphate kinase
Products: NA
Alternate protein names: ATP-polyphosphate phosphotransferase; Polyphosphoric acid kinase [H]
Number of amino acids: Translated: 730; Mature: 729
Protein sequence:
>730_residues MAASHAQRSFRVSPNTDKMFIDKELSWLSFNERVLQEACDPEVPLVERIRFLGIFSSNMDEFFRVRVASVRRGILLSSLQ DGRNNSRHLMAKIQTRVLTLQERFDIIYGELMRELVRRNILLINESQLSDFQSQWLKSHFRDQLKRHIAPLIVSNHRALV KHITDNATYLAVCLHSKDRRQYALVEVPTKNVPRFIELPTEKSKAKKHLILLDNIIRHCLNDLFSPFFEYESIDAYSMKL TRDADFDVIDELDQSQLEKMTRGLKKRLTAEPVRLVYDKDMPEHMLVMLKEQLGISSTECLVPGGRYHSFKDFIAFPNPG RKYLENDKIHALDSAGFQRCGNSFDAIARGDIMLNYPYHKFSHFTELVRQAAFDPAVKFIKINLYRVAKKSRVMQSLIDA VKNGKQVTAVIELRARFDEEHNIEWTRILAESGVKVHHGIPSLKVHSKLCLIGREEHGETRLYCHVGSGNFNEGTAKVYT DLSLFTANQEIAREVEQVFDLIEHPYRRDNFKHLIVSPFDARQKLISLIEDEILNARMGGKAGITLKLNNLVDEQLIGKL YDASMAGVKIRLIIRGMCSLVPQIPGISDNIDVISIVDRFLEHSRVMLFHAGGENKLFLCSADWMSRNIDSRIEVTTPIY DPQLKQMVMDILALQLSDNTKARIINKEQSNPYRHRGNKRKVRSQLAIYQYLCHYEKLLKARIDAEAEALKSESAPIAEQ EDNRDLPVTS
Sequences:
>Translated_730_residues MAASHAQRSFRVSPNTDKMFIDKELSWLSFNERVLQEACDPEVPLVERIRFLGIFSSNMDEFFRVRVASVRRGILLSSLQ DGRNNSRHLMAKIQTRVLTLQERFDIIYGELMRELVRRNILLINESQLSDFQSQWLKSHFRDQLKRHIAPLIVSNHRALV KHITDNATYLAVCLHSKDRRQYALVEVPTKNVPRFIELPTEKSKAKKHLILLDNIIRHCLNDLFSPFFEYESIDAYSMKL TRDADFDVIDELDQSQLEKMTRGLKKRLTAEPVRLVYDKDMPEHMLVMLKEQLGISSTECLVPGGRYHSFKDFIAFPNPG RKYLENDKIHALDSAGFQRCGNSFDAIARGDIMLNYPYHKFSHFTELVRQAAFDPAVKFIKINLYRVAKKSRVMQSLIDA VKNGKQVTAVIELRARFDEEHNIEWTRILAESGVKVHHGIPSLKVHSKLCLIGREEHGETRLYCHVGSGNFNEGTAKVYT DLSLFTANQEIAREVEQVFDLIEHPYRRDNFKHLIVSPFDARQKLISLIEDEILNARMGGKAGITLKLNNLVDEQLIGKL YDASMAGVKIRLIIRGMCSLVPQIPGISDNIDVISIVDRFLEHSRVMLFHAGGENKLFLCSADWMSRNIDSRIEVTTPIY DPQLKQMVMDILALQLSDNTKARIINKEQSNPYRHRGNKRKVRSQLAIYQYLCHYEKLLKARIDAEAEALKSESAPIAEQ EDNRDLPVTS >Mature_729_residues AASHAQRSFRVSPNTDKMFIDKELSWLSFNERVLQEACDPEVPLVERIRFLGIFSSNMDEFFRVRVASVRRGILLSSLQD GRNNSRHLMAKIQTRVLTLQERFDIIYGELMRELVRRNILLINESQLSDFQSQWLKSHFRDQLKRHIAPLIVSNHRALVK HITDNATYLAVCLHSKDRRQYALVEVPTKNVPRFIELPTEKSKAKKHLILLDNIIRHCLNDLFSPFFEYESIDAYSMKLT RDADFDVIDELDQSQLEKMTRGLKKRLTAEPVRLVYDKDMPEHMLVMLKEQLGISSTECLVPGGRYHSFKDFIAFPNPGR KYLENDKIHALDSAGFQRCGNSFDAIARGDIMLNYPYHKFSHFTELVRQAAFDPAVKFIKINLYRVAKKSRVMQSLIDAV KNGKQVTAVIELRARFDEEHNIEWTRILAESGVKVHHGIPSLKVHSKLCLIGREEHGETRLYCHVGSGNFNEGTAKVYTD LSLFTANQEIAREVEQVFDLIEHPYRRDNFKHLIVSPFDARQKLISLIEDEILNARMGGKAGITLKLNNLVDEQLIGKLY DASMAGVKIRLIIRGMCSLVPQIPGISDNIDVISIVDRFLEHSRVMLFHAGGENKLFLCSADWMSRNIDSRIEVTTPIYD PQLKQMVMDILALQLSDNTKARIINKEQSNPYRHRGNKRKVRSQLAIYQYLCHYEKLLKARIDAEAEALKSESAPIAEQE DNRDLPVTS
Specific function: Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) [H]
COG id: COG0855
COG function: function code P; Polyphosphate kinase
Gene ontology:
Cell location: Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PLD phosphodiesterase domain [H]
Homologues:
Organism=Escherichia coli, GI1788847, Length=683, Percent_Identity=53.8799414348463, Blast_Score=772, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001736 - InterPro: IPR003414 [H]
Pfam domain/function: PF02503 PP_kinase [H]
EC number: =2.7.4.1 [H]
Molecular weight: Translated: 84101; Mature: 83970
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAASHAQRSFRVSPNTDKMFIDKELSWLSFNERVLQEACDPEVPLVERIRFLGIFSSNMD CCCCCCCCCEECCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH EFFRVRVASVRRGILLSSLQDGRNNSRHLMAKIQTRVLTLQERFDIIYGELMRELVRRNI HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE LLINESQLSDFQSQWLKSHFRDQLKRHIAPLIVSNHRALVKHITDNATYLAVCLHSKDRR EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCC QYALVEVPTKNVPRFIELPTEKSKAKKHLILLDNIIRHCLNDLFSPFFEYESIDAYSMKL CEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE TRDADFDVIDELDQSQLEKMTRGLKKRLTAEPVRLVYDKDMPEHMLVMLKEQLGISSTEC ECCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCE LVPGGRYHSFKDFIAFPNPGRKYLENDKIHALDSAGFQRCGNSFDAIARGDIMLNYPYHK ECCCCCCCCHHHHCCCCCCCHHHHCCCCEEEEHHHHHHHHCCCCCCEECCCEEEECCHHH FSHFTELVRQAAFDPAVKFIKINLYRVAKKSRVMQSLIDAVKNGKQVTAVIELRARFDEE HHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCC HNIEWTRILAESGVKVHHGIPSLKVHSKLCLIGREEHGETRLYCHVGSGNFNEGTAKVYT CCCHHHHHHHHCCCEEECCCCCCEECCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEE DLSLFTANQEIAREVEQVFDLIEHPYRRDNFKHLIVSPFDARQKLISLIEDEILNARMGG EHHHEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCC KAGITLKLNNLVDEQLIGKLYDASMAGVKIRLIIRGMCSLVPQIPGISDNIDVISIVDRF CCEEEEEEHHHHHHHHHHHHHCCHHCCEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH LEHSRVMLFHAGGENKLFLCSADWMSRNIDSRIEVTTPIYDPQLKQMVMDILALQLSDNT HCCCEEEEEEECCCCEEEEEECHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCC KARIINKEQSNPYRHRGNKRKVRSQLAIYQYLCHYEKLLKARIDAEAEALKSESAPIAEQ CEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCC EDNRDLPVTS CCCCCCCCCC >Mature Secondary Structure AASHAQRSFRVSPNTDKMFIDKELSWLSFNERVLQEACDPEVPLVERIRFLGIFSSNMD CCCCCCCCEECCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH EFFRVRVASVRRGILLSSLQDGRNNSRHLMAKIQTRVLTLQERFDIIYGELMRELVRRNI HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE LLINESQLSDFQSQWLKSHFRDQLKRHIAPLIVSNHRALVKHITDNATYLAVCLHSKDRR EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCC QYALVEVPTKNVPRFIELPTEKSKAKKHLILLDNIIRHCLNDLFSPFFEYESIDAYSMKL CEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE TRDADFDVIDELDQSQLEKMTRGLKKRLTAEPVRLVYDKDMPEHMLVMLKEQLGISSTEC ECCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCE LVPGGRYHSFKDFIAFPNPGRKYLENDKIHALDSAGFQRCGNSFDAIARGDIMLNYPYHK ECCCCCCCCHHHHCCCCCCCHHHHCCCCEEEEHHHHHHHHCCCCCCEECCCEEEECCHHH FSHFTELVRQAAFDPAVKFIKINLYRVAKKSRVMQSLIDAVKNGKQVTAVIELRARFDEE HHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCC HNIEWTRILAESGVKVHHGIPSLKVHSKLCLIGREEHGETRLYCHVGSGNFNEGTAKVYT CCCHHHHHHHHCCCEEECCCCCCEECCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEE DLSLFTANQEIAREVEQVFDLIEHPYRRDNFKHLIVSPFDARQKLISLIEDEILNARMGG EHHHEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCC KAGITLKLNNLVDEQLIGKLYDASMAGVKIRLIIRGMCSLVPQIPGISDNIDVISIVDRF CCEEEEEEHHHHHHHHHHHHHCCHHCCEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH LEHSRVMLFHAGGENKLFLCSADWMSRNIDSRIEVTTPIYDPQLKQMVMDILALQLSDNT HCCCEEEEEEECCCCEEEEEECHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCC KARIINKEQSNPYRHRGNKRKVRSQLAIYQYLCHYEKLLKARIDAEAEALKSESAPIAEQ CEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCC EDNRDLPVTS CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12620739 [H]