Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is ppk [H]

Identifier: 119775146

GI number: 119775146

Start: 2443352

End: 2445544

Strand: Direct

Name: ppk [H]

Synonym: Sama_2011

Alternate gene names: 119775146

Gene position: 2443352-2445544 (Clockwise)

Preceding gene: 119775143

Following gene: 119775147

Centisome position: 56.74

GC content: 51.62

Gene sequence:

>2193_bases
ATGGCTGCATCACACGCTCAAAGGAGTTTTCGAGTGTCTCCCAATACAGACAAGATGTTTATCGACAAGGAGCTTTCCTG
GCTGTCTTTCAACGAACGAGTGTTGCAGGAAGCCTGCGACCCCGAAGTGCCTCTTGTTGAGCGGATCAGGTTCCTGGGGA
TTTTTTCCAGCAATATGGACGAATTCTTCCGGGTGCGGGTCGCATCTGTTCGCAGGGGCATTTTGCTCTCCAGCCTGCAG
GATGGCCGTAACAACAGCCGTCACCTGATGGCAAAAATTCAAACCCGTGTGCTCACCCTGCAGGAAAGATTCGACATCAT
TTATGGCGAATTGATGCGTGAGCTGGTGCGGCGCAACATACTGCTTATCAATGAATCTCAGCTGAGCGACTTTCAAAGCC
AGTGGCTCAAGTCGCACTTCCGCGACCAGTTAAAACGCCATATAGCGCCCCTTATCGTCAGTAACCACAGGGCTTTGGTC
AAACATATCACCGATAACGCCACCTACCTTGCCGTGTGCTTACACAGTAAAGACCGCAGGCAATATGCATTGGTGGAAGT
GCCGACCAAAAACGTTCCTCGCTTTATCGAATTGCCCACTGAAAAATCCAAGGCGAAAAAGCACCTCATTCTGCTTGATA
ACATCATTCGCCACTGTCTGAACGACCTTTTTTCGCCGTTTTTCGAGTACGAGAGCATAGATGCGTATTCGATGAAACTG
ACCCGCGATGCCGACTTTGACGTGATTGACGAACTGGACCAAAGCCAGCTGGAAAAAATGACCCGCGGCCTGAAAAAACG
CCTCACCGCCGAGCCGGTGCGCTTGGTATACGACAAAGACATGCCAGAGCACATGCTGGTGATGCTTAAAGAGCAGCTTG
GGATCAGCTCCACCGAGTGTCTGGTACCCGGTGGCCGCTATCACAGCTTTAAAGACTTTATCGCCTTCCCAAACCCGGGT
CGCAAGTATCTTGAAAACGACAAGATTCACGCCCTGGACAGCGCCGGCTTTCAGCGCTGTGGCAACAGCTTCGATGCCAT
CGCCCGCGGCGACATTATGCTCAACTACCCCTACCACAAGTTTTCACACTTCACCGAGCTGGTGCGTCAGGCGGCCTTTG
ACCCCGCGGTGAAATTCATCAAAATCAATCTCTACCGGGTGGCGAAAAAATCGCGGGTGATGCAGTCGCTGATTGATGCG
GTGAAAAACGGTAAACAGGTGACGGCAGTGATTGAGCTACGGGCCCGTTTTGATGAAGAGCACAACATCGAATGGACCCG
CATACTGGCAGAATCCGGCGTCAAGGTACACCATGGGATCCCAAGCCTGAAGGTACACTCCAAGCTCTGTCTCATCGGCC
GAGAAGAACACGGCGAAACCCGCCTCTACTGCCACGTGGGCTCGGGTAACTTCAACGAAGGCACCGCCAAGGTATATACG
GATTTATCCCTGTTTACCGCCAATCAGGAAATCGCGCGCGAAGTTGAGCAGGTATTTGATTTAATTGAGCATCCATACCG
GCGTGATAACTTCAAACACCTGATTGTCTCCCCCTTCGATGCCCGCCAGAAACTCATCTCATTGATTGAGGATGAAATCC
TCAATGCCCGAATGGGCGGCAAGGCCGGGATCACATTGAAACTCAACAACCTGGTCGATGAGCAGCTTATCGGCAAGCTG
TACGATGCCTCCATGGCCGGGGTGAAAATTCGGCTGATCATTCGCGGTATGTGCTCATTGGTGCCACAAATTCCCGGGAT
CAGTGACAATATCGATGTCATCAGTATTGTCGACAGGTTCCTGGAGCACTCACGGGTCATGCTGTTTCACGCCGGTGGTG
AAAATAAACTCTTCCTCTGCTCTGCCGACTGGATGAGCCGCAATATTGACAGCCGTATCGAGGTAACCACACCGATTTAC
GACCCTCAGTTGAAACAGATGGTGATGGACATATTGGCCCTTCAGCTATCGGACAATACCAAAGCCCGAATAATCAACAA
AGAGCAGAGCAACCCCTACCGTCACCGGGGAAATAAACGTAAAGTACGCTCCCAATTGGCGATATACCAGTATCTTTGCC
ACTATGAAAAACTTCTCAAGGCGCGTATCGACGCCGAGGCAGAAGCCTTAAAGAGCGAATCCGCGCCGATTGCAGAGCAA
GAAGATAACAGGGATCTGCCGGTCACCAGCTGA

Upstream 100 bases:

>100_bases
AAGCCAATCACTTGTTACTGATTTTGCTTCAGTGACACCCCCGGGTTCCCAGCACGACAAATGACTGTTATCGTGTGCTG
GCCCGGCGACATTCGCTGGC

Downstream 100 bases:

>100_bases
TCCACGAGGGAGAAACAGCTTGTCATCATCAAACCAGCGACACTTCGTTGCTATCGATATGGGTTCGAACAGCTTCCATT
TGATGATTGCCCGTGAGCAA

Product: polyphosphate kinase

Products: NA

Alternate protein names: ATP-polyphosphate phosphotransferase; Polyphosphoric acid kinase [H]

Number of amino acids: Translated: 730; Mature: 729

Protein sequence:

>730_residues
MAASHAQRSFRVSPNTDKMFIDKELSWLSFNERVLQEACDPEVPLVERIRFLGIFSSNMDEFFRVRVASVRRGILLSSLQ
DGRNNSRHLMAKIQTRVLTLQERFDIIYGELMRELVRRNILLINESQLSDFQSQWLKSHFRDQLKRHIAPLIVSNHRALV
KHITDNATYLAVCLHSKDRRQYALVEVPTKNVPRFIELPTEKSKAKKHLILLDNIIRHCLNDLFSPFFEYESIDAYSMKL
TRDADFDVIDELDQSQLEKMTRGLKKRLTAEPVRLVYDKDMPEHMLVMLKEQLGISSTECLVPGGRYHSFKDFIAFPNPG
RKYLENDKIHALDSAGFQRCGNSFDAIARGDIMLNYPYHKFSHFTELVRQAAFDPAVKFIKINLYRVAKKSRVMQSLIDA
VKNGKQVTAVIELRARFDEEHNIEWTRILAESGVKVHHGIPSLKVHSKLCLIGREEHGETRLYCHVGSGNFNEGTAKVYT
DLSLFTANQEIAREVEQVFDLIEHPYRRDNFKHLIVSPFDARQKLISLIEDEILNARMGGKAGITLKLNNLVDEQLIGKL
YDASMAGVKIRLIIRGMCSLVPQIPGISDNIDVISIVDRFLEHSRVMLFHAGGENKLFLCSADWMSRNIDSRIEVTTPIY
DPQLKQMVMDILALQLSDNTKARIINKEQSNPYRHRGNKRKVRSQLAIYQYLCHYEKLLKARIDAEAEALKSESAPIAEQ
EDNRDLPVTS

Sequences:

>Translated_730_residues
MAASHAQRSFRVSPNTDKMFIDKELSWLSFNERVLQEACDPEVPLVERIRFLGIFSSNMDEFFRVRVASVRRGILLSSLQ
DGRNNSRHLMAKIQTRVLTLQERFDIIYGELMRELVRRNILLINESQLSDFQSQWLKSHFRDQLKRHIAPLIVSNHRALV
KHITDNATYLAVCLHSKDRRQYALVEVPTKNVPRFIELPTEKSKAKKHLILLDNIIRHCLNDLFSPFFEYESIDAYSMKL
TRDADFDVIDELDQSQLEKMTRGLKKRLTAEPVRLVYDKDMPEHMLVMLKEQLGISSTECLVPGGRYHSFKDFIAFPNPG
RKYLENDKIHALDSAGFQRCGNSFDAIARGDIMLNYPYHKFSHFTELVRQAAFDPAVKFIKINLYRVAKKSRVMQSLIDA
VKNGKQVTAVIELRARFDEEHNIEWTRILAESGVKVHHGIPSLKVHSKLCLIGREEHGETRLYCHVGSGNFNEGTAKVYT
DLSLFTANQEIAREVEQVFDLIEHPYRRDNFKHLIVSPFDARQKLISLIEDEILNARMGGKAGITLKLNNLVDEQLIGKL
YDASMAGVKIRLIIRGMCSLVPQIPGISDNIDVISIVDRFLEHSRVMLFHAGGENKLFLCSADWMSRNIDSRIEVTTPIY
DPQLKQMVMDILALQLSDNTKARIINKEQSNPYRHRGNKRKVRSQLAIYQYLCHYEKLLKARIDAEAEALKSESAPIAEQ
EDNRDLPVTS
>Mature_729_residues
AASHAQRSFRVSPNTDKMFIDKELSWLSFNERVLQEACDPEVPLVERIRFLGIFSSNMDEFFRVRVASVRRGILLSSLQD
GRNNSRHLMAKIQTRVLTLQERFDIIYGELMRELVRRNILLINESQLSDFQSQWLKSHFRDQLKRHIAPLIVSNHRALVK
HITDNATYLAVCLHSKDRRQYALVEVPTKNVPRFIELPTEKSKAKKHLILLDNIIRHCLNDLFSPFFEYESIDAYSMKLT
RDADFDVIDELDQSQLEKMTRGLKKRLTAEPVRLVYDKDMPEHMLVMLKEQLGISSTECLVPGGRYHSFKDFIAFPNPGR
KYLENDKIHALDSAGFQRCGNSFDAIARGDIMLNYPYHKFSHFTELVRQAAFDPAVKFIKINLYRVAKKSRVMQSLIDAV
KNGKQVTAVIELRARFDEEHNIEWTRILAESGVKVHHGIPSLKVHSKLCLIGREEHGETRLYCHVGSGNFNEGTAKVYTD
LSLFTANQEIAREVEQVFDLIEHPYRRDNFKHLIVSPFDARQKLISLIEDEILNARMGGKAGITLKLNNLVDEQLIGKLY
DASMAGVKIRLIIRGMCSLVPQIPGISDNIDVISIVDRFLEHSRVMLFHAGGENKLFLCSADWMSRNIDSRIEVTTPIYD
PQLKQMVMDILALQLSDNTKARIINKEQSNPYRHRGNKRKVRSQLAIYQYLCHYEKLLKARIDAEAEALKSESAPIAEQE
DNRDLPVTS

Specific function: Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) [H]

COG id: COG0855

COG function: function code P; Polyphosphate kinase

Gene ontology:

Cell location: Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PLD phosphodiesterase domain [H]

Homologues:

Organism=Escherichia coli, GI1788847, Length=683, Percent_Identity=53.8799414348463, Blast_Score=772, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736
- InterPro:   IPR003414 [H]

Pfam domain/function: PF02503 PP_kinase [H]

EC number: =2.7.4.1 [H]

Molecular weight: Translated: 84101; Mature: 83970

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASHAQRSFRVSPNTDKMFIDKELSWLSFNERVLQEACDPEVPLVERIRFLGIFSSNMD
CCCCCCCCCEECCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH
EFFRVRVASVRRGILLSSLQDGRNNSRHLMAKIQTRVLTLQERFDIIYGELMRELVRRNI
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
LLINESQLSDFQSQWLKSHFRDQLKRHIAPLIVSNHRALVKHITDNATYLAVCLHSKDRR
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCC
QYALVEVPTKNVPRFIELPTEKSKAKKHLILLDNIIRHCLNDLFSPFFEYESIDAYSMKL
CEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
TRDADFDVIDELDQSQLEKMTRGLKKRLTAEPVRLVYDKDMPEHMLVMLKEQLGISSTEC
ECCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCE
LVPGGRYHSFKDFIAFPNPGRKYLENDKIHALDSAGFQRCGNSFDAIARGDIMLNYPYHK
ECCCCCCCCHHHHCCCCCCCHHHHCCCCEEEEHHHHHHHHCCCCCCEECCCEEEECCHHH
FSHFTELVRQAAFDPAVKFIKINLYRVAKKSRVMQSLIDAVKNGKQVTAVIELRARFDEE
HHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCC
HNIEWTRILAESGVKVHHGIPSLKVHSKLCLIGREEHGETRLYCHVGSGNFNEGTAKVYT
CCCHHHHHHHHCCCEEECCCCCCEECCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEE
DLSLFTANQEIAREVEQVFDLIEHPYRRDNFKHLIVSPFDARQKLISLIEDEILNARMGG
EHHHEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCC
KAGITLKLNNLVDEQLIGKLYDASMAGVKIRLIIRGMCSLVPQIPGISDNIDVISIVDRF
CCEEEEEEHHHHHHHHHHHHHCCHHCCEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LEHSRVMLFHAGGENKLFLCSADWMSRNIDSRIEVTTPIYDPQLKQMVMDILALQLSDNT
HCCCEEEEEEECCCCEEEEEECHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCC
KARIINKEQSNPYRHRGNKRKVRSQLAIYQYLCHYEKLLKARIDAEAEALKSESAPIAEQ
CEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCC
EDNRDLPVTS
CCCCCCCCCC
>Mature Secondary Structure 
AASHAQRSFRVSPNTDKMFIDKELSWLSFNERVLQEACDPEVPLVERIRFLGIFSSNMD
CCCCCCCCEECCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH
EFFRVRVASVRRGILLSSLQDGRNNSRHLMAKIQTRVLTLQERFDIIYGELMRELVRRNI
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
LLINESQLSDFQSQWLKSHFRDQLKRHIAPLIVSNHRALVKHITDNATYLAVCLHSKDRR
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCC
QYALVEVPTKNVPRFIELPTEKSKAKKHLILLDNIIRHCLNDLFSPFFEYESIDAYSMKL
CEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
TRDADFDVIDELDQSQLEKMTRGLKKRLTAEPVRLVYDKDMPEHMLVMLKEQLGISSTEC
ECCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCE
LVPGGRYHSFKDFIAFPNPGRKYLENDKIHALDSAGFQRCGNSFDAIARGDIMLNYPYHK
ECCCCCCCCHHHHCCCCCCCHHHHCCCCEEEEHHHHHHHHCCCCCCEECCCEEEECCHHH
FSHFTELVRQAAFDPAVKFIKINLYRVAKKSRVMQSLIDAVKNGKQVTAVIELRARFDEE
HHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCC
HNIEWTRILAESGVKVHHGIPSLKVHSKLCLIGREEHGETRLYCHVGSGNFNEGTAKVYT
CCCHHHHHHHHCCCEEECCCCCCEECCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEE
DLSLFTANQEIAREVEQVFDLIEHPYRRDNFKHLIVSPFDARQKLISLIEDEILNARMGG
EHHHEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCC
KAGITLKLNNLVDEQLIGKLYDASMAGVKIRLIIRGMCSLVPQIPGISDNIDVISIVDRF
CCEEEEEEHHHHHHHHHHHHHCCHHCCEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LEHSRVMLFHAGGENKLFLCSADWMSRNIDSRIEVTTPIYDPQLKQMVMDILALQLSDNT
HCCCEEEEEEECCCCEEEEEECHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCC
KARIINKEQSNPYRHRGNKRKVRSQLAIYQYLCHYEKLLKARIDAEAEALKSESAPIAEQ
CEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCC
EDNRDLPVTS
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]