| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yceF [C]
Identifier: 119775121
GI number: 119775121
Start: 2413483
End: 2414082
Strand: Direct
Name: yceF [C]
Synonym: Sama_1986
Alternate gene names: 119775121
Gene position: 2413483-2414082 (Clockwise)
Preceding gene: 119775109
Following gene: 119775124
Centisome position: 56.05
GC content: 53.0
Gene sequence:
>600_bases ATGCGACCCTTAATTCTCGCCTCTACCTCAACTTTTCGGGCAGCACTGCTTGAAAAACTGGGCTTGCCATTTCAAGCCTT GGCGCCGCACACCGATGAGACGCCCCTGCCCGGAGAATCTGCCATCGCACTGACCGAGCGGCTTGCCATTGCCAAGGCCA AAGCCCTGGCATGTGACGTGCCAACCAATGCGCTCATTATCGGTTCTGATCAGGTGGCAGTGGTTGACGGGAAGATTGTT GGCAAACCGCTGAGCGAAGAAAATGCCATTAATCAGCTAAAGGCGCAGCGCGGAAAAAGCATTGTCTTTTATACGGCGCT CGCCCTGCACGATGTTGCAAAGGACACTACCCTCTCGCTGGTAGAGCCTTTTACCGTGCACTTTCGTGACCTCAGTGATG ACGAAATAGTGCAATACGTAAGAAAAGAGCAACCCCTGTGGTGTGCTGGCAGCTTCAAATCTGAAGGATTGGGTATTTGC CTGTTTGAACGCCTCGAAGGCCGCGACCCCAATACTTTGATTGGCTTACCCCTGATAGCCTTGGTGGACTTACTCAAACA ATCCGGGCTTTGTGTGCTTACGGGCGCTAGCCCTCGATAA
Upstream 100 bases:
>100_bases GGCTGATTGAGGTTAACATGAAGGCTAACTATGCACGCAGGTTAACTATGCACGGTTTAAAATACCCAGTTAACAGTTCA GACCCAAAGGCCAGTATCCA
Downstream 100 bases:
>100_bases TGAGTTTTAGACGATATCAGGAGCTTATTACAGAGGTGACGCCATTATCTGTGTGAACGCAATCGGCGCAATCAGTCTGC GAAGAGGGCATACATCAGGA
Product: septum formation protein Maf
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 199; Mature: 199
Protein sequence:
>199_residues MRPLILASTSTFRAALLEKLGLPFQALAPHTDETPLPGESAIALTERLAIAKAKALACDVPTNALIIGSDQVAVVDGKIV GKPLSEENAINQLKAQRGKSIVFYTALALHDVAKDTTLSLVEPFTVHFRDLSDDEIVQYVRKEQPLWCAGSFKSEGLGIC LFERLEGRDPNTLIGLPLIALVDLLKQSGLCVLTGASPR
Sequences:
>Translated_199_residues MRPLILASTSTFRAALLEKLGLPFQALAPHTDETPLPGESAIALTERLAIAKAKALACDVPTNALIIGSDQVAVVDGKIV GKPLSEENAINQLKAQRGKSIVFYTALALHDVAKDTTLSLVEPFTVHFRDLSDDEIVQYVRKEQPLWCAGSFKSEGLGIC LFERLEGRDPNTLIGLPLIALVDLLKQSGLCVLTGASPR >Mature_199_residues MRPLILASTSTFRAALLEKLGLPFQALAPHTDETPLPGESAIALTERLAIAKAKALACDVPTNALIIGSDQVAVVDGKIV GKPLSEENAINQLKAQRGKSIVFYTALALHDVAKDTTLSLVEPFTVHFRDLSDDEIVQYVRKEQPLWCAGSFKSEGLGIC LFERLEGRDPNTLIGLPLIALVDLLKQSGLCVLTGASPR
Specific function: Unknown
COG id: COG0424
COG function: function code D; Nucleotide-binding protein implicated in inhibition of septum formation
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the maf family [H]
Homologues:
Organism=Homo sapiens, GI117553627, Length=190, Percent_Identity=27.8947368421053, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87081830, Length=195, Percent_Identity=60, Blast_Score=215, Evalue=1e-57, Organism=Escherichia coli, GI1789646, Length=185, Percent_Identity=32.972972972973, Blast_Score=97, Evalue=1e-21, Organism=Caenorhabditis elegans, GI193202443, Length=183, Percent_Identity=31.1475409836066, Blast_Score=77, Evalue=7e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003697 [H]
Pfam domain/function: PF02545 Maf [H]
EC number: NA
Molecular weight: Translated: 21384; Mature: 21384
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPLILASTSTFRAALLEKLGLPFQALAPHTDETPLPGESAIALTERLAIAKAKALACDV CCCEEEECCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECC PTNALIIGSDQVAVVDGKIVGKPLSEENAINQLKAQRGKSIVFYTALALHDVAKDTTLSL CCCEEEECCCCEEEECCEEECCCCCHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCHHHH VEPFTVHFRDLSDDEIVQYVRKEQPLWCAGSFKSEGLGICLFERLEGRDPNTLIGLPLIA HCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEHHCCCCCCEEEHHHHHH LVDLLKQSGLCVLTGASPR HHHHHHHCCEEEEECCCCC >Mature Secondary Structure MRPLILASTSTFRAALLEKLGLPFQALAPHTDETPLPGESAIALTERLAIAKAKALACDV CCCEEEECCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECC PTNALIIGSDQVAVVDGKIVGKPLSEENAINQLKAQRGKSIVFYTALALHDVAKDTTLSL CCCEEEECCCCEEEECCEEECCCCCHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCHHHH VEPFTVHFRDLSDDEIVQYVRKEQPLWCAGSFKSEGLGICLFERLEGRDPNTLIGLPLIA HCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEHHCCCCCCEEEHHHHHH LVDLLKQSGLCVLTGASPR HHHHHHHCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA