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The map label for this gene is sodB [H]

Identifier: 119775055

GI number: 119775055

Start: 2346731

End: 2347315

Strand: Direct

Name: sodB [H]

Synonym: Sama_1920

Alternate gene names: 119775055

Gene position: 2346731-2347315 (Clockwise)

Preceding gene: 119775053

Following gene: 119775056

Centisome position: 54.5

GC content: 52.14

Gene sequence:

>585_bases
ATGGCTTTCGAATTACCCCCACTGCCATACGCAAAGAACGCACTGGAACCCCATATTTCCCAGGAAACTATCGAGTACCA
CTACGGCAAGCACCACAACACCTACGTGGTTAAGCTGAACGGCCTGATCCCAGGTACCGAGTTCGAAGGCAAGAGCCTGG
AAGAAATCGTAAAGACCTCCACCGGTGGTGTGTTCAACAACGCAGCTCAGGTATGGAACCACACCTTCTACTGGAACTGT
CTGGCCCCTAACGGCGGTGGCGCTGCCACTGGTCCGGTTGCCGATGCCATCAATGCAGCTTTCGGTTCTTTCGAAGAATT
CAAAGCCAAGTTCACCGACGCCGCAGTGAACAACTTCGGTAGTGCCTGGACTTGGTTGGTTAAGAAAGCTGACGGCACAG
TTGCTATTGTAAACACCAGCAACGCCGCCACTCCGCTGACCGATGATTCTGTTACTCCGATCCTGACTGTGGATGTGTGG
GAACACGCTTATTACATCGATTATCGCAACGTACGTCCTGATTACCTGGCCCACTTCTGGGAACTGGTAAACTGGGACTT
CGTAAACCAGAACTTCGCTGGTTAA

Upstream 100 bases:

>100_bases
AAAACCCCAAAGAATGATTCACATCACAGATTTTCCGAGTACAATATTGGCCAGTGAGCAAGAACGTGAAAAACGTATAA
TCGTCCATGGAGAGATACTA

Downstream 100 bases:

>100_bases
TACAAGCCGTTGCCTGATTAAAAAGGAGCCTTGGTGGCTCCTTTTTTATTATAATTTTTCCTTAGTCAATCGCACTACAT
CCCCTATTCCCTCGAATCAA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MAFELPPLPYAKNALEPHISQETIEYHYGKHHNTYVVKLNGLIPGTEFEGKSLEEIVKTSTGGVFNNAAQVWNHTFYWNC
LAPNGGGAATGPVADAINAAFGSFEEFKAKFTDAAVNNFGSAWTWLVKKADGTVAIVNTSNAATPLTDDSVTPILTVDVW
EHAYYIDYRNVRPDYLAHFWELVNWDFVNQNFAG

Sequences:

>Translated_194_residues
MAFELPPLPYAKNALEPHISQETIEYHYGKHHNTYVVKLNGLIPGTEFEGKSLEEIVKTSTGGVFNNAAQVWNHTFYWNC
LAPNGGGAATGPVADAINAAFGSFEEFKAKFTDAAVNNFGSAWTWLVKKADGTVAIVNTSNAATPLTDDSVTPILTVDVW
EHAYYIDYRNVRPDYLAHFWELVNWDFVNQNFAG
>Mature_193_residues
AFELPPLPYAKNALEPHISQETIEYHYGKHHNTYVVKLNGLIPGTEFEGKSLEEIVKTSTGGVFNNAAQVWNHTFYWNCL
APNGGGAATGPVADAINAAFGSFEEFKAKFTDAAVNNFGSAWTWLVKKADGTVAIVNTSNAATPLTDDSVTPILTVDVWE
HAYYIDYRNVRPDYLAHFWELVNWDFVNQNFAG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=197, Percent_Identity=39.5939086294416, Blast_Score=145, Evalue=2e-35,
Organism=Homo sapiens, GI67782305, Length=197, Percent_Identity=39.5939086294416, Blast_Score=145, Evalue=2e-35,
Organism=Homo sapiens, GI67782309, Length=189, Percent_Identity=35.4497354497354, Blast_Score=114, Evalue=7e-26,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=76.1658031088083, Blast_Score=310, Evalue=3e-86,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=40.5797101449275, Blast_Score=157, Evalue=4e-40,
Organism=Caenorhabditis elegans, GI17569479, Length=192, Percent_Identity=35.4166666666667, Blast_Score=124, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17506561, Length=192, Percent_Identity=35.4166666666667, Blast_Score=122, Evalue=8e-29,
Organism=Saccharomyces cerevisiae, GI6321796, Length=209, Percent_Identity=33.0143540669856, Blast_Score=105, Evalue=6e-24,
Organism=Drosophila melanogaster, GI17136812, Length=195, Percent_Identity=37.9487179487179, Blast_Score=127, Evalue=5e-30,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21506; Mature: 21375

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPPLPYAKNALEPHISQETIEYHYGKHHNTYVVKLNGLIPGTEFEGKSLEEIVKTS
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHC
TGGVFNNAAQVWNHTFYWNCLAPNGGGAATGPVADAINAAFGSFEEFKAKFTDAAVNNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
SAWTWLVKKADGTVAIVNTSNAATPLTDDSVTPILTVDVWEHAYYIDYRNVRPDYLAHFW
CEEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHH
ELVNWDFVNQNFAG
HHHCCCCCCCCCCC
>Mature Secondary Structure 
AFELPPLPYAKNALEPHISQETIEYHYGKHHNTYVVKLNGLIPGTEFEGKSLEEIVKTS
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHC
TGGVFNNAAQVWNHTFYWNCLAPNGGGAATGPVADAINAAFGSFEEFKAKFTDAAVNNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
SAWTWLVKKADGTVAIVNTSNAATPLTDDSVTPILTVDVWEHAYYIDYRNVRPDYLAHFW
CEEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHH
ELVNWDFVNQNFAG
HHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3542995 [H]