| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is bcp [H]
Identifier: 119775045
GI number: 119775045
Start: 2338103
End: 2338567
Strand: Direct
Name: bcp [H]
Synonym: Sama_1910
Alternate gene names: 119775045
Gene position: 2338103-2338567 (Clockwise)
Preceding gene: 119775044
Following gene: 119775048
Centisome position: 54.3
GC content: 51.83
Gene sequence:
>465_bases ATGAATACCTTAAAAGCAGGCGATAAAGCCCCGCATTTTACCTTGCCCAATCAAAATGGTGAGATGATTTCCCTGGCTGA GTGCCTTAAGAACGGGCCAGTGCTGGTGTATTTTTATCCCAAGGCGCTGACGCCCGGCTGCACCGACCAGGCCTGTGGCC TTCGCGACAGCAAGCCGCAACTGGATGCCAAGGGCGTGACTGTATTTGGCATCAGCCCTGACCCTGTGGCCAAGCTGAAA AAGTTTGAAGAAAAGCATGGTCTTAATTTCCACTTACTGTCCGATGAAGACCACGCCGTGGCCGACGCATTTGGTGTCTG GGGTGAGAAGAAATTCATGGGTAAGGTATACGATGGCATCCACCGTTTGAGCTTTATCGTAGGAACCGACGGCACCATCA CTCAGGATCTCACCAAGTTCAAAACCAAGACCCACCATGAAACCGTACTGGAAGCCCTTGGCTGA
Upstream 100 bases:
>100_bases AGCTCGAAAAGAGTATTCATGAACTGGCAAGCGACATGTCGCTGGCATGCCAGATTAAGAGAATGCAAAGCTAACCCGGT GTTAACCAAAAGGACGACTA
Downstream 100 bases:
>100_bases GTGAACTGGCGATAAAACTCGCGGTAAAATATGACATTAAAAAAGGCCCTGATGGGCCTTTTTTAATGTTACACAGAGTG ACACGTCTACACTGCAAGCT
Product: thioredoxin-dependent thiol peroxidase
Products: NA
Alternate protein names: Bacterioferritin comigratory protein homolog; Thioredoxin reductase [H]
Number of amino acids: Translated: 154; Mature: 154
Protein sequence:
>154_residues MNTLKAGDKAPHFTLPNQNGEMISLAECLKNGPVLVYFYPKALTPGCTDQACGLRDSKPQLDAKGVTVFGISPDPVAKLK KFEEKHGLNFHLLSDEDHAVADAFGVWGEKKFMGKVYDGIHRLSFIVGTDGTITQDLTKFKTKTHHETVLEALG
Sequences:
>Translated_154_residues MNTLKAGDKAPHFTLPNQNGEMISLAECLKNGPVLVYFYPKALTPGCTDQACGLRDSKPQLDAKGVTVFGISPDPVAKLK KFEEKHGLNFHLLSDEDHAVADAFGVWGEKKFMGKVYDGIHRLSFIVGTDGTITQDLTKFKTKTHHETVLEALG >Mature_154_residues MNTLKAGDKAPHFTLPNQNGEMISLAECLKNGPVLVYFYPKALTPGCTDQACGLRDSKPQLDAKGVTVFGISPDPVAKLK KFEEKHGLNFHLLSDEDHAVADAFGVWGEKKFMGKVYDGIHRLSFIVGTDGTITQDLTKFKTKTHHETVLEALG
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1788825, Length=153, Percent_Identity=59.4771241830065, Blast_Score=186, Evalue=8e-49, Organism=Saccharomyces cerevisiae, GI6322180, Length=112, Percent_Identity=44.6428571428571, Blast_Score=92, Evalue=4e-20,
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 16857; Mature: 16857
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTLKAGDKAPHFTLPNQNGEMISLAECLKNGPVLVYFYPKALTPGCTDQACGLRDSKPQ CCCCCCCCCCCCEECCCCCCCEEHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCC LDAKGVTVFGISPDPVAKLKKFEEKHGLNFHLLSDEDHAVADAFGVWGEKKFMGKVYDGI CCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHH HRLSFIVGTDGTITQDLTKFKTKTHHETVLEALG HHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNTLKAGDKAPHFTLPNQNGEMISLAECLKNGPVLVYFYPKALTPGCTDQACGLRDSKPQ CCCCCCCCCCCCEECCCCCCCEEHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCC LDAKGVTVFGISPDPVAKLKKFEEKHGLNFHLLSDEDHAVADAFGVWGEKKFMGKVYDGI CCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHH HRLSFIVGTDGTITQDLTKFKTKTHHETVLEALG HHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]