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The map label for this gene is yaiC [C]

Identifier: 119775026

GI number: 119775026

Start: 2306830

End: 2308137

Strand: Direct

Name: yaiC [C]

Synonym: Sama_1891

Alternate gene names: 119775026

Gene position: 2306830-2308137 (Clockwise)

Preceding gene: 119775025

Following gene: 119775029

Centisome position: 53.57

GC content: 47.32

Gene sequence:

>1308_bases
ATGACACTTTCCAAACGACTCAAACTCAGCGTAGTGATTTCAGGACTTTTGCTGTTTCTGCTGATGGGTATATTGCTTTA
CTTGGTCGGAATGGATGTACGCGGCTATCGTCACAGTTATTCCTATCAACAGGCCCAGGTCACCCTATCCCGGATGTCCG
GTGAACTATGGCAGCTCAATCGTTATGAAGATCTACAGGCCTTGGACAAGGCGCGCGAATTAACCCAATTACTGGATGAG
CAAATTGGTTTTCTCGAAAAGGACGCCCAGTACAACCCGTTACTGAGCCACATAAAAAAAACCAATCACAACCTGAAACT
GTTAATGCAATTGTATCCTTCAGCCCCCAGAGAAAATGTAGAAACCGCCGCCATGCTCAACGCACGATTCAACACCCTTC
TACTAACCATGCAAGACGAAATGGGGGAAATACGTCACCGCCTGGTGGAGGAGCAGTTCTATTCCAAACAGTACCTGCTG
CTACTGATTGCGGTGATCCTTTTTCTGTCGATGTCGGCGGTCATTCTGTTCAATCTCAAGACCATGTCAGTATTCAAACA
GGGAATGCTGTCCCTCGAATCAGGAATAAGAGATCTCGCCAAAGGCAATCTGGAGACACGGGTATGTGAAGATTCGGGCT
CCGAATTTACCGAGTTGTCCAAACACTTTAATTGGATGACACAGGAGTTACAGCAAATTACGGTCAGCAGAGATAAGCTG
CAGGACGAAGTCAATAAACGCACCGAAGTGCTGCAACTGCAAAAGGACAAATTAAAGTACGAAGCGGAACATGACTCGCT
CACCCGGGTGTACAGCCGTTATGCGTTTCATCGATTACTGGAGCAAAGTTTGAAACGCCTTGCTCGCTCAAATGGCACAG
GCGCTCTGCTGTTTATCGATATTGATAAGTTCAAACCCATCAATGATAACTACGGCCACAGCATTGGTGATCATGTGCTG
GTCACTGTTGCTCAGCGGATCTCCCATACCCTTCGTGAATCGGATATGGTTGCCCGTATAGGAGGAGATGAATTTATTGT
GTGGCTGGAACCCATAGAGCATACCCTGCAACTGGAGGTGGTAATCAAAAAGCTGCTGGATAAACTTCATCTGGACATTA
ATTTTGCTAATGTCCACCTGCTGATTGACGTCAGTATCGGTGCGGCTTGCTATCCCCAGGATGGTACAGGCATAGAAGAG
CTTATCAATGTTGCCGATCGCAACATGTATGCCTGTAAGCGAGGCGATCGCGACATCAAATCAGCTCGACAAGGGGCTGA
AAACCTTGCGGATGAAGGCGGTGTTTAG

Upstream 100 bases:

>100_bases
GCTATGTGGACCAGTCTCAAGCACCTGATTTTCGTGATTTTATCGATAAAACTGCACTCAGCCAGATTAGGGATACGTTC
CGCTCACATTGAGGTGAACC

Downstream 100 bases:

>100_bases
GAGCTTCTCACGCCGCAGCCACAATAACCACAGACAAAGCAGCAAATACAGGCTGGGCTCGATGATCTCAGATTTTACCG
ACCAAAGGTAATGTACAGGA

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MTLSKRLKLSVVISGLLLFLLMGILLYLVGMDVRGYRHSYSYQQAQVTLSRMSGELWQLNRYEDLQALDKARELTQLLDE
QIGFLEKDAQYNPLLSHIKKTNHNLKLLMQLYPSAPRENVETAAMLNARFNTLLLTMQDEMGEIRHRLVEEQFYSKQYLL
LLIAVILFLSMSAVILFNLKTMSVFKQGMLSLESGIRDLAKGNLETRVCEDSGSEFTELSKHFNWMTQELQQITVSRDKL
QDEVNKRTEVLQLQKDKLKYEAEHDSLTRVYSRYAFHRLLEQSLKRLARSNGTGALLFIDIDKFKPINDNYGHSIGDHVL
VTVAQRISHTLRESDMVARIGGDEFIVWLEPIEHTLQLEVVIKKLLDKLHLDINFANVHLLIDVSIGAACYPQDGTGIEE
LINVADRNMYACKRGDRDIKSARQGAENLADEGGV

Sequences:

>Translated_435_residues
MTLSKRLKLSVVISGLLLFLLMGILLYLVGMDVRGYRHSYSYQQAQVTLSRMSGELWQLNRYEDLQALDKARELTQLLDE
QIGFLEKDAQYNPLLSHIKKTNHNLKLLMQLYPSAPRENVETAAMLNARFNTLLLTMQDEMGEIRHRLVEEQFYSKQYLL
LLIAVILFLSMSAVILFNLKTMSVFKQGMLSLESGIRDLAKGNLETRVCEDSGSEFTELSKHFNWMTQELQQITVSRDKL
QDEVNKRTEVLQLQKDKLKYEAEHDSLTRVYSRYAFHRLLEQSLKRLARSNGTGALLFIDIDKFKPINDNYGHSIGDHVL
VTVAQRISHTLRESDMVARIGGDEFIVWLEPIEHTLQLEVVIKKLLDKLHLDINFANVHLLIDVSIGAACYPQDGTGIEE
LINVADRNMYACKRGDRDIKSARQGAENLADEGGV
>Mature_434_residues
TLSKRLKLSVVISGLLLFLLMGILLYLVGMDVRGYRHSYSYQQAQVTLSRMSGELWQLNRYEDLQALDKARELTQLLDEQ
IGFLEKDAQYNPLLSHIKKTNHNLKLLMQLYPSAPRENVETAAMLNARFNTLLLTMQDEMGEIRHRLVEEQFYSKQYLLL
LIAVILFLSMSAVILFNLKTMSVFKQGMLSLESGIRDLAKGNLETRVCEDSGSEFTELSKHFNWMTQELQQITVSRDKLQ
DEVNKRTEVLQLQKDKLKYEAEHDSLTRVYSRYAFHRLLEQSLKRLARSNGTGALLFIDIDKFKPINDNYGHSIGDHVLV
TVAQRISHTLRESDMVARIGGDEFIVWLEPIEHTLQLEVVIKKLLDKLHLDINFANVHLLIDVSIGAACYPQDGTGIEEL
INVADRNMYACKRGDRDIKSARQGAENLADEGGV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=34.1317365269461, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787541, Length=252, Percent_Identity=28.1746031746032, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788956, Length=212, Percent_Identity=31.1320754716981, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI145693134, Length=167, Percent_Identity=38.9221556886228, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=31.5789473684211, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788381, Length=164, Percent_Identity=32.9268292682927, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=32.9192546583851, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=33.1360946745562, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787802, Length=178, Percent_Identity=32.0224719101124, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081974, Length=104, Percent_Identity=36.5384615384615, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787816, Length=126, Percent_Identity=36.5079365079365, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788085, Length=151, Percent_Identity=28.476821192053, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787056, Length=154, Percent_Identity=33.1168831168831, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 49820; Mature: 49689

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSKRLKLSVVISGLLLFLLMGILLYLVGMDVRGYRHSYSYQQAQVTLSRMSGELWQLN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHCCHHHCCC
RYEDLQALDKARELTQLLDEQIGFLEKDAQYNPLLSHIKKTNHNLKLLMQLYPSAPRENV
CHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCH
ETAAMLNARFNTLLLTMQDEMGEIRHRLVEEQFYSKQYLLLLIAVILFLSMSAVILFNLK
HHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMSVFKQGMLSLESGIRDLAKGNLETRVCEDSGSEFTELSKHFNWMTQELQQITVSRDKL
HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QDEVNKRTEVLQLQKDKLKYEAEHDSLTRVYSRYAFHRLLEQSLKRLARSNGTGALLFID
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
IDKFKPINDNYGHSIGDHVLVTVAQRISHTLRESDMVARIGGDEFIVWLEPIEHTLQLEV
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHH
VIKKLLDKLHLDINFANVHLLIDVSIGAACYPQDGTGIEELINVADRNMYACKRGDRDIK
HHHHHHHHHHCCEEEEEEEEEEEEECCCEECCCCCCCHHHHHHHHCCCHHHHHCCCHHHH
SARQGAENLADEGGV
HHHHHHHHHHCCCCC
>Mature Secondary Structure 
TLSKRLKLSVVISGLLLFLLMGILLYLVGMDVRGYRHSYSYQQAQVTLSRMSGELWQLN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHCCHHHCCC
RYEDLQALDKARELTQLLDEQIGFLEKDAQYNPLLSHIKKTNHNLKLLMQLYPSAPRENV
CHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCH
ETAAMLNARFNTLLLTMQDEMGEIRHRLVEEQFYSKQYLLLLIAVILFLSMSAVILFNLK
HHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMSVFKQGMLSLESGIRDLAKGNLETRVCEDSGSEFTELSKHFNWMTQELQQITVSRDKL
HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QDEVNKRTEVLQLQKDKLKYEAEHDSLTRVYSRYAFHRLLEQSLKRLARSNGTGALLFID
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
IDKFKPINDNYGHSIGDHVLVTVAQRISHTLRESDMVARIGGDEFIVWLEPIEHTLQLEV
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHH
VIKKLLDKLHLDINFANVHLLIDVSIGAACYPQDGTGIEELINVADRNMYACKRGDRDIK
HHHHHHHHHHCCEEEEEEEEEEEEECCCEECCCCCCCHHHHHHHHCCCHHHHHCCCHHHH
SARQGAENLADEGGV
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]