Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775021

Identifier: 119775021

GI number: 119775021

Start: 2302018

End: 2302545

Strand: Reverse

Name: 119775021

Synonym: Sama_1886

Alternate gene names: NA

Gene position: 2302545-2302018 (Counterclockwise)

Preceding gene: 119775022

Following gene: 119775018

Centisome position: 53.47

GC content: 55.11

Gene sequence:

>528_bases
ATGAAACTGCCACTGCTGATGCTAAGTTTGCTGCTCGGCGCTGGTTGCGCCGAGGCGGTTGTAACGCCTGTGACGGAGGA
TACCAACTTACGTCAACAGCAAAACGGATTTAAGGAAAACACCATGGACATGCCACTTATTGGAGCCCTGACAGTAGAAG
GCACTGACAAACGTGGCAAACTTTTGGTTACGCTCACTGTCACTCACCAGGGCAGCAGTGTGATTACCGCGCACTTCACC
TCAGGAATGGGCGCGGATCTCTGGCTTATGGATAAGGGGCATCGCAAGGTATGGGCCTGGTCGCAGGAAATGATGTTTAC
TCAGGCATTGAGACAAACCCAAATCGCCCCCGGTGAGGTGCTGACGCATAAGTTTGCTGTGCCTCAACAAGCGCTGTCGA
GCTGTCAGGGACCCTGCCAGTTTGAGGCAATCTTTGCTGGCACCACGGAGGGGCGAAGCCCATTGATGGCCCCTGTCAGC
ATGAATGTATCCGGGTTGGCGGTGCCAGTCATCCCCCCTCGCAGCTGA

Upstream 100 bases:

>100_bases
TGGATACCGAGGCTCTGCTCAAAGGCCAACTGAAGGGCGAGACTGATAAACTCAAAGATAAGTTGAAAGATTCCCTGTTC
AAAAAGTTGGGAGGTAATCA

Downstream 100 bases:

>100_bases
TAGCAGCGGCAGTACTCAGGAAAAAGTACGTTGGGGTGTAGGAAAAGGAGCGGCGTGGCCGCTCCTTTTTATTTCGGGTC
TTGAGCTACGACAGCTATCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKLPLLMLSLLLGAGCAEAVVTPVTEDTNLRQQQNGFKENTMDMPLIGALTVEGTDKRGKLLVTLTVTHQGSSVITAHFT
SGMGADLWLMDKGHRKVWAWSQEMMFTQALRQTQIAPGEVLTHKFAVPQQALSSCQGPCQFEAIFAGTTEGRSPLMAPVS
MNVSGLAVPVIPPRS

Sequences:

>Translated_175_residues
MKLPLLMLSLLLGAGCAEAVVTPVTEDTNLRQQQNGFKENTMDMPLIGALTVEGTDKRGKLLVTLTVTHQGSSVITAHFT
SGMGADLWLMDKGHRKVWAWSQEMMFTQALRQTQIAPGEVLTHKFAVPQQALSSCQGPCQFEAIFAGTTEGRSPLMAPVS
MNVSGLAVPVIPPRS
>Mature_175_residues
MKLPLLMLSLLLGAGCAEAVVTPVTEDTNLRQQQNGFKENTMDMPLIGALTVEGTDKRGKLLVTLTVTHQGSSVITAHFT
SGMGADLWLMDKGHRKVWAWSQEMMFTQALRQTQIAPGEVLTHKFAVPQQALSSCQGPCQFEAIFAGTTEGRSPLMAPVS
MNVSGLAVPVIPPRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18849; Mature: 18849

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPLLMLSLLLGAGCAEAVVTPVTEDTNLRQQQNGFKENTMDMPLIGALTVEGTDKRGK
CCCHHHHHHHHHCCCCCHHEEECCCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCE
LLVTLTVTHQGSSVITAHFTSGMGADLWLMDKGHRKVWAWSQEMMFTQALRQTQIAPGEV
EEEEEEEEECCCEEEEEEECCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCCHH
LTHKFAVPQQALSSCQGPCQFEAIFAGTTEGRSPLMAPVSMNVSGLAVPVIPPRS
HHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEECCCCCC
>Mature Secondary Structure
MKLPLLMLSLLLGAGCAEAVVTPVTEDTNLRQQQNGFKENTMDMPLIGALTVEGTDKRGK
CCCHHHHHHHHHCCCCCHHEEECCCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCE
LLVTLTVTHQGSSVITAHFTSGMGADLWLMDKGHRKVWAWSQEMMFTQALRQTQIAPGEV
EEEEEEEEECCCEEEEEEECCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCCHH
LTHKFAVPQQALSSCQGPCQFEAIFAGTTEGRSPLMAPVSMNVSGLAVPVIPPRS
HHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA