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The map label for this gene is yeeY [H]

Identifier: 119774987

GI number: 119774987

Start: 2256261

End: 2257166

Strand: Direct

Name: yeeY [H]

Synonym: Sama_1852

Alternate gene names: 119774987

Gene position: 2256261-2257166 (Clockwise)

Preceding gene: 119774986

Following gene: 119774997

Centisome position: 52.4

GC content: 53.64

Gene sequence:

>906_bases
ATGTTCAGAGCAAAATCCACCCTCGAGCAATGGCGAATTCTGCAGGCTGTCGTAGACCATGGCGGCTATGCGCAGGCCGC
CACTGCCCTAAACAAGAGCCAATCTTCCCTTAACCATGCCGTTGCAAAGTTACAACATCAGCTGGGGGTGGAGCTTTTGG
AGGTTAGGGGACGCAAAGCCTACCTGACTCCCCGCGGGGAAGTACTGCTCAGGCGCAGCCGCTACATCACCCAGTCAGTC
ATGGAGCTTGAGCAACTTGCAGGCAATCTTGAACGCGGCTGGGAACCCAGCCTGACCATAGCCCGGGAAATTATCTATCC
CATGGATAAGCTCATCACAGCCATCAACGCTTTTTTACCCAATGGCAGAGGTACCCGGGTCTCTGTGATTGATTCGGTGC
TCAATGGCACCCATGAGTTGGTGGAAGAAAACAAGGTTGATATTGCGCTCTGCGGCGGCAATCCCCCAAAGGGACATTTG
GCACAGCCACTGTGCGTCGTCGAATTGATTTTAGTGTGTCACCCTTCCAACCCACTTGCCGCCGAGCTCAAGATCCAGGA
CGACAAGTTTCTCGCCCAGCATCTGCAAATCGTTATTCGTGATACCGCCGCCAAAACCAATAAGGATATCGGCTGGCTTA
AAGCTGAGCAGCGATGGACGGTGAGTAATTTCCACGAAGCGAAAGCCATTCTGTGTTCGGGTAGCGGCTTTTGCTGGCTG
CCAAAAGAGTTGGTTGAAAAAGAGTTGGCGTCAGGAGACTTGGTCAGACTGTATCTGACCGGAAGTGAAAGCCGGAAGAT
CCCCATTAATCTGGTTGTCCCTAGCAGAGACGATCAGGGGCCTGCGGGTGAGGCGTTGGAGCTGCTCATTCTTGCCCAGC
ATGGTATCTCATGCCAGCGCCAGTAG

Upstream 100 bases:

>100_bases
CGTCACCACACATCTTCTGTTCACAAGAGCCGGATATTTTTATTGCAAAAAATCGAATTAAAAGTGCAGTATTAAGCAAA
CTTCTTTCGATGTAGCAGCT

Downstream 100 bases:

>100_bases
CGATGATGCCGCCTTATTAGGTTGGGACTTATCGTTTTCGATTTGTGTCTTCTCGTTGGTGTCGAGATACGCAAGGATCG
CTCTCGGTGGCCCAAGCTTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MFRAKSTLEQWRILQAVVDHGGYAQAATALNKSQSSLNHAVAKLQHQLGVELLEVRGRKAYLTPRGEVLLRRSRYITQSV
MELEQLAGNLERGWEPSLTIAREIIYPMDKLITAINAFLPNGRGTRVSVIDSVLNGTHELVEENKVDIALCGGNPPKGHL
AQPLCVVELILVCHPSNPLAAELKIQDDKFLAQHLQIVIRDTAAKTNKDIGWLKAEQRWTVSNFHEAKAILCSGSGFCWL
PKELVEKELASGDLVRLYLTGSESRKIPINLVVPSRDDQGPAGEALELLILAQHGISCQRQ

Sequences:

>Translated_301_residues
MFRAKSTLEQWRILQAVVDHGGYAQAATALNKSQSSLNHAVAKLQHQLGVELLEVRGRKAYLTPRGEVLLRRSRYITQSV
MELEQLAGNLERGWEPSLTIAREIIYPMDKLITAINAFLPNGRGTRVSVIDSVLNGTHELVEENKVDIALCGGNPPKGHL
AQPLCVVELILVCHPSNPLAAELKIQDDKFLAQHLQIVIRDTAAKTNKDIGWLKAEQRWTVSNFHEAKAILCSGSGFCWL
PKELVEKELASGDLVRLYLTGSESRKIPINLVVPSRDDQGPAGEALELLILAQHGISCQRQ
>Mature_301_residues
MFRAKSTLEQWRILQAVVDHGGYAQAATALNKSQSSLNHAVAKLQHQLGVELLEVRGRKAYLTPRGEVLLRRSRYITQSV
MELEQLAGNLERGWEPSLTIAREIIYPMDKLITAINAFLPNGRGTRVSVIDSVLNGTHELVEENKVDIALCGGNPPKGHL
AQPLCVVELILVCHPSNPLAAELKIQDDKFLAQHLQIVIRDTAAKTNKDIGWLKAEQRWTVSNFHEAKAILCSGSGFCWL
PKELVEKELASGDLVRLYLTGSESRKIPINLVVPSRDDQGPAGEALELLILAQHGISCQRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=255, Percent_Identity=30.5882352941176, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789492, Length=287, Percent_Identity=28.2229965156794, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786448, Length=282, Percent_Identity=28.3687943262411, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786401, Length=264, Percent_Identity=28.4090909090909, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790262, Length=190, Percent_Identity=26.8421052631579, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33296; Mature: 33296

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRAKSTLEQWRILQAVVDHGGYAQAATALNKSQSSLNHAVAKLQHQLGVELLEVRGRKA
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEE
YLTPRGEVLLRRSRYITQSVMELEQLAGNLERGWEPSLTIAREIIYPMDKLITAINAFLP
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
NGRGTRVSVIDSVLNGTHELVEENKVDIALCGGNPPKGHLAQPLCVVELILVCHPSNPLA
CCCCCCHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCE
AELKIQDDKFLAQHLQIVIRDTAAKTNKDIGWLKAEQRWTVSNFHEAKAILCSGSGFCWL
EEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHCEEEEECCCCCEEC
PKELVEKELASGDLVRLYLTGSESRKIPINLVVPSRDDQGPAGEALELLILAQHGISCQR
CHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
Q
C
>Mature Secondary Structure
MFRAKSTLEQWRILQAVVDHGGYAQAATALNKSQSSLNHAVAKLQHQLGVELLEVRGRKA
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEE
YLTPRGEVLLRRSRYITQSVMELEQLAGNLERGWEPSLTIAREIIYPMDKLITAINAFLP
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
NGRGTRVSVIDSVLNGTHELVEENKVDIALCGGNPPKGHLAQPLCVVELILVCHPSNPLA
CCCCCCHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCE
AELKIQDDKFLAQHLQIVIRDTAAKTNKDIGWLKAEQRWTVSNFHEAKAILCSGSGFCWL
EEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHCEEEEECCCCCEEC
PKELVEKELASGDLVRLYLTGSESRKIPINLVVPSRDDQGPAGEALELLILAQHGISCQR
CHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]