| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is btuB [H]
Identifier: 119774973
GI number: 119774973
Start: 2237370
End: 2239889
Strand: Reverse
Name: btuB [H]
Synonym: Sama_1838
Alternate gene names: 119774973
Gene position: 2239889-2237370 (Counterclockwise)
Preceding gene: 119774974
Following gene: 119774963
Centisome position: 52.02
GC content: 53.33
Gene sequence:
>2520_bases ATGTTAAAAACCACGAGAATCGCCTGGGCGGTCAATTGTGTTCTGTTGGCTACCAGTGCTTCTGCTGTCGTGTCCAGTCA GGCGTTTGCCGAAGAAGCTCAAGCCAAAGACGTAGAGCGTATCGCAGTAACAGGTTCACGTATCCAGCGCCAGGATATGG AAACTGCTTCTCCTGTCACAGTGATCAGTGCCGATGCCATTCGCGCTGAAGGCTTCACCTCTGTTGACCAAATGCTGCAG GCTCAAACCTCCATGGCGGGTGCCGCTGTGGGTTCAAGCACCAACAACGGTGCAGATGGTGTAGCGCAGGTTGACCTGCG TGGTATGGGCGCTGAGCGTACTCTGGTACTGCTGAACGGTCGCCGCATGGTGAACTCAGGTTCAGGCGCTGACAGCGCTG TGGATTTGAACTCTATCCCGGTTGCCATGATTGCCCGTGTAGAAATCCTGAAAGACGGTGCATCTGCAGTGTATGGCTCT GACGCCATCGCCGGTGTGGTGAACATCATCACCAAGAAAGATTTTGAAGGCTTCCAGTTCGACTTTAACGGCAGCGGCAC CGACAAGGGTGACGGCGAAAGTGGCGAACTGAGCATGCTCTACGGTTTCAACACCGATAACGGTGGCAACTACACCTTTG GTGCGGCTTACTCTGAGCGCCGTGGTGTTATCCAGGCCGATCGTGACTGGACCGAGGCAGGTTACAGCTCATTCATTCCT ACCGGCTCTCTGGAAGGTATGGTGAAAGACGCCAACGGTAATTGGGTTGACCGTAACACAGGTTATGACTTCACCCAGGA CAGCTGGTATCAGACCCCAGCCAAGCGTTACAGCCTGTTTGCCAACATGACTCAGGAACTGGGTGACGATCTGCTGCTGA CCGGTGACATCCTGTATACCAAGCGTAAATCTGATCAGCAAATGGCCGCTCAGCCAGCCGACATCATGCTGGGCGTATGT GGTGAAGAGGGTATCGATGCTGCACGTTGCATCACTCTGGATGGCGACATGATTGCTGCCGGTATCGCTCCTGATGACAC TGGCCGTGTAAACTACCGTCGCCGTACCACCGATGTGGGTCCACGTATCTACAATCAGGACACCGACACTCTGCGCGCCT CTCTGGGCCTGCAAGGTTCTCTGGACATCAACACAGGCATGACCTGGGACCTGTCTTACACCTATGGTAAGAACAAGGCC GAGACCTGGGTTGAAAACTCTATCAATGCCGTGAAGATGGAAAACTCCGTCTATAACAACCTGGACTCATGGCTCAGCGG TCAGCCTCTGACTCAGGACATCATCAACGACATCGGTTTCACCGAGCGTAACGATGGCGGTAACGAGCAGCACGTGGTTG CCGGCGTACTGAGCGGTGAACTGTTTGATTTGAGTGCAGGTGCAGTTGGTTTTGCAATCGGTGCTGAATACCGTTACGAC AGTGGCTACTACAATCCTGATCCTGTGATTGTGGCCGGTGAGGGTACTGCGGCTCAGCAAGACCCAACTGATGGTAACTA CGATGTATTCTCCATCTATCAGGAAGTCAGCGTGCCTTTCACCGAGAAACTGACCGGTGAATTCGCCCTGCGTTTCGATG ACTACTCTACCTTCGGTAAAGCCTCGACCTGGAAAGTGGGTCTGACCTATGAAGCCACTGACGATCTGATGCTGCGTACC GTAGCTGCTACCGGTTTCCGTGCACCTAACGTTGCCGAGCTGTTTGGTGGTAACACAGGTTCTTACGATTATCTGGACGA TCCATGGGGTAACGAGCAAGATCCTCAAATTCTGGTGAACTACACCTCAGATCCTGATCTGAAGCCAGAAGAGTCTGAGT CTTACACTGCCGGTCTGGTGTACTCTCCAAGCTACATCGACGGTCTGTCTCTGACCCTCGATTACTGGCGTTTCCGTGTG ACCAACGCCATTACCCGTCTGGATGCCCAGAAGGGTCTGGTTGACTGTCATGCCGGTATTCTGAGCGCCTGTGAAACCTT CAAGATCACCGATGAAGGCGATCTGTCGAACTTCACCAACCCGCTGACCAACGTGGGTAGCCAGAACACCAGTGGTATCG ACTTCAACCTGGCCTACAACTTCGAAGCTCTGAATCTGGACTGGAAGATCAATAACGATCTGACCTACCTGCTGGAATTC GAACAGGACAACGTAGCCTACGAAGGCACCAGCGATGGTAACTTCGGTGGTTATGCCAAGGTGCGCAACAACTTCAGCAT CCAGGCCGGTCAGGCCGACTGGAGCCTGATGTACTACAACCGTTTCATCGGCGAAACCGAGTGGTTGGGTGACCGTGATG AAACTGTAGACTCAGTGCTGTACCACAACGTGGTTGCCACTTACTTCATCAACGACGGCGTGACCGTATCTCTGGGTGTG AAGAACCTCACTGATGAAGAGCCATCCTACGTGCCTAACGGCAGCGACGGCGGTACCATTCCTGAAGTATTTGACACCAT CGGTCGTCAAATCTACGGTGGTCTGACGATGAAGTTCTGA
Upstream 100 bases:
>100_bases AGTTTGAGGGTTTGACGATTCTCTGCTGCTTGGCGAGTATCGGGTCTGCGCCAAATTCAAAATCTTACAGGCGCAGTCAA AATAAGCAGGGAGTTAAATC
Downstream 100 bases:
>100_bases TAACTATCAGACACTTTAACGCAGAAACAAAAAAGCGCCCCATGGGCGCTTTTTTATTACGGGAGTCAAAGCCTCACTCA GTCAGCGTCGCTCCGGTAAA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 839; Mature: 839
Protein sequence:
>839_residues MLKTTRIAWAVNCVLLATSASAVVSSQAFAEEAQAKDVERIAVTGSRIQRQDMETASPVTVISADAIRAEGFTSVDQMLQ AQTSMAGAAVGSSTNNGADGVAQVDLRGMGAERTLVLLNGRRMVNSGSGADSAVDLNSIPVAMIARVEILKDGASAVYGS DAIAGVVNIITKKDFEGFQFDFNGSGTDKGDGESGELSMLYGFNTDNGGNYTFGAAYSERRGVIQADRDWTEAGYSSFIP TGSLEGMVKDANGNWVDRNTGYDFTQDSWYQTPAKRYSLFANMTQELGDDLLLTGDILYTKRKSDQQMAAQPADIMLGVC GEEGIDAARCITLDGDMIAAGIAPDDTGRVNYRRRTTDVGPRIYNQDTDTLRASLGLQGSLDINTGMTWDLSYTYGKNKA ETWVENSINAVKMENSVYNNLDSWLSGQPLTQDIINDIGFTERNDGGNEQHVVAGVLSGELFDLSAGAVGFAIGAEYRYD SGYYNPDPVIVAGEGTAAQQDPTDGNYDVFSIYQEVSVPFTEKLTGEFALRFDDYSTFGKASTWKVGLTYEATDDLMLRT VAATGFRAPNVAELFGGNTGSYDYLDDPWGNEQDPQILVNYTSDPDLKPEESESYTAGLVYSPSYIDGLSLTLDYWRFRV TNAITRLDAQKGLVDCHAGILSACETFKITDEGDLSNFTNPLTNVGSQNTSGIDFNLAYNFEALNLDWKINNDLTYLLEF EQDNVAYEGTSDGNFGGYAKVRNNFSIQAGQADWSLMYYNRFIGETEWLGDRDETVDSVLYHNVVATYFINDGVTVSLGV KNLTDEEPSYVPNGSDGGTIPEVFDTIGRQIYGGLTMKF
Sequences:
>Translated_839_residues MLKTTRIAWAVNCVLLATSASAVVSSQAFAEEAQAKDVERIAVTGSRIQRQDMETASPVTVISADAIRAEGFTSVDQMLQ AQTSMAGAAVGSSTNNGADGVAQVDLRGMGAERTLVLLNGRRMVNSGSGADSAVDLNSIPVAMIARVEILKDGASAVYGS DAIAGVVNIITKKDFEGFQFDFNGSGTDKGDGESGELSMLYGFNTDNGGNYTFGAAYSERRGVIQADRDWTEAGYSSFIP TGSLEGMVKDANGNWVDRNTGYDFTQDSWYQTPAKRYSLFANMTQELGDDLLLTGDILYTKRKSDQQMAAQPADIMLGVC GEEGIDAARCITLDGDMIAAGIAPDDTGRVNYRRRTTDVGPRIYNQDTDTLRASLGLQGSLDINTGMTWDLSYTYGKNKA ETWVENSINAVKMENSVYNNLDSWLSGQPLTQDIINDIGFTERNDGGNEQHVVAGVLSGELFDLSAGAVGFAIGAEYRYD SGYYNPDPVIVAGEGTAAQQDPTDGNYDVFSIYQEVSVPFTEKLTGEFALRFDDYSTFGKASTWKVGLTYEATDDLMLRT VAATGFRAPNVAELFGGNTGSYDYLDDPWGNEQDPQILVNYTSDPDLKPEESESYTAGLVYSPSYIDGLSLTLDYWRFRV TNAITRLDAQKGLVDCHAGILSACETFKITDEGDLSNFTNPLTNVGSQNTSGIDFNLAYNFEALNLDWKINNDLTYLLEF EQDNVAYEGTSDGNFGGYAKVRNNFSIQAGQADWSLMYYNRFIGETEWLGDRDETVDSVLYHNVVATYFINDGVTVSLGV KNLTDEEPSYVPNGSDGGTIPEVFDTIGRQIYGGLTMKF >Mature_839_residues MLKTTRIAWAVNCVLLATSASAVVSSQAFAEEAQAKDVERIAVTGSRIQRQDMETASPVTVISADAIRAEGFTSVDQMLQ AQTSMAGAAVGSSTNNGADGVAQVDLRGMGAERTLVLLNGRRMVNSGSGADSAVDLNSIPVAMIARVEILKDGASAVYGS DAIAGVVNIITKKDFEGFQFDFNGSGTDKGDGESGELSMLYGFNTDNGGNYTFGAAYSERRGVIQADRDWTEAGYSSFIP TGSLEGMVKDANGNWVDRNTGYDFTQDSWYQTPAKRYSLFANMTQELGDDLLLTGDILYTKRKSDQQMAAQPADIMLGVC GEEGIDAARCITLDGDMIAAGIAPDDTGRVNYRRRTTDVGPRIYNQDTDTLRASLGLQGSLDINTGMTWDLSYTYGKNKA ETWVENSINAVKMENSVYNNLDSWLSGQPLTQDIINDIGFTERNDGGNEQHVVAGVLSGELFDLSAGAVGFAIGAEYRYD SGYYNPDPVIVAGEGTAAQQDPTDGNYDVFSIYQEVSVPFTEKLTGEFALRFDDYSTFGKASTWKVGLTYEATDDLMLRT VAATGFRAPNVAELFGGNTGSYDYLDDPWGNEQDPQILVNYTSDPDLKPEESESYTAGLVYSPSYIDGLSLTLDYWRFRV TNAITRLDAQKGLVDCHAGILSACETFKITDEGDLSNFTNPLTNVGSQNTSGIDFNLAYNFEALNLDWKINNDLTYLLEF EQDNVAYEGTSDGNFGGYAKVRNNFSIQAGQADWSLMYYNRFIGETEWLGDRDETVDSVLYHNVVATYFINDGVTVSLGV KNLTDEEPSYVPNGSDGGTIPEVFDTIGRQIYGGLTMKF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=164, Percent_Identity=32.9268292682927, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1788478, Length=150, Percent_Identity=32.6666666666667, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1786798, Length=127, Percent_Identity=37.007874015748, Blast_Score=71, Evalue=3e-13,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 91157; Mature: 91157
Theoretical pI: Translated: 3.99; Mature: 3.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKTTRIAWAVNCVLLATSASAVVSSQAFAEEAQAKDVERIAVTGSRIQRQDMETASPVT CCCCEEEHEEEEEEEEECCHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHCCCCCCEE VISADAIRAEGFTSVDQMLQAQTSMAGAAVGSSTNNGADGVAQVDLRGMGAERTLVLLNG EEECCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC RRMVNSGSGADSAVDLNSIPVAMIARVEILKDGASAVYGSDAIAGVVNIITKKDFEGFQF CEEECCCCCCCCEEECCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCCEEE DFNGSGTDKGDGESGELSMLYGFNTDNGGNYTFGAAYSERRGVIQADRDWTEAGYSSFIP EECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCHHHCCCCEEECCCHHHCCHHHCCC TGSLEGMVKDANGNWVDRNTGYDFTQDSWYQTPAKRYSLFANMTQELGDDLLLTGDILYT CCCCCCEEECCCCCEEECCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCEEEECCEEEE KRKSDQQMAAQPADIMLGVCGEEGIDAARCITLDGDMIAAGIAPDDTGRVNYRRRTTDVG CCCCCHHHHCCCCCEEEECCCCCCCCCEEEEEECCCEEEECCCCCCCCCEEEEEECCCCC PRIYNQDTDTLRASLGLQGSLDINTGMTWDLSYTYGKNKAETWVENSINAVKMENSVYNN CEEECCCHHHHHHHCCCCEEEEECCCEEEEEEEECCCCHHHHHHHCCCCEEEECCHHHHH LDSWLSGQPLTQDIINDIGFTERNDGGNEQHVVAGVLSGELFDLSAGAVGFAIGAEYRYD HHHHHCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEEEECCCCEEEEECCEEEEC SGYYNPDPVIVAGEGTAAQQDPTDGNYDVFSIYQEVSVPFTEKLTGEFALRFDDYSTFGK CCCCCCCCEEEECCCCCCCCCCCCCCCHHEEHHHHHCCCHHHHCCCEEEEEECCCCCCCC ASTWKVGLTYEATDDLMLRTVAATGFRAPNVAELFGGNTGSYDYLDDPWGNEQDPQILVN CCEEEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE YTSDPDLKPEESESYTAGLVYSPSYIDGLSLTLDYWRFRVTNAITRLDAQKGLVDCHAGI ECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHH LSACETFKITDEGDLSNFTNPLTNVGSQNTSGIDFNLAYNFEALNLDWKINNDLTYLLEF HHHHHEEEECCCCCCCHHCCHHHHCCCCCCCCEEEEEEEEEEEEEEEEEECCCEEEEEEE EQDNVAYEGTSDGNFGGYAKVRNNFSIQAGQADWSLMYYNRFIGETEWLGDRDETVDSVL CCCCEEEECCCCCCCCCEEEECCCEEEEECCCCEEEEEEHHHCCCCCCCCCCHHHHHHHH YHNVVATYFINDGVTVSLGVKNLTDEEPSYVPNGSDGGTIPEVFDTIGRQIYGGLTMKF HHHEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECC >Mature Secondary Structure MLKTTRIAWAVNCVLLATSASAVVSSQAFAEEAQAKDVERIAVTGSRIQRQDMETASPVT CCCCEEEHEEEEEEEEECCHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHCCCCCCEE VISADAIRAEGFTSVDQMLQAQTSMAGAAVGSSTNNGADGVAQVDLRGMGAERTLVLLNG EEECCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC RRMVNSGSGADSAVDLNSIPVAMIARVEILKDGASAVYGSDAIAGVVNIITKKDFEGFQF CEEECCCCCCCCEEECCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCCEEE DFNGSGTDKGDGESGELSMLYGFNTDNGGNYTFGAAYSERRGVIQADRDWTEAGYSSFIP EECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCHHHCCCCEEECCCHHHCCHHHCCC TGSLEGMVKDANGNWVDRNTGYDFTQDSWYQTPAKRYSLFANMTQELGDDLLLTGDILYT CCCCCCEEECCCCCEEECCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCEEEECCEEEE KRKSDQQMAAQPADIMLGVCGEEGIDAARCITLDGDMIAAGIAPDDTGRVNYRRRTTDVG CCCCCHHHHCCCCCEEEECCCCCCCCCEEEEEECCCEEEECCCCCCCCCEEEEEECCCCC PRIYNQDTDTLRASLGLQGSLDINTGMTWDLSYTYGKNKAETWVENSINAVKMENSVYNN CEEECCCHHHHHHHCCCCEEEEECCCEEEEEEEECCCCHHHHHHHCCCCEEEECCHHHHH LDSWLSGQPLTQDIINDIGFTERNDGGNEQHVVAGVLSGELFDLSAGAVGFAIGAEYRYD HHHHHCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEEEECCCCEEEEECCEEEEC SGYYNPDPVIVAGEGTAAQQDPTDGNYDVFSIYQEVSVPFTEKLTGEFALRFDDYSTFGK CCCCCCCCEEEECCCCCCCCCCCCCCCHHEEHHHHHCCCHHHHCCCEEEEEECCCCCCCC ASTWKVGLTYEATDDLMLRTVAATGFRAPNVAELFGGNTGSYDYLDDPWGNEQDPQILVN CCEEEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE YTSDPDLKPEESESYTAGLVYSPSYIDGLSLTLDYWRFRVTNAITRLDAQKGLVDCHAGI ECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHH LSACETFKITDEGDLSNFTNPLTNVGSQNTSGIDFNLAYNFEALNLDWKINNDLTYLLEF HHHHHEEEECCCCCCCHHCCHHHHCCCCCCCCEEEEEEEEEEEEEEEEEECCCEEEEEEE EQDNVAYEGTSDGNFGGYAKVRNNFSIQAGQADWSLMYYNRFIGETEWLGDRDETVDSVL CCCCEEEECCCCCCCCCEEEECCCEEEEECCCCEEEEEEHHHCCCCCCCCCCHHHHHHHH YHNVVATYFINDGVTVSLGVKNLTDEEPSYVPNGSDGGTIPEVFDTIGRQIYGGLTMKF HHHEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11598060 [H]