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The map label for this gene is rnfE

Identifier: 119774970

GI number: 119774970

Start: 2235167

End: 2235865

Strand: Direct

Name: rnfE

Synonym: Sama_1835

Alternate gene names: 119774970

Gene position: 2235167-2235865 (Clockwise)

Preceding gene: 119774969

Following gene: 119774971

Centisome position: 51.91

GC content: 56.37

Gene sequence:

>699_bases
ATGAGTAACTACAAAGAAATTGCCTGGCAAGGGCTGTGGAAAAATAACCCGGGGCTGGTGCAGCTTTTGGGGCTTTGTCC
ACTCCTTGCCGTCACAGCCACCCTGACCAATGCCCTTGGACTTGGTCTTGCCACTGTTGCCGTGTTGATTGGCTCCAACG
TGCTCGTCTCTCTGGTACGTGAATTTGTACCCAAGGAAATTCGCATTCCTGTGTTTGTGATGATCATCGCTGCGCTGGTT
ACAGTAGTTCAGCTTGTTATCAACGCCTATGCCTACGGCCTTTACCTGTCGCTGGGGATATTCCTGCCGCTGATTGTGAC
CAACTGCGTCATCATCGGCCGCGCCGAAGCCTTTGCATCCCGCAACAGCGTCGGCGCCGCCGCCTTCGATGGCCTGATGA
TGGGGACTGGATTTACCGCCGTGCTTGCTGTGCTCGGTGCAGTAAGGGAAATTCTCGGTCAGGGCACCTTGTTTGATGGC
GCCGACCAGCTGCTCGGCGACTGGGCCGCATCCCTTCGTATTGAGCTGTGGCATGTGGATAACAGCTTCCTGCTGGCCAT
GCTGCCCCCCGGCGCCTTTATCGCCATGGGACTCCTGATTGCCGGTAAAAACGTTATCGACAAGCGCCTGGAAGCGAAAA
AGCCAACACCTGAAGCCGCTCCCGCCATCACCCGAGCCAGGATCACCAAAGTAGGCTGA

Upstream 100 bases:

>100_bases
GCCTACCTCAAGGCAGTGAGCCGTACCCTGATCTTCGTCAGTGCCAATCAGGCCGAGTGGTTTAATCGGCCGCTGGGCTG
TGATAACGGAGCCAATGCAG

Downstream 100 bases:

>100_bases
ATACAGCAGACTGAGTAAGGTAAAAGATTCCGTGAATAACCAAAAGCGAGTGGAAATTTTAACCCGGCTTAGAGCCAATA
ACCCCAAGCCAGAGACTGAG

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSNYKEIAWQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGLATVAVLIGSNVLVSLVREFVPKEIRIPVFVMIIAALV
TVVQLVINAYAYGLYLSLGIFLPLIVTNCVIIGRAEAFASRNSVGAAAFDGLMMGTGFTAVLAVLGAVREILGQGTLFDG
ADQLLGDWAASLRIELWHVDNSFLLAMLPPGAFIAMGLLIAGKNVIDKRLEAKKPTPEAAPAITRARITKVG

Sequences:

>Translated_232_residues
MSNYKEIAWQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGLATVAVLIGSNVLVSLVREFVPKEIRIPVFVMIIAALV
TVVQLVINAYAYGLYLSLGIFLPLIVTNCVIIGRAEAFASRNSVGAAAFDGLMMGTGFTAVLAVLGAVREILGQGTLFDG
ADQLLGDWAASLRIELWHVDNSFLLAMLPPGAFIAMGLLIAGKNVIDKRLEAKKPTPEAAPAITRARITKVG
>Mature_231_residues
SNYKEIAWQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGLATVAVLIGSNVLVSLVREFVPKEIRIPVFVMIIAALVT
VVQLVINAYAYGLYLSLGIFLPLIVTNCVIIGRAEAFASRNSVGAAAFDGLMMGTGFTAVLAVLGAVREILGQGTLFDGA
DQLLGDWAASLRIELWHVDNSFLLAMLPPGAFIAMGLLIAGKNVIDKRLEAKKPTPEAAPAITRARITKVG

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787919, Length=211, Percent_Identity=62.5592417061611, Blast_Score=261, Evalue=4e-71,
Organism=Escherichia coli, GI1787914, Length=157, Percent_Identity=33.1210191082803, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFE_SHEAM (A1S6N4)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_927710.1
- STRING:   A1S6N4
- GeneID:   4604085
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_1835
- NMPDR:   fig|326297.7.peg.1727
- eggNOG:   COG4660
- HOGENOM:   HBG624915
- OMA:   VTNCVII
- PhylomeDB:   A1S6N4
- ProtClustDB:   PRK12405
- GO:   GO:0006810
- HAMAP:   MF_00478
- InterPro:   IPR003667
- InterPro:   IPR010968
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01948

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 24538; Mature: 24406

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x13559144)-; HASH(0x14055bb0)-; HASH(0x141209b4)-; HASH(0x14202e5c)-; HASH(0x12d3ab8c)-; HASH(0x141f4194)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNYKEIAWQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGLATVAVLIGSNVLVSLVR
CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
EFVPKEIRIPVFVMIIAALVTVVQLVINAYAYGLYLSLGIFLPLIVTNCVIIGRAEAFAS
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHC
RNSVGAAAFDGLMMGTGFTAVLAVLGAVREILGQGTLFDGADQLLGDWAASLRIELWHVD
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEEEC
NSFLLAMLPPGAFIAMGLLIAGKNVIDKRLEAKKPTPEAAPAITRARITKVG
CCEEEEEECCHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCH
>Mature Secondary Structure 
SNYKEIAWQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGLATVAVLIGSNVLVSLVR
CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
EFVPKEIRIPVFVMIIAALVTVVQLVINAYAYGLYLSLGIFLPLIVTNCVIIGRAEAFAS
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHC
RNSVGAAAFDGLMMGTGFTAVLAVLGAVREILGQGTLFDGADQLLGDWAASLRIELWHVD
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEEEC
NSFLLAMLPPGAFIAMGLLIAGKNVIDKRLEAKKPTPEAAPAITRARITKVG
CCEEEEEECCHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA