Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774937

Identifier: 119774937

GI number: 119774937

Start: 2193985

End: 2194581

Strand: Reverse

Name: 119774937

Synonym: Sama_1802

Alternate gene names: NA

Gene position: 2194581-2193985 (Counterclockwise)

Preceding gene: 119774938

Following gene: 119774925

Centisome position: 50.96

GC content: 50.42

Gene sequence:

>597_bases
ATGCTGTCGGCCCCGGCATTCGCCACGACCGTTTCGTTGGAGTACAGCGGATTTCATGACAGATTGAAGCTGGTTAAAAA
GGGCGATTTCCCAAGAACGGAACTTACCTTTTCGGTGCCCATGAAAGAAGGCTGCAAGATAGTGAAGGGCGAAATTACCA
CTGAGTCTAAACGCTTTCCGCTTACCATTACGGATGACCAGCGGTTGTTTGTGCCCTTTGACGATGATTTAAAGCTGGCA
AGGGCGCTGGTTAACATAGAAACAGATGGCGACGCGTCAACGTGTGGGTTAAGCCTGCAAGTAAGAGAGCGGGTTCCCCA
AAAGCAGTATTCCGGCGACATGCTTGCGGCACTTAAATCGGAAATGGACAGCTTGCAGGCCTCTTTGCAGGGCTTCCCAA
TGAAGTACTTTGCCCGCCCTTCAAACGGGATTCGATTTGAGTTTGCCCAAGAAGGTCGGTTAGCCACGGTGGATGGTAGC
GAAAAGCGACTGTCAAAAGCGTTTATCCTGACGAGTGAAGAGCTGGACGGTATTTCTCAACTTAGCTTCTCAGACGCACC
ACAGATAGTCAGCCCTTGGTACGCACAAACCAAATAG

Upstream 100 bases:

>100_bases
GCCTACGTCGATGAATTGCTGCAGATGCTGCGGCACAATAAAGTCTACCTGGAACCTCAAGATGAACCCGAGAATCAAAC
TCTGTCTGCTGTCCAGTCTG

Downstream 100 bases:

>100_bases
CACCAATAGAATTTGCTGATGATGTCCCATGAAAAAGCCCGCTTAACGCGGGCTTTTTTGCGTGTTTTAATGTCACATTC
CCCAGTTAGTTTGGAGGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MLSAPAFATTVSLEYSGFHDRLKLVKKGDFPRTELTFSVPMKEGCKIVKGEITTESKRFPLTITDDQRLFVPFDDDLKLA
RALVNIETDGDASTCGLSLQVRERVPQKQYSGDMLAALKSEMDSLQASLQGFPMKYFARPSNGIRFEFAQEGRLATVDGS
EKRLSKAFILTSEELDGISQLSFSDAPQIVSPWYAQTK

Sequences:

>Translated_198_residues
MLSAPAFATTVSLEYSGFHDRLKLVKKGDFPRTELTFSVPMKEGCKIVKGEITTESKRFPLTITDDQRLFVPFDDDLKLA
RALVNIETDGDASTCGLSLQVRERVPQKQYSGDMLAALKSEMDSLQASLQGFPMKYFARPSNGIRFEFAQEGRLATVDGS
EKRLSKAFILTSEELDGISQLSFSDAPQIVSPWYAQTK
>Mature_198_residues
MLSAPAFATTVSLEYSGFHDRLKLVKKGDFPRTELTFSVPMKEGCKIVKGEITTESKRFPLTITDDQRLFVPFDDDLKLA
RALVNIETDGDASTCGLSLQVRERVPQKQYSGDMLAALKSEMDSLQASLQGFPMKYFARPSNGIRFEFAQEGRLATVDGS
EKRLSKAFILTSEELDGISQLSFSDAPQIVSPWYAQTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22045; Mature: 22045

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSAPAFATTVSLEYSGFHDRLKLVKKGDFPRTELTFSVPMKEGCKIVKGEITTESKRFP
CCCCCCEEEEEEEEECCHHHHHHHHHCCCCCCCEEEEECCHHHCCEEEECEEECCCCCCC
LTITDDQRLFVPFDDDLKLARALVNIETDGDASTCGLSLQVRERVPQKQYSGDMLAALKS
EEEECCCEEEEECCCCHHHHHHHEEECCCCCCCCEEEEEEHHHCCCHHHCCCHHHHHHHH
EMDSLQASLQGFPMKYFARPSNGIRFEFAQEGRLATVDGSEKRLSKAFILTSEELDGISQ
HHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCEEEECCCHHHHHEEEEEECHHCCCHHH
LSFSDAPQIVSPWYAQTK
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLSAPAFATTVSLEYSGFHDRLKLVKKGDFPRTELTFSVPMKEGCKIVKGEITTESKRFP
CCCCCCEEEEEEEEECCHHHHHHHHHCCCCCCCEEEEECCHHHCCEEEECEEECCCCCCC
LTITDDQRLFVPFDDDLKLARALVNIETDGDASTCGLSLQVRERVPQKQYSGDMLAALKS
EEEECCCEEEEECCCCHHHHHHHEEECCCCCCCCEEEEEEHHHCCCHHHCCCHHHHHHHH
EMDSLQASLQGFPMKYFARPSNGIRFEFAQEGRLATVDGSEKRLSKAFILTSEELDGISQ
HHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCEEEECCCHHHHHEEEEEECHHCCCHHH
LSFSDAPQIVSPWYAQTK
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA