| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is opgH [H]
Identifier: 119774828
GI number: 119774828
Start: 2068718
End: 2070841
Strand: Direct
Name: opgH [H]
Synonym: Sama_1692
Alternate gene names: 119774828
Gene position: 2068718-2070841 (Clockwise)
Preceding gene: 119774827
Following gene: 119774830
Centisome position: 48.04
GC content: 56.31
Gene sequence:
>2124_bases ATGCCGCCGGAGCGTCCGGCGGATATGCCCACCCAGTCGCTTAAATCCCTGAGCGAAGGCTTTCCCCGCACACCCGTATC ACCTTCCGGTGTTAAGTCCAGCGCTCTGAAGCGCTGGTCTGTGGTGGGCTCAGCACTCCTGTTGTCTGCATTTGCTATTT ATGAAATGCGCGGGGTGTTTATGCTCGGAGGCCTGACGCCATTGGAATACCTGGTGTTGGTACTCTTTGCCATCAACTTC TGTTGGATTGCCCTGGCATTTTGCGCAGGGATTGCCGGGATGATTTCTATCATTCGTGGTAAAAAGTCCGCAGTCGAAGA GGTGGAGCTCAATACCCGCACCGCGATCCTGATGCCCACCTACAACGAATCCCCAGACCGGGTATTCGCCGCAGTGGAAA CCATGGCACTGGCACTTGCAGATACGCCGGATGGTCATGCCTTTGATTGGTTTATTCTCAGTGACACCACAGATCCTGAG GTGGCATTGGCCGAAGAGCACGCCTTTTGGCTGCTTCGTGAAGCCACCGCAGGTAAGGCGCGGGTGTATTATCGTCGTCG CCGTAAAAACGTTGCCCGCAAGGCCGGTAACGTGGCGGACTTCTGTCGGCGCTGGGGCAGCAGTTACGACCATTTGTTGG TGTTGGATGCCGACAGTGTGATGGAAACCTCCACCATAGTGTCGCTGGCAAGACGGATGCAGGCCGATCCGGATGCAGGT CTGATCCAGACCATTCCTGCACTTATCAAGGGCACAACCCTGATGGCGCGGGTACAGCAGTTTGCGGCCCGTTTTTATGG CCCAGTGATCGGCACTGGCTTGGCGTGGTGGGTACAAAAAGAAGGTAACTTCTGGGGGCACAACGCCATTATCCGCACCG AAGCCTTTATGAAGGCTGCCGGTTTGCCCCATTTGTCCGGTAAGCCTCCCTTCGGCGGCCATATACTGAGCCATGACTTT GTGGAAGCCGCGCTTATCCGCCGCGCCGGGTGGAGCGTGAAAATTGCTGCCGATCTCTATGGCTCCTACGAGGAGTGCCC GCCGTCGATTATTGACATGGCAGTGCGCGACCGTCGCTGGTGTCAGGGCAACCTGCAGCATACCCGTGTCCTGCCCGCAA AAGGCCTGCATTGGGTCAGCCGCATGCACCTGGTCACGGGGATCATGTCTTATCTGTCATCGCCATTCTGGCTGATGCTG ATCCTCTCGGGTTTGTTGCTGGCGCTGCAGGCGCACTACATACGCCCTGAGTACTTCTCGGATCAGTTCTCGCTGTATCC CACTTGGCCAGTGATGGACTCCGACAGGGCATTGCGCCTCTTCTACATCACTATGGGTGTACTCTTTGGTCCTAAAATCT TCGGGTTGTTGCTGTTGGTGTTTGACAACAAAACCTGTAAGGCATTGGGCGGCAGACTGCGCATCGCGCTGAGCACCATT ACCGAAGTCATACTCTCGGCCATGATTGCGCCCATTATGATGTTTATTCATTGTGGCGCCGTGCTCTCCATCCTCTTTGG CCGCGACAGTGGTTGGTCGCCCCAGCGCCGCGACGATGGCAGTCTTCCCTGGAAAGACCTGATCTATCGCCACCGCTGGC ACATGATTGCAGGATTGCTGCTGGGTTATGCCGCGGTACTCGACTCATTAACCTTGCTGGCGTGGATGTCACCGGCCCTG GTAGGACTCTGGCTTGCCGTCCCCTTATCTGCCGTCACGGCATCTGGCCCCATCGGGCAATGGTTCAAGGACAGAAAAAT TCTGGCCACCCCGGAAGAGGTGAATGAACCTGCCATAGTGGCAGCAGCAACAGCGCGGCGTGAATACTATGCCGAAGCCC TGGGTGAAAGCTGGAATGTGCCTATGCTGCTGGCGAATCCCGATATGATGGCGCTGCACATGAGCATTATGGATAAGTTG CCCACCCATGTGCCCGGTAGCCCCATTGAGCCCCTTGAGGCGATTGCACGGGTTAAGGTGCACGAAGCCCAGTGTCAAAC GAGTTTGCTGGCGCTCTTAAGCCGTCAGGAGCTTGGCTATGTGCTGGGTAATCCCTTGCTGATGAAACACATGCAGCACT TGCCAGAAGCTTATGCCGATGACGATCTCGTGACTATCTGCTGA
Upstream 100 bases:
>100_bases CGCAGCGTAGAAACCTGGCTGTACCGTTGGACGCTCTGAGACAGGTATGACACACAAGTTGCTTGAAACTCCGTCTCCGG CCCTGGCCGGAGACACTGCC
Downstream 100 bases:
>100_bases TCCAGAAATGGTCGAATGAAAAAGCCCGGCGGTTGCCGGGCTTTTTTGTGTTAAGGGGCGGTGTCACCCTTTATGCATCA GAGACTGTCCTGATAGGCAC
Product: glucosyltransferase MdoH
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 707; Mature: 706
Protein sequence:
>707_residues MPPERPADMPTQSLKSLSEGFPRTPVSPSGVKSSALKRWSVVGSALLLSAFAIYEMRGVFMLGGLTPLEYLVLVLFAINF CWIALAFCAGIAGMISIIRGKKSAVEEVELNTRTAILMPTYNESPDRVFAAVETMALALADTPDGHAFDWFILSDTTDPE VALAEEHAFWLLREATAGKARVYYRRRRKNVARKAGNVADFCRRWGSSYDHLLVLDADSVMETSTIVSLARRMQADPDAG LIQTIPALIKGTTLMARVQQFAARFYGPVIGTGLAWWVQKEGNFWGHNAIIRTEAFMKAAGLPHLSGKPPFGGHILSHDF VEAALIRRAGWSVKIAADLYGSYEECPPSIIDMAVRDRRWCQGNLQHTRVLPAKGLHWVSRMHLVTGIMSYLSSPFWLML ILSGLLLALQAHYIRPEYFSDQFSLYPTWPVMDSDRALRLFYITMGVLFGPKIFGLLLLVFDNKTCKALGGRLRIALSTI TEVILSAMIAPIMMFIHCGAVLSILFGRDSGWSPQRRDDGSLPWKDLIYRHRWHMIAGLLLGYAAVLDSLTLLAWMSPAL VGLWLAVPLSAVTASGPIGQWFKDRKILATPEEVNEPAIVAAATARREYYAEALGESWNVPMLLANPDMMALHMSIMDKL PTHVPGSPIEPLEAIARVKVHEAQCQTSLLALLSRQELGYVLGNPLLMKHMQHLPEAYADDDLVTIC
Sequences:
>Translated_707_residues MPPERPADMPTQSLKSLSEGFPRTPVSPSGVKSSALKRWSVVGSALLLSAFAIYEMRGVFMLGGLTPLEYLVLVLFAINF CWIALAFCAGIAGMISIIRGKKSAVEEVELNTRTAILMPTYNESPDRVFAAVETMALALADTPDGHAFDWFILSDTTDPE VALAEEHAFWLLREATAGKARVYYRRRRKNVARKAGNVADFCRRWGSSYDHLLVLDADSVMETSTIVSLARRMQADPDAG LIQTIPALIKGTTLMARVQQFAARFYGPVIGTGLAWWVQKEGNFWGHNAIIRTEAFMKAAGLPHLSGKPPFGGHILSHDF VEAALIRRAGWSVKIAADLYGSYEECPPSIIDMAVRDRRWCQGNLQHTRVLPAKGLHWVSRMHLVTGIMSYLSSPFWLML ILSGLLLALQAHYIRPEYFSDQFSLYPTWPVMDSDRALRLFYITMGVLFGPKIFGLLLLVFDNKTCKALGGRLRIALSTI TEVILSAMIAPIMMFIHCGAVLSILFGRDSGWSPQRRDDGSLPWKDLIYRHRWHMIAGLLLGYAAVLDSLTLLAWMSPAL VGLWLAVPLSAVTASGPIGQWFKDRKILATPEEVNEPAIVAAATARREYYAEALGESWNVPMLLANPDMMALHMSIMDKL PTHVPGSPIEPLEAIARVKVHEAQCQTSLLALLSRQELGYVLGNPLLMKHMQHLPEAYADDDLVTIC >Mature_706_residues PPERPADMPTQSLKSLSEGFPRTPVSPSGVKSSALKRWSVVGSALLLSAFAIYEMRGVFMLGGLTPLEYLVLVLFAINFC WIALAFCAGIAGMISIIRGKKSAVEEVELNTRTAILMPTYNESPDRVFAAVETMALALADTPDGHAFDWFILSDTTDPEV ALAEEHAFWLLREATAGKARVYYRRRRKNVARKAGNVADFCRRWGSSYDHLLVLDADSVMETSTIVSLARRMQADPDAGL IQTIPALIKGTTLMARVQQFAARFYGPVIGTGLAWWVQKEGNFWGHNAIIRTEAFMKAAGLPHLSGKPPFGGHILSHDFV EAALIRRAGWSVKIAADLYGSYEECPPSIIDMAVRDRRWCQGNLQHTRVLPAKGLHWVSRMHLVTGIMSYLSSPFWLMLI LSGLLLALQAHYIRPEYFSDQFSLYPTWPVMDSDRALRLFYITMGVLFGPKIFGLLLLVFDNKTCKALGGRLRIALSTIT EVILSAMIAPIMMFIHCGAVLSILFGRDSGWSPQRRDDGSLPWKDLIYRHRWHMIAGLLLGYAAVLDSLTLLAWMSPALV GLWLAVPLSAVTASGPIGQWFKDRKILATPEEVNEPAIVAAATARREYYAEALGESWNVPMLLANPDMMALHMSIMDKLP THVPGSPIEPLEAIARVKVHEAQCQTSLLALLSRQELGYVLGNPLLMKHMQHLPEAYADDDLVTIC
Specific function: Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs) [H]
COG id: COG2943
COG function: function code M; Membrane glycosyltransferase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family. OpgH subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787287, Length=541, Percent_Identity=40.6654343807763, Blast_Score=401, Evalue=1e-113,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.4.1.- [C]
Molecular weight: Translated: 78391; Mature: 78259
Theoretical pI: Translated: 8.01; Mature: 8.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPERPADMPTQSLKSLSEGFPRTPVSPSGVKSSALKRWSVVGSALLLSAFAIYEMRGVF CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLGGLTPLEYLVLVLFAINFCWIALAFCAGIAGMISIIRGKKSAVEEVELNTRTAILMPT EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEC YNESPDRVFAAVETMALALADTPDGHAFDWFILSDTTDPEVALAEEHAFWLLREATAGKA CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEHHHHHHEEECCCCCHH RVYYRRRRKNVARKAGNVADFCRRWGSSYDHLLVLDADSVMETSTIVSLARRMQADPDAG HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCC LIQTIPALIKGTTLMARVQQFAARFYGPVIGTGLAWWVQKEGNFWGHNAIIRTEAFMKAA HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCCCEEEEHHHHHHHC GLPHLSGKPPFGGHILSHDFVEAALIRRAGWSVKIAADLYGSYEECPPSIIDMAVRDRRW CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHCCCHHHCCHHHHHHHHHHHHH CQGNLQHTRVLPAKGLHWVSRMHLVTGIMSYLSSPFWLMLILSGLLLALQAHYIRPEYFS HCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC DQFSLYPTWPVMDSDRALRLFYITMGVLFGPKIFGLLLLVFDNKTCKALGGRLRIALSTI CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHH TEVILSAMIAPIMMFIHCGAVLSILFGRDSGWSPQRRDDGSLPWKDLIYRHRWHMIAGLL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH LGYAAVLDSLTLLAWMSPALVGLWLAVPLSAVTASGPIGQWFKDRKILATPEEVNEPAIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEECHHHCCCCEEE AAATARREYYAEALGESWNVPMLLANPDMMALHMSIMDKLPTHVPGSPIEPLEAIARVKV EHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH HEAQCQTSLLALLSRQELGYVLGNPLLMKHMQHLPEAYADDDLVTIC HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEC >Mature Secondary Structure PPERPADMPTQSLKSLSEGFPRTPVSPSGVKSSALKRWSVVGSALLLSAFAIYEMRGVF CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLGGLTPLEYLVLVLFAINFCWIALAFCAGIAGMISIIRGKKSAVEEVELNTRTAILMPT EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEC YNESPDRVFAAVETMALALADTPDGHAFDWFILSDTTDPEVALAEEHAFWLLREATAGKA CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEHHHHHHEEECCCCCHH RVYYRRRRKNVARKAGNVADFCRRWGSSYDHLLVLDADSVMETSTIVSLARRMQADPDAG HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCC LIQTIPALIKGTTLMARVQQFAARFYGPVIGTGLAWWVQKEGNFWGHNAIIRTEAFMKAA HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCCCEEEEHHHHHHHC GLPHLSGKPPFGGHILSHDFVEAALIRRAGWSVKIAADLYGSYEECPPSIIDMAVRDRRW CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHCCCHHHCCHHHHHHHHHHHHH CQGNLQHTRVLPAKGLHWVSRMHLVTGIMSYLSSPFWLMLILSGLLLALQAHYIRPEYFS HCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC DQFSLYPTWPVMDSDRALRLFYITMGVLFGPKIFGLLLLVFDNKTCKALGGRLRIALSTI CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHH TEVILSAMIAPIMMFIHCGAVLSILFGRDSGWSPQRRDDGSLPWKDLIYRHRWHMIAGLL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH LGYAAVLDSLTLLAWMSPALVGLWLAVPLSAVTASGPIGQWFKDRKILATPEEVNEPAIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEECHHHCCCCEEE AAATARREYYAEALGESWNVPMLLANPDMMALHMSIMDKLPTHVPGSPIEPLEAIARVKV EHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH HEAQCQTSLLALLSRQELGYVLGNPLLMKHMQHLPEAYADDDLVTIC HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA