| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774771
Identifier: 119774771
GI number: 119774771
Start: 2001144
End: 2001548
Strand: Direct
Name: 119774771
Synonym: Sama_1634
Alternate gene names: NA
Gene position: 2001144-2001548 (Clockwise)
Preceding gene: 119774769
Following gene: 119774772
Centisome position: 46.47
GC content: 39.75
Gene sequence:
>405_bases TTGAACATCGCGATACTTAGGGTCTGTGGAAAATGTGAAGACTTGGAAAGGTTAAGGAAAAACTACAAGTTTGAAGTGTA TAGCCAGTGGAAAAAGGGTGACCCAATATCTAAGACTAAAACCTTCGCTGAATCGGGTTTTAAGGTGTCGATTCCTGATG GTAGCTCGCCAGGTGACATGATAGAAATTTTGTCATCTCAACTATTGGATTTATCCGCTCAGAGAATTGATTTTAGAGAT TATGACGTGACTGCTGAGATAGATATTGGGTTTGGTATTGGCGAAGAAAAGCAGTTTGTTGCTACATATGATTTGTCATT GGTGTTCCTTGAGTTGGCGGTTAAATGTGGAGTTTCGATTAGTCTATCTGGTTATCCCGTCGATGAAGAAGATGAAACCA ACTAA
Upstream 100 bases:
>100_bases TGCATTTTTAGCGAGAGCCGAAGCGTTCTGCGCGCCACGCGGGGAGATTATGCGCAAGCGCACTATACAAATGTTAGTTG GGCAAGTGGAGTTCTAGTCA
Downstream 100 bases:
>100_bases CAAGGCCAGCCAGCATCGCTCCCGTTGGTCGCTGGACCTCGTTACACTCGGCCGCTGCTGGCGGCGTTATGCTCTACGAG GAGTGATCCCTGAAAAACTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MNIAILRVCGKCEDLERLRKNYKFEVYSQWKKGDPISKTKTFAESGFKVSIPDGSSPGDMIEILSSQLLDLSAQRIDFRD YDVTAEIDIGFGIGEEKQFVATYDLSLVFLELAVKCGVSISLSGYPVDEEDETN
Sequences:
>Translated_134_residues MNIAILRVCGKCEDLERLRKNYKFEVYSQWKKGDPISKTKTFAESGFKVSIPDGSSPGDMIEILSSQLLDLSAQRIDFRD YDVTAEIDIGFGIGEEKQFVATYDLSLVFLELAVKCGVSISLSGYPVDEEDETN >Mature_134_residues MNIAILRVCGKCEDLERLRKNYKFEVYSQWKKGDPISKTKTFAESGFKVSIPDGSSPGDMIEILSSQLLDLSAQRIDFRD YDVTAEIDIGFGIGEEKQFVATYDLSLVFLELAVKCGVSISLSGYPVDEEDETN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14988; Mature: 14988
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIAILRVCGKCEDLERLRKNYKFEVYSQWKKGDPISKTKTFAESGFKVSIPDGSSPGDM CCEEEEEECCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCEEECCCCCCCHHH IEILSSQLLDLSAQRIDFRDYDVTAEIDIGFGIGEEKQFVATYDLSLVFLELAVKCGVSI HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHCCCEE SLSGYPVDEEDETN EECCCCCCCCCCCC >Mature Secondary Structure MNIAILRVCGKCEDLERLRKNYKFEVYSQWKKGDPISKTKTFAESGFKVSIPDGSSPGDM CCEEEEEECCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCEEECCCCCCCHHH IEILSSQLLDLSAQRIDFRDYDVTAEIDIGFGIGEEKQFVATYDLSLVFLELAVKCGVSI HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHCCCEE SLSGYPVDEEDETN EECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA