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The map label for this gene is ycbB [H]

Identifier: 119774749

GI number: 119774749

Start: 1970262

End: 1971680

Strand: Direct

Name: ycbB [H]

Synonym: Sama_1612

Alternate gene names: 119774749

Gene position: 1970262-1971680 (Clockwise)

Preceding gene: 119774747

Following gene: 119774750

Centisome position: 45.75

GC content: 52.15

Gene sequence:

>1419_bases
ATGGCAAGAGTCTATTGGATCTTTTTACTGTCCCTGGTCACCTCGGCCGCACTGGGCACGCAGGGCAGTTACAGTCGTCA
ATTGATGCGTGACCAGGCCAGCTTGCTTATTTTGGCTGAGCCCTCACTCGAGATTGAACTAAGCCCTTTGCTACGGAATT
TCGACACGGACAGCAAGTCTCTTGAGCGGGACTATCTTAAGCTGAAAAATGCCTGGCACCAGCTGGGTGTGCATTCAAGC
CCGGGGGATATGGACCAGAGCGGCAAGATGGGTGCCAACCGGAGTGAAACCGTCGAATCGGCTCATCATCAAAATGCAAC
ACAGGATCTCAACTCAAGACTAATAGCCCTCGAGCCCAACGACCGATTCCTCAATACCATGAACCGCTTGCGGCACTTGC
TGTGGTTAGCCGAACAACCCTGGCAACCCATAGTGCTGAACGGTTTGCTCAGGCCAGGTGATTCGCATACTGAGGTGGTG
GCAATTGCAAAGCGGCTATGGTTGCTTGGGGATATGGAGACTGAACCTGGTTATGCTCTTTCCCGCTATGATGATGAAGT
GGCACAGGGGGTGAAGGCATTTCAGCATCGACACGGGCTAAAACAAGATGCGGTGATTGGTCCTAAAACCCTCTATTGGT
TGAACCTTGCACCCGATACGAGAGCGGCACGGTTAGCCAGAGACTATCTATTGCAGAGCCGCGAGCGGCAAACGCTACCG
TCAACCTATGTGCTGGTCAATATTCCCGCCTTTGATTTGGAGCTGGTCGATGACGGTGAGGCACTCATGCACTCACGGGT
AATCGTTGGTAAACCCAGCCGTAAAACGCCCTTTATTCAAAGTGAAATAAGCGCTGTGGTGGTGAATCCCTCCTGGCGCG
TGCCCCGGCGCTTGATGCGCCTTGATGTGCTGCCAAAGGTACGTAAAGATGGCAGCTATCTCTCTCGAAAGGGCTTTATT
GTCTGGAGCAGGGAAGGTGAGGAAGTGAAGGAAACGGACGACTTTTTCCAAAGTGCGGCAGCGGGAAAGTTCCCTTACTT
GCTGGAGCAACGTCCAGGTCCGGACAATGCGTTGGGACGGTTTAAACTGCACTTTGCCAACGAAGATAATGTCTATTTGC
ACGACACCCCGGATAAACATTTGTTTGATGAACCGATGCGGGCATTGTCGTCGGGTTGTGTCAGGGTTGAGAAAATAAAC
GAATTGTCGGCATGGCTTGCCAATGGCCGCCTTGCTGATCCGCGTCGCTGGCAACAAACCTTGCAAACGCCACAAACCAC
CCGCTGGTTTACCCTCAAAGAACGGCTACCTGTCCATTTTGTCTACTGGACCAGTTGGGTCGACGCCGAAGGTAAGGCGC
AATTCAGGGAAGACATCTACGGAATTGCGCAAAATAATCAAATTCTTGCCGCCAAATAG

Upstream 100 bases:

>100_bases
GCTTTCTGTGCGAGAAGTCAGTCAGCAGTGGTATGACAGGCGCAGATCCAGCTGCCATGATTAAGACAAGGCATGGATGA
ATGCGCCTGCGGGAGTCATC

Downstream 100 bases:

>100_bases
CCGCAACGCCCCAATAAATAGCTGCAGTTTTCAAATGGGACGGATTTTGATCTCGGTCATACTTTATGCGTTAGAAAGCT
TGATCATATAAGCCTTTCGT

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MARVYWIFLLSLVTSAALGTQGSYSRQLMRDQASLLILAEPSLEIELSPLLRNFDTDSKSLERDYLKLKNAWHQLGVHSS
PGDMDQSGKMGANRSETVESAHHQNATQDLNSRLIALEPNDRFLNTMNRLRHLLWLAEQPWQPIVLNGLLRPGDSHTEVV
AIAKRLWLLGDMETEPGYALSRYDDEVAQGVKAFQHRHGLKQDAVIGPKTLYWLNLAPDTRAARLARDYLLQSRERQTLP
STYVLVNIPAFDLELVDDGEALMHSRVIVGKPSRKTPFIQSEISAVVVNPSWRVPRRLMRLDVLPKVRKDGSYLSRKGFI
VWSREGEEVKETDDFFQSAAAGKFPYLLEQRPGPDNALGRFKLHFANEDNVYLHDTPDKHLFDEPMRALSSGCVRVEKIN
ELSAWLANGRLADPRRWQQTLQTPQTTRWFTLKERLPVHFVYWTSWVDAEGKAQFREDIYGIAQNNQILAAK

Sequences:

>Translated_472_residues
MARVYWIFLLSLVTSAALGTQGSYSRQLMRDQASLLILAEPSLEIELSPLLRNFDTDSKSLERDYLKLKNAWHQLGVHSS
PGDMDQSGKMGANRSETVESAHHQNATQDLNSRLIALEPNDRFLNTMNRLRHLLWLAEQPWQPIVLNGLLRPGDSHTEVV
AIAKRLWLLGDMETEPGYALSRYDDEVAQGVKAFQHRHGLKQDAVIGPKTLYWLNLAPDTRAARLARDYLLQSRERQTLP
STYVLVNIPAFDLELVDDGEALMHSRVIVGKPSRKTPFIQSEISAVVVNPSWRVPRRLMRLDVLPKVRKDGSYLSRKGFI
VWSREGEEVKETDDFFQSAAAGKFPYLLEQRPGPDNALGRFKLHFANEDNVYLHDTPDKHLFDEPMRALSSGCVRVEKIN
ELSAWLANGRLADPRRWQQTLQTPQTTRWFTLKERLPVHFVYWTSWVDAEGKAQFREDIYGIAQNNQILAAK
>Mature_471_residues
ARVYWIFLLSLVTSAALGTQGSYSRQLMRDQASLLILAEPSLEIELSPLLRNFDTDSKSLERDYLKLKNAWHQLGVHSSP
GDMDQSGKMGANRSETVESAHHQNATQDLNSRLIALEPNDRFLNTMNRLRHLLWLAEQPWQPIVLNGLLRPGDSHTEVVA
IAKRLWLLGDMETEPGYALSRYDDEVAQGVKAFQHRHGLKQDAVIGPKTLYWLNLAPDTRAARLARDYLLQSRERQTLPS
TYVLVNIPAFDLELVDDGEALMHSRVIVGKPSRKTPFIQSEISAVVVNPSWRVPRRLMRLDVLPKVRKDGSYLSRKGFIV
WSREGEEVKETDDFFQSAAAGKFPYLLEQRPGPDNALGRFKLHFANEDNVYLHDTPDKHLFDEPMRALSSGCVRVEKINE
LSAWLANGRLADPRRWQQTLQTPQTTRWFTLKERLPVHFVYWTSWVDAEGKAQFREDIYGIAQNNQILAAK

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=282, Percent_Identity=42.1985815602837, Blast_Score=218, Evalue=6e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 53973; Mature: 53842

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVYWIFLLSLVTSAALGTQGSYSRQLMRDQASLLILAEPSLEIELSPLLRNFDTDSKS
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCEEEEHHHHHCCCCCHHH
LERDYLKLKNAWHQLGVHSSPGDMDQSGKMGANRSETVESAHHQNATQDLNSRLIALEPN
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCEEEECCC
DRFLNTMNRLRHLLWLAEQPWQPIVLNGLLRPGDSHTEVVAIAKRLWLLGDMETEPGYAL
HHHHHHHHHHHHHHHHHCCCCCCEEHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCH
SRYDDEVAQGVKAFQHRHGLKQDAVIGPKTLYWLNLAPDTRAARLARDYLLQSRERQTLP
HHCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
STYVLVNIPAFDLELVDDGEALMHSRVIVGKPSRKTPFIQSEISAVVVNPSWRVPRRLMR
CEEEEEECCCEEEEEECCCHHHHHCEEEEECCCCCCCCHHCCCCEEEECCCCHHHHHHHH
LDVLPKVRKDGSYLSRKGFIVWSREGEEVKETDDFFQSAAAGKFPYLLEQRPGPDNALGR
HHCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCE
FKLHFANEDNVYLHDTPDKHLFDEPMRALSSGCVRVEKINELSAWLANGRLADPRRWQQT
EEEEEECCCCEEEECCCCCHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCCCCCHHHHHHH
LQTPQTTRWFTLKERLPVHFVYWTSWVDAEGKAQFREDIYGIAQNNQILAAK
HCCCCCCEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure 
ARVYWIFLLSLVTSAALGTQGSYSRQLMRDQASLLILAEPSLEIELSPLLRNFDTDSKS
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCEEEEHHHHHCCCCCHHH
LERDYLKLKNAWHQLGVHSSPGDMDQSGKMGANRSETVESAHHQNATQDLNSRLIALEPN
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCEEEECCC
DRFLNTMNRLRHLLWLAEQPWQPIVLNGLLRPGDSHTEVVAIAKRLWLLGDMETEPGYAL
HHHHHHHHHHHHHHHHHCCCCCCEEHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCH
SRYDDEVAQGVKAFQHRHGLKQDAVIGPKTLYWLNLAPDTRAARLARDYLLQSRERQTLP
HHCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
STYVLVNIPAFDLELVDDGEALMHSRVIVGKPSRKTPFIQSEISAVVVNPSWRVPRRLMR
CEEEEEECCCEEEEEECCCHHHHHCEEEEECCCCCCCCHHCCCCEEEECCCCHHHHHHHH
LDVLPKVRKDGSYLSRKGFIVWSREGEEVKETDDFFQSAAAGKFPYLLEQRPGPDNALGR
HHCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCE
FKLHFANEDNVYLHDTPDKHLFDEPMRALSSGCVRVEKINELSAWLANGRLADPRRWQQT
EEEEEECCCCEEEECCCCCHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCCCCCHHHHHHH
LQTPQTTRWFTLKERLPVHFVYWTSWVDAEGKAQFREDIYGIAQNNQILAAK
HCCCCCCEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]