| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774740
Identifier: 119774740
GI number: 119774740
Start: 1959005
End: 1960882
Strand: Direct
Name: 119774740
Synonym: Sama_1603
Alternate gene names: NA
Gene position: 1959005-1960882 (Clockwise)
Preceding gene: 119774739
Following gene: 119774741
Centisome position: 45.49
GC content: 52.88
Gene sequence:
>1878_bases ATGAAGTTACAGTTGGAAAAGGCATTGTCCCTGGTGGCTGTTGGTGTGCTCGGGGTACTTGGAAGTGCTCAGGCCGCGCC GGTTTACGAAATTAAAAACCTCGAGAACTACGATCTTCGAGGCACCCTGGAAGGAACCCGCAACGGTTACGCCATGGGCG TTAACGAAAATGATGAATTAGTGGGGATCTCCAAGGGCCGCAAGAAGCTGTCCACTGACGACGTCGAAGGCGGCATCATC GACAGTGACGATGGGATTGCCGATGAAGAGCAGATCACCTATTCAGTGCTGCTGCCCATTGTGGCCAACAACTTTACCTT CAGTGCGGCGGCAAATGGTGCCACCGGTGCCTGGGTGCCTACCTTTGAAAGCATCAATGGCACCACAGACCCCAAAGATA CGGACACCAGTGTTCCTGAAACCATCAACTCCATTGATACCTTCTACTATGGTATTTCAGATGACGGTGTGAAAGTGGGG GCCACCACTGCACCTCAGAAGACCCTCGAATATACCGGCAGCATCGAAGATCAGGAGTTTTGGTACTTCCGTGACTTCGA GCTGCGTGGCGTTGCCAAAACGACCAGTGGTGATGTCGCTCTGCCACCGCCTTATGTGGAATACACCAGCACCAAAGAAG GCGAATCGGACAAAAAGGTTTACGTGGGTGGAACGTCCGCGGCCACTGCGATATCGGGAAATTTAGTTACCGGTTATGCC AGTACCGATATCAGTCGCTATGGCGGTGAGCGCGTACAGGCCTGTCTTGACAATGCCAGCACAGAAGGCGCATTGCCGGT TGATGTATGTGTTCAGATTGAGCAATACCCCAACTCCACCGGTACCCGTAACGTTCAGTATCAGACCCGCGCCTATGTGT GGCAGCTGGATAATGACACTGTGACAGGTACGGCCTTGCCATTGGGGCTTACTCCCGCTGCTGACTCAACCTTTACTTAC ACAGCGCAGGGCCTTGGCATCAACGCCGAGGGAACTGTGGTGGGGCGCTCCCATGTGAACCGTAACGGCGATGAAGATTA TTTCCGCATGGACGCCGCCTACTGGACTCGTAAACAGGATGGCAGTTATGACTATCACTGGGTACCAGTAATCAACGTAG ATGACGTGCACAGTTCACTGGCCTACGATATCAACGATAACGGTATTTTGGTGGGCTCTTATCGCAGTTACATTCAGGGT TATCTGCGTGACAAGTTCTTCTACCTGGATACCAAGGCGACCGATGCCAAGCCGGTTGTGCCGAACGATTTTTACAGCAC ATTGTCGGATCTCTCCAGCCGCGCCAAGAGCATTAACAACAAGGGCCAGGTGGTTGGTTACATAGAAACCACCCACGAGA AAGAAAAGCCACGTCCCAAGGCCGGTTTCCTGTTTGATATGAATGCCAAAGAGGGTGGGGAGTTCTCCAACCTCAACAAC CTGCTGACCTGTGAGTCCAAAGGCTTCGAACAGGGCTCGGATGGCAACTGGCAACGTCATCAGGTTGAAGTGGTGGATGG CAGCGGCAAAACCTTAACCTACAGCGCCGATATACAGGTTGTTGAAGCCAACAGCATCAATGAAGCCGGTGTGATTGTCG GCACTGCTTTTGTGCGCAAGCCGGTTTATAAGGTCGACGAAAACGGTCTGCCCGTTGTCGAAAATGGCAAGTTTGTATTT GAACTCGACGGTAACGGTAATCCTGTGACGTCTTACTTGCCGCGTGCCGTGGTGCTTGAGCCTGCAGGGACTGGTGCCAT AGCTTGTACTGAGGTAGACGAAAACACGGGTGGCGAGAAATATGAGCGCCAGGGCGCCGCCAGTTTGTTCGCTTTGCTGT TATTGCCTCTGGTTTGGCTCCGTCGCCGGGTACGCTAA
Upstream 100 bases:
>100_bases ATTGCTGGGCGAAAAAGAACAGCAATTGGACGTTTACTTCGAGCGTTGGGAAGAACTCGAGTCAATGAAGTAAACCAATG ATAATTATGGGAAGTTATTA
Downstream 100 bases:
>100_bases AACCCGTAAAAAAAATGAGGGGCCGGTAGGCCCCTTTTTTCTTCACTGTCTCAATAGCTTAATATTTACTCGGTAAAATC GAGTGTTTTTTTGATTGATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 625; Mature: 625
Protein sequence:
>625_residues MKLQLEKALSLVAVGVLGVLGSAQAAPVYEIKNLENYDLRGTLEGTRNGYAMGVNENDELVGISKGRKKLSTDDVEGGII DSDDGIADEEQITYSVLLPIVANNFTFSAAANGATGAWVPTFESINGTTDPKDTDTSVPETINSIDTFYYGISDDGVKVG ATTAPQKTLEYTGSIEDQEFWYFRDFELRGVAKTTSGDVALPPPYVEYTSTKEGESDKKVYVGGTSAATAISGNLVTGYA STDISRYGGERVQACLDNASTEGALPVDVCVQIEQYPNSTGTRNVQYQTRAYVWQLDNDTVTGTALPLGLTPAADSTFTY TAQGLGINAEGTVVGRSHVNRNGDEDYFRMDAAYWTRKQDGSYDYHWVPVINVDDVHSSLAYDINDNGILVGSYRSYIQG YLRDKFFYLDTKATDAKPVVPNDFYSTLSDLSSRAKSINNKGQVVGYIETTHEKEKPRPKAGFLFDMNAKEGGEFSNLNN LLTCESKGFEQGSDGNWQRHQVEVVDGSGKTLTYSADIQVVEANSINEAGVIVGTAFVRKPVYKVDENGLPVVENGKFVF ELDGNGNPVTSYLPRAVVLEPAGTGAIACTEVDENTGGEKYERQGAASLFALLLLPLVWLRRRVR
Sequences:
>Translated_625_residues MKLQLEKALSLVAVGVLGVLGSAQAAPVYEIKNLENYDLRGTLEGTRNGYAMGVNENDELVGISKGRKKLSTDDVEGGII DSDDGIADEEQITYSVLLPIVANNFTFSAAANGATGAWVPTFESINGTTDPKDTDTSVPETINSIDTFYYGISDDGVKVG ATTAPQKTLEYTGSIEDQEFWYFRDFELRGVAKTTSGDVALPPPYVEYTSTKEGESDKKVYVGGTSAATAISGNLVTGYA STDISRYGGERVQACLDNASTEGALPVDVCVQIEQYPNSTGTRNVQYQTRAYVWQLDNDTVTGTALPLGLTPAADSTFTY TAQGLGINAEGTVVGRSHVNRNGDEDYFRMDAAYWTRKQDGSYDYHWVPVINVDDVHSSLAYDINDNGILVGSYRSYIQG YLRDKFFYLDTKATDAKPVVPNDFYSTLSDLSSRAKSINNKGQVVGYIETTHEKEKPRPKAGFLFDMNAKEGGEFSNLNN LLTCESKGFEQGSDGNWQRHQVEVVDGSGKTLTYSADIQVVEANSINEAGVIVGTAFVRKPVYKVDENGLPVVENGKFVF ELDGNGNPVTSYLPRAVVLEPAGTGAIACTEVDENTGGEKYERQGAASLFALLLLPLVWLRRRVR >Mature_625_residues MKLQLEKALSLVAVGVLGVLGSAQAAPVYEIKNLENYDLRGTLEGTRNGYAMGVNENDELVGISKGRKKLSTDDVEGGII DSDDGIADEEQITYSVLLPIVANNFTFSAAANGATGAWVPTFESINGTTDPKDTDTSVPETINSIDTFYYGISDDGVKVG ATTAPQKTLEYTGSIEDQEFWYFRDFELRGVAKTTSGDVALPPPYVEYTSTKEGESDKKVYVGGTSAATAISGNLVTGYA STDISRYGGERVQACLDNASTEGALPVDVCVQIEQYPNSTGTRNVQYQTRAYVWQLDNDTVTGTALPLGLTPAADSTFTY TAQGLGINAEGTVVGRSHVNRNGDEDYFRMDAAYWTRKQDGSYDYHWVPVINVDDVHSSLAYDINDNGILVGSYRSYIQG YLRDKFFYLDTKATDAKPVVPNDFYSTLSDLSSRAKSINNKGQVVGYIETTHEKEKPRPKAGFLFDMNAKEGGEFSNLNN LLTCESKGFEQGSDGNWQRHQVEVVDGSGKTLTYSADIQVVEANSINEAGVIVGTAFVRKPVYKVDENGLPVVENGKFVF ELDGNGNPVTSYLPRAVVLEPAGTGAIACTEVDENTGGEKYERQGAASLFALLLLPLVWLRRRVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67850; Mature: 67850
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLQLEKALSLVAVGVLGVLGSAQAAPVYEIKNLENYDLRGTLEGTRNGYAMGVNENDEL CCEEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEECCCCCCEEEECCCCCCE VGISKGRKKLSTDDVEGGIIDSDDGIADEEQITYSVLLPIVANNFTFSAAANGATGAWVP EEECCCCCCCCCCCCCCCEEECCCCCCCCHHEEEEEEEEEHCCCEEEEECCCCCCCCCCC TFESINGTTDPKDTDTSVPETINSIDTFYYGISDDGVKVGATTAPQKTLEYTGSIEDQEF CHHCCCCCCCCCCCCCCCHHHHHCCEEEEEEECCCCEEECCCCCCCHHHHCCCCCCCCEE WYFRDFELRGVAKTTSGDVALPPPYVEYTSTKEGESDKKVYVGGTSAATAISGNLVTGYA EEEEEEEEEEEEECCCCCEECCCCCCEECCCCCCCCCCEEEEECCCCCEEECCCEEEEEE STDISRYGGERVQACLDNASTEGALPVDVCVQIEQYPNSTGTRNVQYQTRAYVWQLDNDT CCCHHHHCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEEEECCCE VTGTALPLGLTPAADSTFTYTAQGLGINAEGTVVGRSHVNRNGDEDYFRMDAAYWTRKQD EECEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEHHHCCCCCCCCCEEEEHHHEECCCC GSYDYHWVPVINVDDVHSSLAYDINDNGILVGSYRSYIQGYLRDKFFYLDTKATDAKPVV CCCCEEEEEEEEHHHCCCCEEEEECCCCEEEECHHHHHHHHHCCEEEEEECCCCCCCCCC PNDFYSTLSDLSSRAKSINNKGQVVGYIETTHEKEKPRPKAGFLFDMNAKEGGEFSNLNN CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCC LLTCESKGFEQGSDGNWQRHQVEVVDGSGKTLTYSADIQVVEANSINEAGVIVGTAFVRK EEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCEEEEECCCCCCCCEEEEEHHHHC PVYKVDENGLPVVENGKFVFELDGNGNPVTSYLPRAVVLEPAGTGAIACTEVDENTGGEK CCEEECCCCCCEEECCEEEEEECCCCCCHHHHCCCEEEEECCCCCEEEEEECCCCCCCHH YERQGAASLFALLLLPLVWLRRRVR HHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKLQLEKALSLVAVGVLGVLGSAQAAPVYEIKNLENYDLRGTLEGTRNGYAMGVNENDEL CCEEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEECCCCCCEEEECCCCCCE VGISKGRKKLSTDDVEGGIIDSDDGIADEEQITYSVLLPIVANNFTFSAAANGATGAWVP EEECCCCCCCCCCCCCCCEEECCCCCCCCHHEEEEEEEEEHCCCEEEEECCCCCCCCCCC TFESINGTTDPKDTDTSVPETINSIDTFYYGISDDGVKVGATTAPQKTLEYTGSIEDQEF CHHCCCCCCCCCCCCCCCHHHHHCCEEEEEEECCCCEEECCCCCCCHHHHCCCCCCCCEE WYFRDFELRGVAKTTSGDVALPPPYVEYTSTKEGESDKKVYVGGTSAATAISGNLVTGYA EEEEEEEEEEEEECCCCCEECCCCCCEECCCCCCCCCCEEEEECCCCCEEECCCEEEEEE STDISRYGGERVQACLDNASTEGALPVDVCVQIEQYPNSTGTRNVQYQTRAYVWQLDNDT CCCHHHHCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEEEECCCE VTGTALPLGLTPAADSTFTYTAQGLGINAEGTVVGRSHVNRNGDEDYFRMDAAYWTRKQD EECEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEHHHCCCCCCCCCEEEEHHHEECCCC GSYDYHWVPVINVDDVHSSLAYDINDNGILVGSYRSYIQGYLRDKFFYLDTKATDAKPVV CCCCEEEEEEEEHHHCCCCEEEEECCCCEEEECHHHHHHHHHCCEEEEEECCCCCCCCCC PNDFYSTLSDLSSRAKSINNKGQVVGYIETTHEKEKPRPKAGFLFDMNAKEGGEFSNLNN CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCC LLTCESKGFEQGSDGNWQRHQVEVVDGSGKTLTYSADIQVVEANSINEAGVIVGTAFVRK EEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCEEEEECCCCCCCCEEEEEHHHHC PVYKVDENGLPVVENGKFVFELDGNGNPVTSYLPRAVVLEPAGTGAIACTEVDENTGGEK CCEEECCCCCCEEECCEEEEEECCCCCCHHHHCCCEEEEECCCCCEEEEEECCCCCCCHH YERQGAASLFALLLLPLVWLRRRVR HHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA