| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774733
Identifier: 119774733
GI number: 119774733
Start: 1947839
End: 1948735
Strand: Direct
Name: 119774733
Synonym: Sama_1596
Alternate gene names: NA
Gene position: 1947839-1948735 (Clockwise)
Preceding gene: 119774732
Following gene: 119774734
Centisome position: 45.23
GC content: 54.4
Gene sequence:
>897_bases ATGCAGCTTAAACGAATGGGGTATGCCCAGACTAAAATTCGTCAGGGCCCGAACCACCGCGACGGTGAGCAAGTCACTTT CCTTGATGTTAAGCAGTTTTTCGGGCTGGGTCATGTCAGGGTCGGCAGTTGGGTTTCGTCTGAAGAGTCACTGATTGCCG CCAATATGGTGTTTGATGCCTTGGCCGATCTGGCGCTGGTGCTTGGCCTGCCGCCGAAAGTCATGGGACTCAGGGAGCGA CTGAATCTGGCGTTTGGTCATGGTGGTCAGCAGGGGGTAATGGCCCATTATTCGCCGTCGGAGCGCACTTTGGCACTGGC CAAGCACGCAGGTGCCGGGGCTGTTGCGCACGAATTCTGGCATGCCTTTGACCATCATTTATCAGACACGGCCATGGACA TTGGTCGCAGTCAAAAAGCACGTTTTGCCAGTGAACTTTGGCTTAATGACGTGCCCCTGCTTTGCCACCCGCTGAATGAC AGGCTGGAGGCCCTGTTCCAGTCTGTGCTCCTGAGTGGCGATGGAGAGCATCCGAGTGACTATGTACGCCGCGCCATTCA ATTGGATAAAACCTATGGCCGGCTTTATTTTTCCCATCCGTCTGAATTAATGGCGCGTGCCTTTGAGGCCGCCATCGAGT CTGAGGGCGACTTTGAGCAGGTAGATACCGACAGCGGTGAGATTCATCTTTTGCCCCTGATTAATCCTTATCTGGTCACT GGAACCCTTGAGGACATTAAAACCGAAAATAAGGGGGAATTGCTTCCCAAATTTGGCTCTTGGGGCGCTATGCCGCAGGG TGCTTTCCCCACGCCAATACACAGGCAAGCAATCATGAAGGCGATGGCGGGCTACTTCAGGCCCTTGGGCAGGGCACTTG CCAAAACCCTCAGCTGA
Upstream 100 bases:
>100_bases AGTGCTGGAGAAGTTGGTAACAGATGAAGGGTTTGATCTTGAACGCGAAATCAACCGCATGAAAGGCGAATAGTATTCAA CTCGGTATCCAGAACAGCTA
Downstream 100 bases:
>100_bases ACCGTGCTCAGTTGGGGGTTATATAAAGACCCAGAAAAGGACTTTGACAGCCATTATCAATGCCGTGTTAAAGTGAGCAG TGATAAGCCCCGCCGCAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MQLKRMGYAQTKIRQGPNHRDGEQVTFLDVKQFFGLGHVRVGSWVSSEESLIAANMVFDALADLALVLGLPPKVMGLRER LNLAFGHGGQQGVMAHYSPSERTLALAKHAGAGAVAHEFWHAFDHHLSDTAMDIGRSQKARFASELWLNDVPLLCHPLND RLEALFQSVLLSGDGEHPSDYVRRAIQLDKTYGRLYFSHPSELMARAFEAAIESEGDFEQVDTDSGEIHLLPLINPYLVT GTLEDIKTENKGELLPKFGSWGAMPQGAFPTPIHRQAIMKAMAGYFRPLGRALAKTLS
Sequences:
>Translated_298_residues MQLKRMGYAQTKIRQGPNHRDGEQVTFLDVKQFFGLGHVRVGSWVSSEESLIAANMVFDALADLALVLGLPPKVMGLRER LNLAFGHGGQQGVMAHYSPSERTLALAKHAGAGAVAHEFWHAFDHHLSDTAMDIGRSQKARFASELWLNDVPLLCHPLND RLEALFQSVLLSGDGEHPSDYVRRAIQLDKTYGRLYFSHPSELMARAFEAAIESEGDFEQVDTDSGEIHLLPLINPYLVT GTLEDIKTENKGELLPKFGSWGAMPQGAFPTPIHRQAIMKAMAGYFRPLGRALAKTLS >Mature_298_residues MQLKRMGYAQTKIRQGPNHRDGEQVTFLDVKQFFGLGHVRVGSWVSSEESLIAANMVFDALADLALVLGLPPKVMGLRER LNLAFGHGGQQGVMAHYSPSERTLALAKHAGAGAVAHEFWHAFDHHLSDTAMDIGRSQKARFASELWLNDVPLLCHPLND RLEALFQSVLLSGDGEHPSDYVRRAIQLDKTYGRLYFSHPSELMARAFEAAIESEGDFEQVDTDSGEIHLLPLINPYLVT GTLEDIKTENKGELLPKFGSWGAMPQGAFPTPIHRQAIMKAMAGYFRPLGRALAKTLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32957; Mature: 32957
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLKRMGYAQTKIRQGPNHRDGEQVTFLDVKQFFGLGHVRVGSWVSSEESLIAANMVFDA CCCCCCCCHHHHHHCCCCCCCCCEEEEEEHHHHHCCCCEEECCCCCCCCHHHHHHHHHHH LADLALVLGLPPKVMGLRERLNLAFGHGGQQGVMAHYSPSERTLALAKHAGAGAVAHEFW HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHH HAFDHHLSDTAMDIGRSQKARFASELWLNDVPLLCHPLNDRLEALFQSVLLSGDGEHPSD HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCCCCCHHH YVRRAIQLDKTYGRLYFSHPSELMARAFEAAIESEGDFEQVDTDSGEIHLLPLINPYLVT HHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEECCCCEEEE GTLEDIKTENKGELLPKFGSWGAMPQGAFPTPIHRQAIMKAMAGYFRPLGRALAKTLS CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQLKRMGYAQTKIRQGPNHRDGEQVTFLDVKQFFGLGHVRVGSWVSSEESLIAANMVFDA CCCCCCCCHHHHHHCCCCCCCCCEEEEEEHHHHHCCCCEEECCCCCCCCHHHHHHHHHHH LADLALVLGLPPKVMGLRERLNLAFGHGGQQGVMAHYSPSERTLALAKHAGAGAVAHEFW HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHH HAFDHHLSDTAMDIGRSQKARFASELWLNDVPLLCHPLNDRLEALFQSVLLSGDGEHPSD HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCCCCCHHH YVRRAIQLDKTYGRLYFSHPSELMARAFEAAIESEGDFEQVDTDSGEIHLLPLINPYLVT HHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEECCCCEEEE GTLEDIKTENKGELLPKFGSWGAMPQGAFPTPIHRQAIMKAMAGYFRPLGRALAKTLS CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA