| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774732
Identifier: 119774732
GI number: 119774732
Start: 1947572
End: 1947811
Strand: Direct
Name: 119774732
Synonym: Sama_1595
Alternate gene names: NA
Gene position: 1947572-1947811 (Clockwise)
Preceding gene: 119774731
Following gene: 119774733
Centisome position: 45.23
GC content: 46.67
Gene sequence:
>240_bases ATGTCTATTCCTATGCTGGCGTTATTTATCCCGATATTGGCCATTACCTGTGGTTTTGTTCTGCAATTTATGCGTTTGCG GGAAAGGCAGCAGCTCCTCGGCAGCGAACACAAGGCCGAACTTGCCATACTTCACGGTGAAATCAATCAGCTCAAAAGCC GGATTGAAGTGCTGGAGAAGTTGGTAACAGATGAAGGGTTTGATCTTGAACGCGAAATCAACCGCATGAAAGGCGAATAG
Upstream 100 bases:
>100_bases TTCATTTCAGATTATTCCCGATTTACATCACATAACCTTTGTTACTGGTATCCTTAGGTTGCTATCGCCATAATAGGGCA AATGCATCAAGGAGAATCCT
Downstream 100 bases:
>100_bases TATTCAACTCGGTATCCAGAACAGCTAATGCAGCTTAAACGAATGGGGTATGCCCAGACTAAAATTCGTCAGGGCCCGAA CCACCGCGACGGTGAGCAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 79; Mature: 78
Protein sequence:
>79_residues MSIPMLALFIPILAITCGFVLQFMRLRERQQLLGSEHKAELAILHGEINQLKSRIEVLEKLVTDEGFDLEREINRMKGE
Sequences:
>Translated_79_residues MSIPMLALFIPILAITCGFVLQFMRLRERQQLLGSEHKAELAILHGEINQLKSRIEVLEKLVTDEGFDLEREINRMKGE >Mature_78_residues SIPMLALFIPILAITCGFVLQFMRLRERQQLLGSEHKAELAILHGEINQLKSRIEVLEKLVTDEGFDLEREINRMKGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9122; Mature: 8991
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPMLALFIPILAITCGFVLQFMRLRERQQLLGSEHKAELAILHGEINQLKSRIEVLEK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LVTDEGFDLEREINRMKGE HHCCCCCCHHHHHHHHCCC >Mature Secondary Structure SIPMLALFIPILAITCGFVLQFMRLRERQQLLGSEHKAELAILHGEINQLKSRIEVLEK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LVTDEGFDLEREINRMKGE HHCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA