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The map label for this gene is rhaS [C]

Identifier: 119774688

GI number: 119774688

Start: 1887992

End: 1888819

Strand: Reverse

Name: rhaS [C]

Synonym: Sama_1551

Alternate gene names: 119774688

Gene position: 1888819-1887992 (Counterclockwise)

Preceding gene: 119774691

Following gene: 119774687

Centisome position: 43.86

GC content: 53.14

Gene sequence:

>828_bases
ATGCAACAGGAAATTATTGATTTCAGGCAAAGTCAGTCGCTGGCAGGTGCTGAGCTCAGTCGCGCCTCTTATCAACGCTT
TGACTTTGGTCGTCATGTCCATGAAGACCTGCACCTGGGCGCAGTTATCCGCGGGGCTCAGGCGTTCAATCACAAGGGTA
CCGGACACACCCTTTGCCGGGGGGATTTGTCGACCTTAAGCCCGGACGAATGCCACGATGGGATTGCGGCGACAGACACG
GGCTATGAAGTGCTGGTGTTGTCCCTGCCCCAATGGCATCTGGACCGGTTTGCCGCAGAGCTTGGCATAAGCTTTGGTGG
ATTTTGTCAGCCAAAGCGTAAAGATATGGCGCTTTATCAGGCCTTTGTGTCCCTGCATCGGCTGCTTTATCAAGCCGAAA
ATCCCCTGTTGGAAGAAACCGCATTGCTGGACTTCTTTCAACGCCTGCTGGGACAATGCTCCAAGTCTGAAAAAGTCACC
AACACAGGCACTGTCAAAGCCGGATTAAGCCGCGAAATTCGTCTTGCAAAATCACTGATGGCCGACACCCCAGAGCCGGT
GACACTTGAGCTTCTCGGGGATGCAACAGGGCTCGGTCGCTACCGGTTACTACGCCATTTCAGGGCTCAAACCGGGCTCA
GTCCCCATCAATGGCAACTAAGACTAAGGCTTGAGCGGGCCAAAAAAAGTCTGATGCAAAATGATGGTAATTCGCTGACC
GACATTGCCCATCAGCATGGCTTCAGCGACCTTAGCCACTTTACTCGCCACTTTCGCATGGCCTTTTTAACGTCACCCAG
CGCCTATCGTCGCGCTATCAGGAATTAA

Upstream 100 bases:

>100_bases
CGCTGTCGCAAACCAAGCCCGGCTCCGCTGCAATATTTTTCTAGCGCGCGGCCGGGACCGCCCCGTAAACTGGGGTAAAT
TGTTTCATATCAGGTGGCAG

Downstream 100 bases:

>100_bases
CGGATGTTGGACTTTACCCTGCTTGGCAGCATTGCCGTCATTCATACCATCGCACTGGCAAGCCCGGGGCCGGACTTTGC
CATTATGCTCAAGGTATCTC

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; AraC/XylS Family Transcriptional Regulator; AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; Transcriptional Regulator Protein AraC Family; AraC Family Regulatory Helix-Turn-Helix Protein; Transcriptional Regulator Protein; AraC Family Regulatory Protein; AraC/XylS Family Transcription Factor; Transcriptional Regulator AraC-Family; AraC Type Helix-Turn-Helix- Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; L-Rhamnose Operon Transcriptional Activator RhaR; Transcriptional Regulator AraC/XylS Family; Transcription Regulator Protein; Bacterial Regulatory Helix-Turn-Helix Protein; HTH-Type Transcriptional Activator RhaS; Arabinose Operon Regulatory Protein; Helix-Turn-Helix AraC-Type Trancriptional Regulator; AraC Family Regulator; Transcription Regulator; Transcriptional Activator; AraC-Family Regulatory Protein; Arac Family Transcriptional Regulator Protein Arac Family; Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MQQEIIDFRQSQSLAGAELSRASYQRFDFGRHVHEDLHLGAVIRGAQAFNHKGTGHTLCRGDLSTLSPDECHDGIAATDT
GYEVLVLSLPQWHLDRFAAELGISFGGFCQPKRKDMALYQAFVSLHRLLYQAENPLLEETALLDFFQRLLGQCSKSEKVT
NTGTVKAGLSREIRLAKSLMADTPEPVTLELLGDATGLGRYRLLRHFRAQTGLSPHQWQLRLRLERAKKSLMQNDGNSLT
DIAHQHGFSDLSHFTRHFRMAFLTSPSAYRRAIRN

Sequences:

>Translated_275_residues
MQQEIIDFRQSQSLAGAELSRASYQRFDFGRHVHEDLHLGAVIRGAQAFNHKGTGHTLCRGDLSTLSPDECHDGIAATDT
GYEVLVLSLPQWHLDRFAAELGISFGGFCQPKRKDMALYQAFVSLHRLLYQAENPLLEETALLDFFQRLLGQCSKSEKVT
NTGTVKAGLSREIRLAKSLMADTPEPVTLELLGDATGLGRYRLLRHFRAQTGLSPHQWQLRLRLERAKKSLMQNDGNSLT
DIAHQHGFSDLSHFTRHFRMAFLTSPSAYRRAIRN
>Mature_275_residues
MQQEIIDFRQSQSLAGAELSRASYQRFDFGRHVHEDLHLGAVIRGAQAFNHKGTGHTLCRGDLSTLSPDECHDGIAATDT
GYEVLVLSLPQWHLDRFAAELGISFGGFCQPKRKDMALYQAFVSLHRLLYQAENPLLEETALLDFFQRLLGQCSKSEKVT
NTGTVKAGLSREIRLAKSLMADTPEPVTLELLGDATGLGRYRLLRHFRAQTGLSPHQWQLRLRLERAKKSLMQNDGNSLT
DIAHQHGFSDLSHFTRHFRMAFLTSPSAYRRAIRN

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31017; Mature: 31017

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQEIIDFRQSQSLAGAELSRASYQRFDFGRHVHEDLHLGAVIRGAQAFNHKGTGHTLCR
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
GDLSTLSPDECHDGIAATDTGYEVLVLSLPQWHLDRFAAELGISFGGFCQPKRKDMALYQ
CCCCCCCCHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
AFVSLHRLLYQAENPLLEETALLDFFQRLLGQCSKSEKVTNTGTVKAGLSREIRLAKSLM
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCHHHHHHHHHHHH
ADTPEPVTLELLGDATGLGRYRLLRHFRAQTGLSPHQWQLRLRLERAKKSLMQNDGNSLT
HCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
DIAHQHGFSDLSHFTRHFRMAFLTSPSAYRRAIRN
HHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MQQEIIDFRQSQSLAGAELSRASYQRFDFGRHVHEDLHLGAVIRGAQAFNHKGTGHTLCR
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
GDLSTLSPDECHDGIAATDTGYEVLVLSLPQWHLDRFAAELGISFGGFCQPKRKDMALYQ
CCCCCCCCHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
AFVSLHRLLYQAENPLLEETALLDFFQRLLGQCSKSEKVTNTGTVKAGLSREIRLAKSLM
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCHHHHHHHHHHHH
ADTPEPVTLELLGDATGLGRYRLLRHFRAQTGLSPHQWQLRLRLERAKKSLMQNDGNSLT
HCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
DIAHQHGFSDLSHFTRHFRMAFLTSPSAYRRAIRN
HHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA