| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is fur [H]
Identifier: 119774571
GI number: 119774571
Start: 1745162
End: 1745647
Strand: Reverse
Name: fur [H]
Synonym: Sama_1434
Alternate gene names: 119774571
Gene position: 1745647-1745162 (Counterclockwise)
Preceding gene: 119774574
Following gene: 119774559
Centisome position: 40.54
GC content: 48.97
Gene sequence:
>486_bases ATGATTTCCATTGTCCACAAAGAGCCCAATGGTTCTGCAATCAAGAGATTAACCATGACAGATGGAAATCAGGCGCTGAA AAAAGCGGGATTGAAAGTTACCCTGCCACGAGTAAAAATCCTGGAGCTGATGCAAGAACCAGAGAATCAACACATCAGTG CCGAAGACCTGTACAAGAAGTTGCTCGAGATTGGTGAAGAGATTGGCCTGGCCACCGTGTACCGGGTACTGAACCAGTTC GACGATGCGGGCATCGTCTCCCGTCACCACTTCGAAAGCGGCAAGGCCGTGTTCGAGCTGTCAACCCAACATCATCACGA TCATCTGGTCTGTTTGAGCTGTGGCAAAGTGATTGAGTTTTCTGACGATTTGATTGAACGTCGTCAGAATGAAATTGCCA TGCGCCACAACATTAAGCTCACCAACCACAGCCTGTATCTGTACGGCGTATGCACCAACGATACCTGTGATCACGGCGAC GAGTAA
Upstream 100 bases:
>100_bases GACCCAATCATGGACGATTGTCTGATACACCAGCAAATATTGCCATATGAGTTCATTTAAGGGCTATCAAAGGTTTAAGT TTTGAATCCAGACACATATA
Downstream 100 bases:
>100_bases TCGCTGTTTTCCCTAATAAAAAACCAGCGCTCCAGCGCTGGTTTTTTTATTGCTTTATCCTGAAGCGCGGCTTAATGCGC GGACTACTCAGCGGTGAAAG
Product: ferric uptake regulator
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 161; Mature: 161
Protein sequence:
>161_residues MISIVHKEPNGSAIKRLTMTDGNQALKKAGLKVTLPRVKILELMQEPENQHISAEDLYKKLLEIGEEIGLATVYRVLNQF DDAGIVSRHHFESGKAVFELSTQHHHDHLVCLSCGKVIEFSDDLIERRQNEIAMRHNIKLTNHSLYLYGVCTNDTCDHGD E
Sequences:
>Translated_161_residues MISIVHKEPNGSAIKRLTMTDGNQALKKAGLKVTLPRVKILELMQEPENQHISAEDLYKKLLEIGEEIGLATVYRVLNQF DDAGIVSRHHFESGKAVFELSTQHHHDHLVCLSCGKVIEFSDDLIERRQNEIAMRHNIKLTNHSLYLYGVCTNDTCDHGD E >Mature_161_residues MISIVHKEPNGSAIKRLTMTDGNQALKKAGLKVTLPRVKILELMQEPENQHISAEDLYKKLLEIGEEIGLATVYRVLNQF DDAGIVSRHHFESGKAVFELSTQHHHDHLVCLSCGKVIEFSDDLIERRQNEIAMRHNIKLTNHSLYLYGVCTNDTCDHGD E
Specific function: Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
Organism=Escherichia coli, GI1786899, Length=138, Percent_Identity=76.8115942028985, Blast_Score=229, Evalue=8e-62,
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 - InterPro: IPR011991 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 18258; Mature: 18258
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISIVHKEPNGSAIKRLTMTDGNQALKKAGLKVTLPRVKILELMQEPENQHISAEDLYKK CEEEEEECCCCCCEEEEEECCCHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCHHHHHHH LLEIGEEIGLATVYRVLNQFDDAGIVSRHHFESGKAVFELSTQHHHDHLVCLSCGKVIEF HHHHHHHCCHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEECCCEEEC SDDLIERRQNEIAMRHNIKLTNHSLYLYGVCTNDTCDHGDE CHHHHHHHHHHHHHHHCEEEECCEEEEEEEECCCCCCCCCC >Mature Secondary Structure MISIVHKEPNGSAIKRLTMTDGNQALKKAGLKVTLPRVKILELMQEPENQHISAEDLYKK CEEEEEECCCCCCEEEEEECCCHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCHHHHHHH LLEIGEEIGLATVYRVLNQFDDAGIVSRHHFESGKAVFELSTQHHHDHLVCLSCGKVIEF HHHHHHHCCHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEECCCEEEC SDDLIERRQNEIAMRHNIKLTNHSLYLYGVCTNDTCDHGDE CHHHHHHHHHHHHHHHCEEEECCEEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1372314 [H]