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The map label for this gene is yicJ [H]

Identifier: 119774538

GI number: 119774538

Start: 1699855

End: 1701189

Strand: Reverse

Name: yicJ [H]

Synonym: Sama_1401

Alternate gene names: 119774538

Gene position: 1701189-1699855 (Counterclockwise)

Preceding gene: 119774539

Following gene: 119774537

Centisome position: 39.51

GC content: 52.88

Gene sequence:

>1335_bases
ATGCTGAGCGTCAGAGAAAAAATTGCTTATGGGCTGGGAGATACCGCCAGCAACATCGTTTTTCAAACCGTCATGCTGTT
CCTGACGTTCTTTTATACCGATATCTTTGGTATATCGGCGGCCTATGTTGGCACCATGTTTTTGGCTGTACGCATCATGG
ATGCGGTCACGGATCCCTTGATGGGCTATCTGGCAGACAGGACCAACACCCGCTGGGGCCGCTACCGGCCATACTTACTG
TGGTTTGCCTTTCCTTTTGCTGCCATCAGTGTACTTGCCTTTACCACCCCGGATTTGAGTGAAAGTGGCAAGGAATGGTA
TGCCTTTGCAACATACGCACTCTTGATGCTGGCCTACACGGCAATCAATATTCCTTACTGTGCCCTGGGCGCCGCCTTGA
CCACCAACCCGGCAGAACGGGTGTCGGTTCAGTCTTATCGCTTTGTATTTGCCATGCTCGGTGGGGTGATGGTCAGTGCC
CTTACCCTGCCCCTGGTGGATTTTTTTGGTCAGGGCGATAAAGCCAAAGGCTATCAGCTCACCATACTGGCGATGAGTAT
CGTCGGCACTGTGATGTTTTTACTGTGCTTTATCGGTACCAAAGAGCGCGACTTCAGCAGCGATGACAACAGCGGCAACT
TCAAGGCCGCCTCAAAGGCCCTGTGGGCCAATGACCAGTGGCGGGTATTGTCCGCGGCAGCCATCTTTTTGCTGACCGGC
TTGGTACTTAAATCCACCCTGGCCATCTACTACGTCAAATACTTCCTCGGTCGTGAAGACATGATCAGTGTGTTTGTCAC
CAGCGGTGTGGTTGGCAATATTTTTGGGGTCGCGCTTGCCAAAAAACTGGCCGACAAAATGTGTAAGGTGAAAGCCTATA
TCCGGCTCCAGCTTATCGCCGCAGCGCTCTGCATGGCAGCCTGGTTTGTGCCGGCTGACCAATATGTGCTGGCGCTGGTG
TTTTACATCGCCTGGAACTTTACCATCAACATGGGCACACCACTCTTGTGGGCGAAGATGGCCGATACCGTGGACTACGG
CCAGTTTAAAACCGGCGTGCGCACCACGGGTTTGGTTTACTCTTCGGTGATTTTCTTTATCAAACTGGGTCTTGCCATTG
GTGGCGCTCTGGGGGGCTGGTTGCTTGCCGCATACGGCTATCAACCCGATGTTGCGCAAACCGAAGAGACCCGGGCGGGC
ATCTTGTTGTGCTTTACCCTCTACCCAGCGCTGGCATCAATCGCTGTTGCCTTTGTGATGCGACACTATACACTGGACAG
CCAACGCGTTGCCGAGATCAGCGTATCTTTGCAACAAAAGCATTCAGGCACATAG

Upstream 100 bases:

>100_bases
GGACCCAGCAGCGCATACTCAAATCCAGCGCCAAAGCCTATCAGGGAATGCTTGCCATACGCCAAGAGGCCAGCCAACAA
TAATAATAACGGAGGTCGCC

Downstream 100 bases:

>100_bases
ATGTAGTACAAGGAAAGCCCGCGCGTATGGCCACAATTTATGACGTTTCCTTTCTGGCAGGCGTGTCGCTGGCGACCGTC
TCCAGGGTGGTGAACAACAC

Product: sugar (glycoside-Pentoside-hexuronide) transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MLSVREKIAYGLGDTASNIVFQTVMLFLTFFYTDIFGISAAYVGTMFLAVRIMDAVTDPLMGYLADRTNTRWGRYRPYLL
WFAFPFAAISVLAFTTPDLSESGKEWYAFATYALLMLAYTAINIPYCALGAALTTNPAERVSVQSYRFVFAMLGGVMVSA
LTLPLVDFFGQGDKAKGYQLTILAMSIVGTVMFLLCFIGTKERDFSSDDNSGNFKAASKALWANDQWRVLSAAAIFLLTG
LVLKSTLAIYYVKYFLGREDMISVFVTSGVVGNIFGVALAKKLADKMCKVKAYIRLQLIAAALCMAAWFVPADQYVLALV
FYIAWNFTINMGTPLLWAKMADTVDYGQFKTGVRTTGLVYSSVIFFIKLGLAIGGALGGWLLAAYGYQPDVAQTEETRAG
ILLCFTLYPALASIAVAFVMRHYTLDSQRVAEISVSLQQKHSGT

Sequences:

>Translated_444_residues
MLSVREKIAYGLGDTASNIVFQTVMLFLTFFYTDIFGISAAYVGTMFLAVRIMDAVTDPLMGYLADRTNTRWGRYRPYLL
WFAFPFAAISVLAFTTPDLSESGKEWYAFATYALLMLAYTAINIPYCALGAALTTNPAERVSVQSYRFVFAMLGGVMVSA
LTLPLVDFFGQGDKAKGYQLTILAMSIVGTVMFLLCFIGTKERDFSSDDNSGNFKAASKALWANDQWRVLSAAAIFLLTG
LVLKSTLAIYYVKYFLGREDMISVFVTSGVVGNIFGVALAKKLADKMCKVKAYIRLQLIAAALCMAAWFVPADQYVLALV
FYIAWNFTINMGTPLLWAKMADTVDYGQFKTGVRTTGLVYSSVIFFIKLGLAIGGALGGWLLAAYGYQPDVAQTEETRAG
ILLCFTLYPALASIAVAFVMRHYTLDSQRVAEISVSLQQKHSGT
>Mature_444_residues
MLSVREKIAYGLGDTASNIVFQTVMLFLTFFYTDIFGISAAYVGTMFLAVRIMDAVTDPLMGYLADRTNTRWGRYRPYLL
WFAFPFAAISVLAFTTPDLSESGKEWYAFATYALLMLAYTAINIPYCALGAALTTNPAERVSVQSYRFVFAMLGGVMVSA
LTLPLVDFFGQGDKAKGYQLTILAMSIVGTVMFLLCFIGTKERDFSSDDNSGNFKAASKALWANDQWRVLSAAAIFLLTG
LVLKSTLAIYYVKYFLGREDMISVFVTSGVVGNIFGVALAKKLADKMCKVKAYIRLQLIAAALCMAAWFVPADQYVLALV
FYIAWNFTINMGTPLLWAKMADTVDYGQFKTGVRTTGLVYSSVIFFIKLGLAIGGALGGWLLAAYGYQPDVAQTEETRAG
ILLCFTLYPALASIAVAFVMRHYTLDSQRVAEISVSLQQKHSGT

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Homo sapiens, GI122937339, Length=421, Percent_Identity=24.9406175771971, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI42713696, Length=174, Percent_Identity=29.8850574712644, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI87082306, Length=441, Percent_Identity=43.0839002267574, Blast_Score=359, Evalue=1e-100,
Organism=Escherichia coli, GI1786466, Length=443, Percent_Identity=38.1489841986456, Blast_Score=317, Evalue=1e-87,
Organism=Escherichia coli, GI48994989, Length=448, Percent_Identity=31.6964285714286, Blast_Score=199, Evalue=4e-52,
Organism=Escherichia coli, GI1787902, Length=450, Percent_Identity=30.6666666666667, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI145693206, Length=453, Percent_Identity=28.9183222958057, Blast_Score=179, Evalue=5e-46,
Organism=Escherichia coli, GI1790561, Length=449, Percent_Identity=27.1714922048998, Blast_Score=178, Evalue=6e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48834; Mature: 48834

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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HHHCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]