| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774472
Identifier: 119774472
GI number: 119774472
Start: 1626861
End: 1627370
Strand: Reverse
Name: 119774472
Synonym: Sama_1335
Alternate gene names: NA
Gene position: 1627370-1626861 (Counterclockwise)
Preceding gene: 119774478
Following gene: 119774468
Centisome position: 37.79
GC content: 52.55
Gene sequence:
>510_bases ATGCCAAAAAAGCTCATCAAAAGGTTTATGCCGCACCCGGATGCACTGAAAGATCACAAGCATCTAAAGATGTTTGGCAC CCTGTTGCATAAACCCAATCTATGGCACCTGAATCGCCGGTCGGCACCAGGTGCGTTTGCCGTTGGGCTGTTTATGGCCT GGATGCCCATGCCATTTCAAATGGTGGCCGCCGCGGCACTGGCGATTTTCTTCAATGTGAATTTGCCTGTTTCTGTGGCG CTGGTGTGGATAACCAACCCGGTAACCATGCCGTTTCTGTTTTATATCGCCTATCAGGTGGGAGCCAGACTGCTTGGCCA CACACCCCAGCCCTTTGCCTTTGAGGCCAGCTGGCAATGGCTGGAGTCATCTCTTGCCACCATAGGCCCGCCCTTTATGC TTGGTTGCCTGGTGCTTGGGGTTATCAGCGCCATTGTGGGCTTCTTTGTGATAAGCAACCTGTGGAAGTATTCGGTGCTC TTTAAGTGGAAAAATCGCGCCACACGCTAG
Upstream 100 bases:
>100_bases GCGGCAGCACTGGCCAGAGCAGCGATGAGATGACAAGGGCACAAAAGCCCAGCAGAAATGGGTTCTTCACAGCAGTAAGT TAAGACAGCATTATCCGCCT
Downstream 100 bases:
>100_bases CGCGTTGTGATGCTCTTTTTGGCCGCAGGTGCTAAGCCACAGACGATGAACCGTTAATACCCCGGCAATCGGGCTTACCG ACATTCAGCATGGAATGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 169; Mature: 168
Protein sequence:
>169_residues MPKKLIKRFMPHPDALKDHKHLKMFGTLLHKPNLWHLNRRSAPGAFAVGLFMAWMPMPFQMVAAAALAIFFNVNLPVSVA LVWITNPVTMPFLFYIAYQVGARLLGHTPQPFAFEASWQWLESSLATIGPPFMLGCLVLGVISAIVGFFVISNLWKYSVL FKWKNRATR
Sequences:
>Translated_169_residues MPKKLIKRFMPHPDALKDHKHLKMFGTLLHKPNLWHLNRRSAPGAFAVGLFMAWMPMPFQMVAAAALAIFFNVNLPVSVA LVWITNPVTMPFLFYIAYQVGARLLGHTPQPFAFEASWQWLESSLATIGPPFMLGCLVLGVISAIVGFFVISNLWKYSVL FKWKNRATR >Mature_168_residues PKKLIKRFMPHPDALKDHKHLKMFGTLLHKPNLWHLNRRSAPGAFAVGLFMAWMPMPFQMVAAAALAIFFNVNLPVSVAL VWITNPVTMPFLFYIAYQVGARLLGHTPQPFAFEASWQWLESSLATIGPPFMLGCLVLGVISAIVGFFVISNLWKYSVLF KWKNRATR
Specific function: Unknown
COG id: COG3216
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19170; Mature: 19039
Theoretical pI: Translated: 11.16; Mature: 11.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKKLIKRFMPHPDALKDHKHLKMFGTLLHKPNLWHLNRRSAPGAFAVGLFMAWMPMPFQ CCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHCCCCHH MVAAAALAIFFNVNLPVSVALVWITNPVTMPFLFYIAYQVGARLLGHTPQPFAFEASWQW HHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHH LESSLATIGPPFMLGCLVLGVISAIVGFFVISNLWKYSVLFKWKNRATR HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC >Mature Secondary Structure PKKLIKRFMPHPDALKDHKHLKMFGTLLHKPNLWHLNRRSAPGAFAVGLFMAWMPMPFQ CHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHCCCCHH MVAAAALAIFFNVNLPVSVALVWITNPVTMPFLFYIAYQVGARLLGHTPQPFAFEASWQW HHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHH LESSLATIGPPFMLGCLVLGVISAIVGFFVISNLWKYSVLFKWKNRATR HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA