| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119774468
Identifier: 119774468
GI number: 119774468
Start: 1622748
End: 1623329
Strand: Reverse
Name: 119774468
Synonym: Sama_1331
Alternate gene names: NA
Gene position: 1623329-1622748 (Counterclockwise)
Preceding gene: 119774472
Following gene: 119774467
Centisome position: 37.7
GC content: 52.75
Gene sequence:
>582_bases ATGTCCTTGTTAGCCGATCCCAACGCCTATTTCAGCGTGACGCACGATTTCAATGCCTATTTACAACCGTTTGACGGCCC CATGCCAAGTGATGCCGAGCTACTTGGTATGCGCAGCGTGGGCCTGCAACTGCTCAGTGACGTCAAAACCCTCGAAGCCG GGTGCTTATTGCATTTAAGGCAACTCGATAACGAAGCCAAAGCCGTGGTGGACTTTTTAAAATTACAGTCCCGTAAGGTG GACATGGTGCTGCACTACGTGCTGGAAAACGAGCAGCGCGATGGCAAACGCTACCGGGGCGTGAGTTTTGGTGGCAGCAA TATCGTGATTGAATCCCAGGGGACTTTGCGCCCCGGGGAGCTCTACAAAACCACTGTGTACATTCGTGATGAGCTGATTG CCCTGGTCTGTATCGCCCGGGTTACCTCGGTCAGCCACGAAGAGGGGCGTGAGCTTACCGAACTCGTTTATGAAGGCATA CTCGAAGCCGACGTAGAACATCTGGTTAAAGCCAGCCTGAGCGTACAACAAAAGCAGTTAAAAGCGCGCAAACAGCAAGC ACCAAGTCCCTTGGAAAGGTGA
Upstream 100 bases:
>100_bases AGAGGAAGAAAACATGTGCGCTGCTGATGCCTTGGCTATGCTTGCGTATTTATTTGAGTGGGCACGATAATAGGGGTATC TCACCTATAAATAAAGAGGC
Downstream 100 bases:
>100_bases CAAGCCTTAGTGCTTGCCTCTACAATGAGCGCCTGATTTTTCGTAAAAAAACCGGCAATCCAATCCGAATGAGTTCATTT ACGGTAGACCGTCTTCCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MSLLADPNAYFSVTHDFNAYLQPFDGPMPSDAELLGMRSVGLQLLSDVKTLEAGCLLHLRQLDNEAKAVVDFLKLQSRKV DMVLHYVLENEQRDGKRYRGVSFGGSNIVIESQGTLRPGELYKTTVYIRDELIALVCIARVTSVSHEEGRELTELVYEGI LEADVEHLVKASLSVQQKQLKARKQQAPSPLER
Sequences:
>Translated_193_residues MSLLADPNAYFSVTHDFNAYLQPFDGPMPSDAELLGMRSVGLQLLSDVKTLEAGCLLHLRQLDNEAKAVVDFLKLQSRKV DMVLHYVLENEQRDGKRYRGVSFGGSNIVIESQGTLRPGELYKTTVYIRDELIALVCIARVTSVSHEEGRELTELVYEGI LEADVEHLVKASLSVQQKQLKARKQQAPSPLER >Mature_192_residues SLLADPNAYFSVTHDFNAYLQPFDGPMPSDAELLGMRSVGLQLLSDVKTLEAGCLLHLRQLDNEAKAVVDFLKLQSRKVD MVLHYVLENEQRDGKRYRGVSFGGSNIVIESQGTLRPGELYKTTVYIRDELIALVCIARVTSVSHEEGRELTELVYEGIL EADVEHLVKASLSVQQKQLKARKQQAPSPLER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21628; Mature: 21497
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLADPNAYFSVTHDFNAYLQPFDGPMPSDAELLGMRSVGLQLLSDVKTLEAGCLLHLR CCCCCCCCCEEEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLDNEAKAVVDFLKLQSRKVDMVLHYVLENEQRDGKRYRGVSFGGSNIVIESQGTLRPGE HHCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHCCEEECCCEEEEECCCCCCCCH LYKTTVYIRDELIALVCIARVTSVSHEEGRELTELVYEGILEADVEHLVKASLSVQQKQL HHEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KARKQQAPSPLER HHHHHCCCCCCCC >Mature Secondary Structure SLLADPNAYFSVTHDFNAYLQPFDGPMPSDAELLGMRSVGLQLLSDVKTLEAGCLLHLR CCCCCCCCEEEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLDNEAKAVVDFLKLQSRKVDMVLHYVLENEQRDGKRYRGVSFGGSNIVIESQGTLRPGE HHCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHCCEEECCCEEEEECCCCCCCCH LYKTTVYIRDELIALVCIARVTSVSHEEGRELTELVYEGILEADVEHLVKASLSVQQKQL HHEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KARKQQAPSPLER HHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA